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@barricklab

Barrick Lab

Barrick Lab at the University of Texas at Austin

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  1. breseq breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq …

    C++ 179 23

  2. LTEE-Ecoli LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 19 5

  3. ostir ostir Public

    Software for predicting translation initiation rates in bacteria

    Python 33 9

  4. pLannotate pLannotate Public

    Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    Python 17 4

  5. brefito brefito Public

    Snakemake pipelines for analyzing resequenced bacterial genomes

    Python 3 1

Repositories

Showing 10 of 51 repositories
  • Ecoli-phage-ssrs Public

    Analysis of simple sequence repeats in E. coli bacteriophage genomes that may act as contingency loci

    barricklab/Ecoli-phage-ssrs’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 17, 2026
  • breseq-ext-cnv Public

    breseq copy number variation extension

    barricklab/breseq-ext-cnv’s past year of commit activity
    Python 0 GPL-2.0 0 1 0 Updated Feb 26, 2026
  • brefito Public

    Snakemake pipelines for analyzing resequenced bacterial genomes

    barricklab/brefito’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Feb 26, 2026
  • LTEE-leaderboard Public

    Shiny tool for viewing the transfer history of the E. coli Long-Term Evolution Experiment

    barricklab/LTEE-leaderboard’s past year of commit activity
    R 0 0 0 0 Updated Jan 2, 2026
  • breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

    barricklab/breseq’s past year of commit activity
    C++ 179 GPL-2.0 23 39 0 Updated Nov 17, 2025
  • efmcalculator2 Public
    barricklab/efmcalculator2’s past year of commit activity
    Python 1 GPL-3.0 0 1 0 Updated Oct 27, 2025
  • seabreeze Public

    seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

    barricklab/seabreeze’s past year of commit activity
    Python 4 MIT 2 7 0 Updated Sep 18, 2025
  • barricklab Public

    General data analysis spreadsheets and scripts

    barricklab/barricklab’s past year of commit activity
    Python 4 3 0 0 Updated Sep 13, 2025
  • barricklab_calendar Public

    Google Calendar to Slack Daily Events

    barricklab/barricklab_calendar’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 9, 2025
  • ostir Public

    Software for predicting translation initiation rates in bacteria

    barricklab/ostir’s past year of commit activity
    Python 33 GPL-3.0 9 3 (1 issue needs help) 0 Updated Jul 30, 2025
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