R and APL code for graph processing and various post-processing and packaging for ecoConnect

Top-level calls and code for passes 0, 1, and 3 are in APL (in APL/*.apl). All other code is in R.

Top-level call and all passes for ecoConnect (APL)

ECOCONNECT (top-level function, with info on passes and parameters in comments)
	ECONODES (pass 0)
	ECOPATHS (pass 1)
	ECOGRAPH (pass 2)
	ECOPATHS (again, pass 3)

Pass 2 of ECOCONNECT, (in R, called by APL function ECOGRAPH)

call.eco.graph.R
	eco.graph.R
		read.graph.R

Data finishing, called after ECOCONNECT run

both.graph2shape.R
	read.vectors.R
	save.vectors.attribs.R
	make.sf.line.segments.R

make.shapefile.R (from x:/LCC/Code/Prep/shapefiles/)

Post processing

rescale.ecoConnect.R
prep.ecoConnect.quantiles.R
ecoConnect.quantiles.R

Packaging/prep for GeoServer

package.ecoConnect.R
ecoConnect_tool_prep.R

Species Refugia project

graph2shape.R

ecoConnect vulnerability (Objective 3 of 2022 NE CASC project)

regional_connect_vuln.R