typhoonplots

Plots to visualize histones, transcription factors, and other DNA-binding proteins. Plot type created by the MacAlpine Lab, ported to Python by me.

Scripts:

typhoonPlot.py Generates "typhoon plots" based off of one or more BAM/SAM files
typhoonPlot_multiWindows.py Generates typhoon plots of a single BAM/SAM file across multiple windows
kernelDensityPlot.py Generates kernel density plots off of one or more BAM/SAM files

Use run.py as a guide to run the three scripts in this repository.

Name		Name	Last commit message	Last commit date
.gitignore		.gitignore
README.md		README.md
genebodies.txt		genebodies.txt
kernelDensityPlot.py		kernelDensityPlot.py
plotUtils.py		plotUtils.py
run.py		run.py
typhoonPlot.py		typhoonPlot.py
typhoonPlot_multiWindows.py		typhoonPlot_multiWindows.py

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