RNAHeliCes

RNAHeliCes Copyright (C) 2011-14 Jiabin Huang, Bjoern Voss.

Quickstart

1. Read deps and install the dependent compilers and packages
2. Type ./configure make make install to configure, make and install RNAHeliCes, HiPath and HiTed Notes:
   • If there are any linking problems after installing, please check if /usr/local/lib is contained in the environmental variable LD_LIBRARY_PATH.
   • ./src/libs/libRNA.a contains all Vienna package routines, this may be system dependent. If so, please reload this from Vienna RNA Package.
3. Type './src/RNAHeliCes ./examples/collosoma_slrna.seq' to run an example.
4. Type './src/HiPath -h' to get help for calculating energy barriers of an energy landscape. Type './src/HiPath -f ./examples/alternating_rna.faa -t 1 -P ./src/librna/vienna/rna_turner1999.par' to run an example.
5. Type './src/HiTed -h' to get help for calculating minimum Hishape based Tree edit distance. Type './src/HiTed ./examples/riboswitches.fas -t 1 -r 1' to run an example.
6. See ./HiKinetics/README for HiKinetics.

See "INSTALL" for detailed installation instructions, and "COPYING" for disclaimer and copyright.