Arrayrev#4

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bfrosik wants to merge 341 commits into

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AdvancedPhotonSource:arrayrev

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Commits on Sep 12, 2018

Added easy of use to the command line, added defaults, etc. Changed data.py to use only one set of parameters (as before there vere many sets that gave results, and the best result was selected)
bfrosik
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Commits on Sep 20, 2018

refactored with inheritance
bfrosik
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Commits on Oct 17, 2018

Commits on Nov 6, 2018

Added parallelism with Parsl library
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Commits on Nov 12, 2018

fixed print statement
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Commits on Nov 15, 2018

Added everything.sh script and refactored
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Commits on Nov 19, 2018

added print return value (for xfm1 to work)
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Commits on Dec 4, 2018

Commits on Dec 11, 2018

updated for pyqt5.
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Commits on Dec 18, 2018

fixed adjust_dimensions and modified running scripts
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Commits on Jan 7, 2019

changed structure. modified setup.py to install
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Commits on Jan 8, 2019

Added genetic algorithm function and comments
bfrosik
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Commits on Jan 17, 2019

Removed redundant code
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Commits on Jan 21, 2019

Commits on Feb 15, 2019

synched with beamline code
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Commits on Feb 21, 2019

fixed aliens, added code to capture files before and after aliens
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Commits on Mar 12, 2019

Added utils_ga for the genetic algorithm functions.
bfrosik
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Commits on Mar 15, 2019

Added info messages, reading config from the experiment dir
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Commits on Apr 3, 2019

Commits on Apr 4, 2019

Commits on Apr 9, 2019

centered the image for display
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Commits on Apr 12, 2019

Commits on Apr 15, 2019

Commits on Apr 16, 2019

Commits on Apr 22, 2019

Cleaned up display messages, fixed bug for running display with no pcdi, added features to prep
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Commits on Apr 23, 2019

fixed data extension from npy to tif
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Commits on Apr 24, 2019

fixed error parsing dislay config
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Commits on Apr 30, 2019

Commits on May 2, 2019

Commits on May 3, 2019

fixed problem with saving wrong config file
bfrosik
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Commits on May 14, 2019

Tested GA, changed parsl configuration
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Commits on May 16, 2019

Commits on May 17, 2019

Updated description
bfrosik
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Commits on May 24, 2019

Added configuration for choosing the twin quadrant, added reporting utilities.
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Commits on May 30, 2019

Separated parsing spec for prep and for display.
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Commits on May 31, 2019

fixed plot_errors
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Commits on Jun 4, 2019

fixed binning and crop
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Commits on Jun 10, 2019

moved creating algorithm objects from State to Worker
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Commits on Jun 11, 2019

initialized darkfile and whitefile
bfrosik
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Commits on Jun 13, 2019

Update prep.py
bfrosik
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Commits on Jun 18, 2019

Update run_disp.py
bfrosik
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Commits on Jun 20, 2019

Commits on Jun 21, 2019

Update run_disp.py
bfrosik
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Commits on Jun 24, 2019

Commits on Jul 10, 2019

Commits on Jul 17, 2019

Commits on Aug 6, 2019

Commits on Aug 7, 2019

Commits on Aug 16, 2019

Added feature to run multiple reconstructions for multiple configurations
bfrosik
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Commits on Aug 19, 2019

Added feature to run multiple reconstructions for multiple configurations
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Commits on Aug 23, 2019

Commits on Aug 27, 2019

Replaced Parsl handling with multiprocessing Pool
bfrosik
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Commits on Sep 12, 2019

Update meta.yaml
bfrosik
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Commits on Oct 4, 2019

fixed several issues:
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Commits on Oct 7, 2019

Commits on Oct 24, 2019

Commits on Nov 11, 2019

Modify processing display. It will process all images of of chosen directory
bfrosik
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Commits on Nov 12, 2019

Added seed to random number generator in fast module
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Commits on Nov 18, 2019

added multiprocessing if multiple scans or multiple reconstructions
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Commits on Dec 6, 2019

created double pool for multiple scans and multiple reconstructions, handled Nans during reconstruction
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Commits on Dec 10, 2019

updated license file and meta
bfrosik
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Commits on Dec 11, 2019

changed library path from chosen to lib
bfrosik
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Commits on Jan 6, 2020

Not sure why there are so many files being added.
Service Account for David Cyl
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Commits on Jan 20, 2020

Most array swapaxes removed. Maybe got all of the important ones.
Service Account for David Cyl
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Most array swapaxes removed. Maybe got all of the important ones. Had to redo the viz
Service Account for David Cyl
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Commits on Jan 23, 2020

think the xrayutilities implementation with tvtk is correct now.
Service Account for David Cyl
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deleted a core file before push
Service Account for David Cyl
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Commits on Jan 30, 2020

Commits on Jan 31, 2020