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@erasmusmc-dermatology

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catherinechia/README.md

Hello there, I'm Catherine

My interest is using ML/AI (computer vision, NLP and knowledge graphs) to help solve real-world problems. Because my background spans wet lab (tissue engineering and regenerative medicine), medical imaging and mechanical engineering, I am really comfortable (and kinda enjoy it) bridging the gap between life and physical sciences, and ML/AI data solutions.

LinkedIn Google Scholar ORCID Gists

What I'm currently working on

  • Diagnostic and prognostic models using attention-based multiple instance learning pathology-clam-addmil
  • Chimera multimodal AI challenge 2025 link

What I'm currently tinkering on

  • Ontology and knowledge graphs for multimodal biomedical data KG

Selected work and publications

  • Single-cell / bulk RNA-seq cell-typing finding-neurons
  • Notch signalling pathway modeling from 3D-tracked time-series data modeling-notch-signaling
  • (Publication) Navigating the landscape of multimodal AI in medicine: a scoping review on technical challenges and clinical applications, 2025 link
  • (Publication) Enhancing Early Detection of Metastatic Cutaneous Squamous Cell Carcinoma (CSCC): Integrating AI With Histopathological Assessments, 2025
  • (Publication) Artificial intelligence-aided ultrasound imaging in hepatopancreatobiliary surgery: where are we now? 2024 link
  • (Patent) Head Protection Device and Method of Manufacturing the Same link

Full list on Google Scholar

Pinned Loading

  1. DIAGNijmegen/pathology-clam-addmil DIAGNijmegen/pathology-clam-addmil Public

    Python 1 2

  2. 20250311_pathology-whole-slide-data 20250311_pathology-whole-slide-data Public

    Forked from DIAGNijmegen/pathology-whole-slide-data

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 1

  3. finding-neurons finding-neurons Public

    Multiple single-subject tissue samples cell-typing using bulk and single-cell RNAseq

    Jupyter Notebook

  4. modeling-notch-signaling modeling-notch-signaling Public

    Notch signalling pathway modeling using 3D-tracked time-series data

    Julia

  5. 20240311_Erasmus_bioinformatics_MSMB 20240311_Erasmus_bioinformatics_MSMB Public

    HTML

  6. 20251001_KG 20251001_KG Public

    Python