Issues

• Remove scaffold gap misassemblies from unique misassemblies in QUAST

  bug
  algbio/practical-omnitigs#211 · Filter by author sebschmi opened on Feb 17, 2021 · Integrate wtdbg2
  

• Add option to heuristically compute the omnitigs of all SCCs

  enhancement
  algbio/practical-omnitigs#194 · Filter by author sebschmi opened on Dec 3, 2020 · Integrate wtdbg2

• Output statistics about macronodes per omnitig and macronodes per macrotig

  enhancement
  algbio/practical-omnitigs#163 · Filter by author sebschmi opened on Sep 29, 2020 · Milestone A pipeline

• Add runtime statistics to algorithms

  enhancement
  algbio/practical-omnitigs#158 · Filter by author sebschmi opened on Sep 25, 2020 · Milestone A pipeline

• Implement command to convert the bcalm2 output into an efficient binary representation and make this usable in all other commands (except verify)

  enhancement
  algbio/practical-omnitigs#96 · Filter by author sebschmi opened on Aug 26, 2020
  1

• Check if input genome characters are valid

  enhancement
  algbio/practical-omnitigs#86 · Filter by author sebschmi opened on Aug 24, 2020 · Milestone A pipeline

• Compute the DAG of SCCs and check if it is a path

  enhancement
  algbio/practical-omnitigs#81 · Filter by author sebschmi opened on Aug 24, 2020 · Connectivity checks and resolution

• Print more detailed statistics about WCCs and SCCs

  enhancement
  algbio/practical-omnitigs#80 · Filter by author sebschmi opened on Aug 21, 2020 · Connectivity checks and resolution

• Make decompose WCC method return a node mapping instead of a vector of graphs

  enhancement
  algbio/practical-omnitigs#78 · Filter by author sebschmi opened on Aug 20, 2020 · Connectivity checks and resolution

• Why can there be an uneven amount of compactable unitigs?

  question
  algbio/practical-omnitigs#60 · Filter by author sebschmi opened on Aug 7, 2020

• Use petgraph traits whereever possible

  enhancement
  algbio/practical-omnitigs#29 · Filter by author sebschmi opened on Jul 22, 2020
  1

• Add serde support for all datastructures

  enhancement
  algbio/practical-omnitigs#25 · Filter by author sebschmi opened on Jul 21, 2020

• Use bio crate to represent genomes

  enhancement
  algbio/practical-omnitigs#18 · Filter by author sebschmi opened on Jul 20, 2020