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[E2E] Process PTM Dataset with Response Curves

Status: Open.

#170 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Feb 19, 2026

column mapping issue for DIANN output files

Status: Open.

#157 In Vitek-Lab/MSstatsShiny;

· mhmd-tarek opened on Feb 19, 2026

Add ProteinProspectorToMSstatsPTM Function to MSstatsShiny

Status: Open.

#149 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Jan 13, 2026

Add ProteinProspectorToMSstatsTMTFormat Function to MSstatsShiny

Status: Open.

#147 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Jan 13, 2026

Integrate new converters to MSstatsShiny

Status: Open.

#146 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Jan 13, 2026

Infer run order based on R.Run Date for Spectronaut MSstats+

Status: Open.

#141 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Dec 9, 2025

MSstatsformat option cannot upload for Protein/peptide

Status: Open.

#113 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Aug 27, 2025

ms stats shiny wont read annotation file for processing of fragpipe output

Status: Open.

#107 In Vitek-Lab/MSstatsShiny;

· johnkollias opened on May 27, 2025

Error with inputs from MSfragger/Philosopher

Status: Open.

#100 In Vitek-Lab/MSstatsShiny;

· hsm2139 opened on Nov 22, 2024

don't read the annotations file

Status: Open.

#86 In Vitek-Lab/MSstatsShiny;

· jfertaj opened on Feb 12, 2024

Add logging to application

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In Vitek-Lab/MSstatsShiny;

· devonjkohler opened on May 31, 2022