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Replace chunk code with ad hoc function with trias function#139

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sannegovaert merged 3 commits intob-cubed-eu:mainfrom
damianooldoni:update-from-checklist-to-cube
Mar 27, 2026
Merged

Replace chunk code with ad hoc function with trias function#139
sannegovaert merged 3 commits intob-cubed-eu:mainfrom
damianooldoni:update-from-checklist-to-cube

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@damianooldoni damianooldoni commented Mar 24, 2026

This pull request updates the documentation in cube-from-checklist.md to reflect changes in how users should retrieve GBIF backbone taxon keys for checklist datasets. The main change is the recommendation to use the get_nubkeys() function from the trias R package instead of providing a custom R function directly in the documentation.

Documentation update for checklist taxon key retrieval:

  • Updated the instructions to recommend the get_nubkeys() function from the trias R package for retrieving GBIF backbone taxon keys, replacing the previously included custom R code and its explanation. The new guidance provides a direct link to the function's documentation and explains its usage and arguments.
  • Removed the embedded R code example and related explanatory text for the custom name_backbone_gbif_checklist function, streamlining the tutorial and reducing maintenance burden.

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@peterdesmet, @sannegovaert: could you please review it? It will not take long. Thanks.
I cannot assign you as reviewers as it seems I made a PR from a fork under my GitHub account.

@sannegovaert sannegovaert self-requested a review March 24, 2026 10:28
Comment thread src/content/docs/tutorials/cube-from-checklist.md Outdated
As proposed by @sannegovaert, I agree to remove this as it is not worth to mention such unlikely situation.
@sannegovaert sannegovaert merged commit d1a2183 into b-cubed-eu:main Mar 27, 2026
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