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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    248 431

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 207 95

  3. dragonstar2019 dragonstar2019 Public

    137 93

  4. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 117 8

  5. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 104 35

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 96 54

Repositories

Showing 10 of 101 repositories
  • PipeVar Public

    Pipeline to call phenotype variant

    WGLab/PipeVar’s past year of commit activity
    Nextflow 0 0 0 0 Updated Apr 10, 2026
  • PhenoGPT2 Public

    PhenoGPT2 is an advanced phenotype recognition model, leveraging the robust capabilities of large language models.

    WGLab/PhenoGPT2’s past year of commit activity
    Python 6 MIT 1 1 0 Updated Apr 9, 2026
  • MultiSHAP Public
    WGLab/MultiSHAP’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Apr 8, 2026
  • REPAIR Public

    REPAIR: Reranking via Pairwise Residual Correction for Long-Tailed Classification

    WGLab/REPAIR’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Apr 3, 2026
  • novamod Public

    ML project for de novo anomaly-detection-based modification discovery

    WGLab/novamod’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 1, 2026
  • CellPathway Public

    Cell-type-specific pathway analysis for noncoding de novo variants

    WGLab/CellPathway’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 30, 2026
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH’s past year of commit activity
    Python 19 MIT 3 4 0 Updated Mar 28, 2026
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    WGLab/ContextSV’s past year of commit activity
    C++ 2 MIT 0 5 0 Updated Mar 27, 2026
  • PhenoSnap Public

    Rapid extraction of phenotypes and medical entities into Phenopackets from natural texts

    WGLab/PhenoSnap’s past year of commit activity
    Python 1 0 0 0 Updated Mar 26, 2026
  • PhenoSS Public

    Phenotype semantic similarity-based approach for rare disease prediction and patient clustering

    WGLab/PhenoSS’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 5, 2026
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