ATAGA

A tool for mapping of Next Generation of Sequencing (NGS) data on a reference genome.

A personal project that falls within the course named "HMSN205 - Introduction à l'algorithme pour la bioinformatique", taught under Master 1 Bioinformatics at the Faculty of Science of the University of Montpellier.

CONCEPTS

• 2-byte and 4-byte nucleotide coding

• fine management of the memory

• Suffix table

• KMERs

AUTHOR

Abdoulaye DIALLO (abdouldiallo30@yahoo.fr)

Supervisor (s)

Alban MANCHERON (LIRMM - Laboratoire d’Informatique, de Robotique et de Microélectronique de Montpellier)

DATE

mars 2016