feat: add context-aware wiki link resolution with source_path support

src/basic_memory/api/v2/routers/knowledge_router.py

@@ -103,8 +103,12 @@ async def resolve_identifier(
     resolution_method = "external_id" if entity else "search"
 
     # If not found by external_id, try other resolution methods
+    # Pass source_path for context-aware resolution (prefers notes closer to source)
+    # Pass strict to control fuzzy search fallback (default False allows fuzzy matching)
     if not entity:
-        entity = await link_resolver.resolve_link(data.identifier)
+        entity = await link_resolver.resolve_link(
+            data.identifier, source_path=data.source_path, strict=data.strict
+        )
         if entity:
             # Determine resolution method
             if entity.permalink == data.identifier:

src/basic_memory/repository/entity_repository.py

@@ -5,7 +5,7 @@
 
 
 from loguru import logger
-from sqlalchemy import select
+from sqlalchemy import select, func
 from sqlalchemy.exc import IntegrityError
 from sqlalchemy.ext.asyncio import AsyncSession, async_sessionmaker
 from sqlalchemy.orm import selectinload
@@ -69,12 +69,21 @@ async def get_by_permalink(self, permalink: str) -> Optional[Entity]:
         return await self.find_one(query)
 
     async def get_by_title(self, title: str) -> Sequence[Entity]:
-        """Get entity by title.
+        """Get entities by title, ordered by shortest path first.
+
+        When multiple entities share the same title (in different folders),
+        returns them ordered by file_path length then alphabetically.
+        This provides "shortest path" resolution for duplicate titles.
 
         Args:
             title: Title of the entity to find
         """
-        query = self.select().where(Entity.title == title).options(*self.get_load_options())
+        query = (
+            self.select()
+            .where(Entity.title == title)
+            .order_by(func.length(Entity.file_path), Entity.file_path)
+            .options(*self.get_load_options())
+        )
         result = await self.execute_query(query)
         return list(result.scalars().all())
 

src/basic_memory/schemas/v2/entity.py

@@ -15,6 +15,9 @@ class EntityResolveRequest(BaseModel):
     - Permalinks (e.g., "specs/search")
     - Titles (e.g., "Search Specification")
     - File paths (e.g., "specs/search.md")
+
+    When source_path is provided, resolution prefers notes closer to the source
+    (context-aware resolution for duplicate titles).
     """
 
     identifier: str = Field(
@@ -23,6 +26,15 @@ class EntityResolveRequest(BaseModel):
         min_length=1,
         max_length=500,
     )
+    source_path: Optional[str] = Field(
+        None,
+        description="Path of the source file containing the link (for context-aware resolution)",
+        max_length=500,
+    )
+    strict: bool = Field(
+        False,
+        description="If True, only exact matches are allowed (no fuzzy search fallback)",
+    )
 
 
 class EntityResolveResponse(BaseModel):

src/basic_memory/services/link_resolver.py

@@ -28,20 +28,81 @@ def __init__(self, entity_repository: EntityRepository, search_service: SearchSe
         self.search_service = search_service
 
     async def resolve_link(
-        self, link_text: str, use_search: bool = True, strict: bool = False
+        self,
+        link_text: str,
+        use_search: bool = True,
+        strict: bool = False,
+        source_path: Optional[str] = None,
     ) -> Optional[Entity]:
         """Resolve a markdown link to a permalink.
 
         Args:
             link_text: The link text to resolve
             use_search: Whether to use search-based fuzzy matching as fallback
             strict: If True, only exact matches are allowed (no fuzzy search fallback)
+            source_path: Optional path of the source file containing the link.
+                        Used to prefer notes closer to the source (context-aware resolution).
         """
-        logger.trace(f"Resolving link: {link_text}")
+        logger.trace(f"Resolving link: {link_text} (source: {source_path})")
 
         # Clean link text and extract any alias
         clean_text, alias = self._normalize_link_text(link_text)
 
+        # --- Path Resolution ---
+        # Note: All paths in Basic Memory are stored as POSIX strings (forward slashes)
+        # for cross-platform compatibility. See entity_repository.py which normalizes
+        # paths using Path().as_posix(). This allows consistent path operations here.
+
+        # --- Relative Path Resolution ---
+        # Trigger: source_path is provided AND link contains "/"
+        # Why: Resolve paths like [[nested/deep-note]] relative to source folder first
+        # Outcome: [[nested/deep-note]] from testing/link-test.md → testing/nested/deep-note.md
+        if source_path and "/" in clean_text:
+            source_folder = source_path.rsplit("/", 1)[0] if "/" in source_path else ""
+            if source_folder:
+                # Construct relative path from source folder
+                relative_path = f"{source_folder}/{clean_text}"
+
+                # Try with .md extension
+                if not relative_path.endswith(".md"):
+                    relative_path_md = f"{relative_path}.md"
+                    entity = await self.entity_repository.get_by_file_path(relative_path_md)
+                    if entity:
+                        return entity
+
+                # Try as-is (already has extension or is a permalink)
+                entity = await self.entity_repository.get_by_file_path(relative_path)
+                if entity:
+                    return entity
+
+        # When source_path is provided, use context-aware resolution:
+        # Check both permalink and title matches, prefer closest to source.
+        # Example: [[testing]] from folder/note.md prefers folder/testing.md
+        # over a root testing.md with permalink "testing".
+        if source_path:
+            # Gather all potential matches
+            candidates: list[Entity] = []
+
+            # Check permalink match
+            permalink_entity = await self.entity_repository.get_by_permalink(clean_text)
+            if permalink_entity:
+                candidates.append(permalink_entity)
+
+            # Check title matches
+            title_entities = await self.entity_repository.get_by_title(clean_text)
+            for entity in title_entities:
+                # Avoid duplicates (permalink match might also be in title matches)
+                if entity.id not in [c.id for c in candidates]:
+                    candidates.append(entity)
+
+            if candidates:
+                if len(candidates) == 1:
+                    return candidates[0]
+                else:
+                    # Multiple candidates - pick closest to source
+                    return self._find_closest_entity(candidates, source_path)
+
+        # Standard resolution (no source context): permalink first, then title
         # 1. Try exact permalink match first (most efficient)
         entity = await self.entity_repository.get_by_permalink(clean_text)
         if entity:
@@ -51,7 +112,7 @@ async def resolve_link(
         # 2. Try exact title match
         found = await self.entity_repository.get_by_title(clean_text)
         if found:
-            # Return first match if there are duplicates (consistent behavior)
+            # Return first match (shortest path) if no source context
             entity = found[0]
             logger.debug(f"Found title match: {entity.title}")
             return entity
@@ -108,7 +169,7 @@ def _normalize_link_text(self, link_text: str) -> Tuple[str, Optional[str]]:
         if text.startswith("[[") and text.endswith("]]"):
             text = text[2:-2]
 
-        # Handle Obsidian-style aliases (format: [[actual|alias]])
+        # Handle wiki link aliases (format: [[actual|alias]])
         alias = None
         if "|" in text:
             text, alias = text.split("|", 1)
@@ -119,3 +180,72 @@ def _normalize_link_text(self, link_text: str) -> Tuple[str, Optional[str]]:
             text = text.strip()
 
         return text, alias
+
+    def _find_closest_entity(self, entities: list[Entity], source_path: str) -> Entity:
+        """Find the entity closest to the source file path.
+
+        Context-aware resolution: prefer notes in the same folder or closer in hierarchy.
+
+        Proximity Scoring Algorithm:
+        - Priority 0: Same folder as source (best match)
+        - Priority 1-N: Ancestor folders (N = levels up from source)
+        - Priority 100+N: Descendant folders (N = levels down, deprioritized)
+        - Priority 1000: Completely unrelated paths (least preferred)
+        - Ties are broken by shortest absolute path (consistent behavior)
+
+        Args:
+            entities: List of entities with the same title
+            source_path: Path of the file containing the link
+
+        Returns:
+            The entity closest to the source path
+        """
+        # Extract source folder (everything before the last /)
+        source_folder = source_path.rsplit("/", 1)[0] if "/" in source_path else ""
+
+        def path_proximity(entity: Entity) -> Tuple[int, int]:
+            """Return (proximity_score, path_length) for sorting.
+
+            Lower is better for both values.
+            """
+            entity_path = entity.file_path
+            entity_folder = entity_path.rsplit("/", 1)[0] if "/" in entity_path else ""
+
+            # Trigger: entity is in the same folder as source
+            # Why: same-folder notes are most contextually relevant
+            # Outcome: priority = 0 (best), ties broken by shortest path
+            if entity_folder == source_folder:
+                return (0, len(entity_path))
+
+            # Trigger: entity is in an ancestor folder of source
+            # e.g., source is "a/b/c/file.md", entity is "a/b/note.md" -> ancestor
+            # Why: ancestors are contextually relevant (shared parent context)
+            # Outcome: priority = levels_up (1, 2, 3...), closer ancestors preferred
+            if source_folder.startswith(entity_folder + "/") if entity_folder else source_folder:
+                # Count how many levels up
+                if entity_folder:
+                    levels_up = source_folder.count("/") - entity_folder.count("/")
+                else:
+                    # Root level
+                    levels_up = source_folder.count("/") + 1
+                return (levels_up, len(entity_path))
+
+            # Trigger: entity is in a descendant folder of source
+            # e.g., source is "a/file.md", entity is "a/b/c/note.md" -> descendant
+            # Why: descendants are less contextually relevant than ancestors
+            # Outcome: priority = 100 + levels_down, significantly deprioritized
+            if entity_folder.startswith(source_folder + "/") if source_folder else entity_folder:
+                if source_folder:
+                    levels_down = entity_folder.count("/") - source_folder.count("/")
+                else:
+                    # Source is at root
+                    levels_down = entity_folder.count("/") + 1
+                return (100 + levels_down, len(entity_path))
+
+            # Trigger: entity is in a completely unrelated path
+            # Why: no folder relationship means minimal contextual relevance
+            # Outcome: priority = 1000, only selected if no related paths exist
+            return (1000, len(entity_path))
+
+        # Sort by proximity (lower is better), then by path length (shorter is better)
+        return min(entities, key=path_proximity)

tests/api/v2/test_knowledge_router.py

@@ -52,6 +52,60 @@ async def test_resolve_identifier_not_found(client: AsyncClient, v2_project_url)
     assert "Entity not found" in response.json()["detail"]
 
 
+@pytest.mark.asyncio
+async def test_resolve_identifier_no_fuzzy_match(client: AsyncClient, v2_project_url):
+    """Test that resolve uses strict mode - no fuzzy search fallback.
+
+    This ensures wiki links only resolve to exact matches (permalink, title, or path),
+    not to similar-sounding entities via fuzzy search.
+    """
+    # Create an entity with a specific name
+    entity_data = {
+        "title": "link-test",
+        "folder": "testing",
+        "content": "A test note",
+    }
+    response = await client.post(f"{v2_project_url}/knowledge/entities", json=entity_data)
+    assert response.status_code == 200
+
+    # Try to resolve "nonexistent" - should NOT fuzzy match to "link-test"
+    resolve_data = {"identifier": "nonexistent"}
+    response = await client.post(f"{v2_project_url}/knowledge/resolve", json=resolve_data)
+
+    # Must return 404, not a fuzzy match to "link-test"
+    assert response.status_code == 404
+    assert "Entity not found" in response.json()["detail"]
+
+
+@pytest.mark.asyncio
+async def test_resolve_identifier_with_source_path_no_fuzzy_match(client: AsyncClient, v2_project_url):
+    """Test that context-aware resolution also uses strict mode.
+
+    Even with source_path for context-aware resolution, nonexistent
+    links should return 404, not fuzzy match to nearby entities.
+    """
+    # Create entities in a folder structure
+    entity_data = {
+        "title": "link-test",
+        "folder": "testing/nested",
+        "content": "A nested test note",
+    }
+    response = await client.post(f"{v2_project_url}/knowledge/entities", json=entity_data)
+    assert response.status_code == 200
+
+    # Try to resolve "nonexistent" with source_path context
+    # Should NOT fuzzy match to "link-test" in the same or nearby folder
+    resolve_data = {
+        "identifier": "nonexistent",
+        "source_path": "testing/nested/other-note.md",
+    }
+    response = await client.post(f"{v2_project_url}/knowledge/resolve", json=resolve_data)
+
+    # Must return 404, not a fuzzy match
+    assert response.status_code == 404
+    assert "Entity not found" in response.json()["detail"]
+
+
 @pytest.mark.asyncio
 async def test_get_entity_by_id(client: AsyncClient, test_graph, v2_project_url, entity_repository):
     """Test getting an entity by its external_id (UUID)."""

tests/repository/test_entity_repository.py

@@ -456,6 +456,66 @@ async def test_get_by_title(entity_repository: EntityRepository, session_maker):
     assert len(found) == 2
 
 
+@pytest.mark.asyncio
+async def test_get_by_title_returns_shortest_path_first(
+    entity_repository: EntityRepository, session_maker
+):
+    """Test that duplicate titles are returned with shortest path first.
+
+    When multiple entities share the same title in different folders,
+    the one with the shortest file path should be returned first.
+    This provides consistent, predictable link resolution.
+    """
+    async with db.scoped_session(session_maker) as session:
+        # Create entities with same title but different path lengths
+        # Insert in reverse order to ensure we're testing ordering, not insertion order
+        entities = [
+            Entity(
+                project_id=entity_repository.project_id,
+                title="My Note",
+                entity_type="note",
+                permalink="archive/old/2024/my-note",
+                file_path="archive/old/2024/My Note.md",  # longest path
+                content_type="text/markdown",
+                created_at=datetime.now(timezone.utc),
+                updated_at=datetime.now(timezone.utc),
+            ),
+            Entity(
+                project_id=entity_repository.project_id,
+                title="My Note",
+                entity_type="note",
+                permalink="docs/my-note",
+                file_path="docs/My Note.md",  # medium path
+                content_type="text/markdown",
+                created_at=datetime.now(timezone.utc),
+                updated_at=datetime.now(timezone.utc),
+            ),
+            Entity(
+                project_id=entity_repository.project_id,
+                title="My Note",
+                entity_type="note",
+                permalink="my-note",
+                file_path="My Note.md",  # shortest path (root)
+                content_type="text/markdown",
+                created_at=datetime.now(timezone.utc),
+                updated_at=datetime.now(timezone.utc),
+            ),
+        ]
+        session.add_all(entities)
+        await session.flush()
+
+    # Get all entities with title "My Note"
+    found = await entity_repository.get_by_title("My Note")
+
+    # Should return all 3
+    assert len(found) == 3
+
+    # Should be ordered by path length (shortest first)
+    assert found[0].file_path == "My Note.md"  # shortest
+    assert found[1].file_path == "docs/My Note.md"  # medium
+    assert found[2].file_path == "archive/old/2024/My Note.md"  # longest
+
+
 @pytest.mark.asyncio
 async def test_get_by_file_path(entity_repository: EntityRepository, session_maker):
     """Test getting an entity by title."""