GitHub - biosbaehr/liquid_vs_plate_MA: liquid vs plate MA 2024 lynch lab, growing e coli in liquid vs plate to measure mutation rate and mutation spectrum.

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
2023-07-12-LvP_Coeff_Var_CV_cellcount_graph_R.R		2023-07-12-LvP_Coeff_Var_CV_cellcount_graph_R.R
2023-07-13_LvP_24hr_CFU_Cellcounts_all.R		2023-07-13_LvP_24hr_CFU_Cellcounts_all.R
2023-07-18-LvP_CV_BOXPLOT_This_One_is_Better_Ithink.R		2023-07-18-LvP_CV_BOXPLOT_This_One_is_Better_Ithink.R
2023-07-18-LvP_all_MA_spectrum_color_Ratios_Notrates.R		2023-07-18-LvP_all_MA_spectrum_color_Ratios_Notrates.R
2023-11-26_LvP_mutationrate_graph.R		2023-11-26_LvP_mutationrate_graph.R
2023-11-26_LvP_plate_MA_spectrum_color_JUST_LvP_2023.R		2023-11-26_LvP_plate_MA_spectrum_color_JUST_LvP_2023.R
2024-03-26_count_mutations_snps_Liquidvsplate.py		2024-03-26_count_mutations_snps_Liquidvsplate.py
2024-04-02_count_indels_liquidvsplate.py		2024-04-02_count_indels_liquidvsplate.py
all_analysis.sh		all_analysis.sh
all_mut.pl		all_mut.pl
bwa_0.sbatch.sh		bwa_0.sbatch.sh
bwa_33_34.sbatch.sh		bwa_33_34.sbatch.sh
bwa_all.sbatch.sh		bwa_all.sbatch.sh
bwa_gatk_anc.sbatch.sh		bwa_gatk_anc.sbatch.sh
gatk_2_33_34.sbatch.sh		gatk_2_33_34.sbatch.sh
gatk_2_34.sbatch.sh		gatk_2_34.sbatch.sh
gatk_2_all.sbatch.sh		gatk_2_all.sbatch.sh
gatk_33_34.sbatch.sh		gatk_33_34.sbatch.sh
gatk_34.sbatch.sh		gatk_34.sbatch.sh
gatk_all.sbatch.sh		gatk_all.sbatch.sh
making_library.sh		making_library.sh
snm_count_by_line.R		snm_count_by_line.R
snm_count_mut_type.R		snm_count_mut_type.R
snm_count_mut_type_final.R		snm_count_mut_type_final.R
snm_count_spec.R		snm_count_spec.R
snm_count_spec_chisq.R		snm_count_spec_chisq.R
snm_pos_parallel_count.R		snm_pos_parallel_count.R
snpEff_all.sbatch.sh		snpEff_all.sbatch.sh
trimm_bwa_gatk.anc.sbatch.sh		trimm_bwa_gatk.anc.sbatch.sh
trimm_bwa_gatk.sbatch.sh		trimm_bwa_gatk.sbatch.sh