fix: cap RaSP ΔΔG download to 4 segments to avoid mirror stalls#88
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St3451 wants to merge 1 commit into
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fix: cap RaSP ΔΔG download to 4 segments to avoid mirror stalls#88St3451 wants to merge 1 commit into
St3451 wants to merge 1 commit into
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Summary
oncodrive3d build-annotationswas stalling indefinitely when downloading the ~8.6 GB RaSP human ΔΔG bundle fromsid.erda.dk. The host throttles/drops connections when too many segments are opened in parallel, leavingpypdlreporting0.00 MB/s, ETA: 99:59:59until the socket-read timeout fires.min(cores, 8)segments (inherited fromdownload_single_file), which is reliable for AlphaFold/Ensembl mirrors but too aggressive for the erda.dk share hosting RaSP.min(threads, 4)for the RaSP call site only — all other downloads (AlphaFold structures, BioMart, MANE summary) keep their existing behavior.