Feature/add outrider

[lonnekevanbrussel]

Outrider script for RNA seq pipeline in main.nf (main.yml) and outrider.R

[BasMonkey]

Nice work!

Some minor remarks:

• Some files are missing a newline at the end of the file. Why it's important? See https://stackoverflow.com/a/729795
• Try to be consistent with the indentation across your files / code
• See individual files for the remarks per line

[BasMonkey]

Missing newline at the end of this file, see https://stackoverflow.com/a/729795

[BasMonkey]

Try to avoid print statements, since they might get lost in the stdout. If you want to save / view the data of a variable, write it to a logfile instead

[BasMonkey]

Same goes for this print statement

[BasMonkey]

Same goes for these print statements aswell

[BasMonkey]

And for these

[BasMonkey]

Missing newline at the end of this file

[BasMonkey]

This is one of the two files that uses two spaces as indentation (instead of four). Try to be consistent throughout your code

[BasMonkey]

Try to avoid print statements, since they might get lost in the stdout. If you want to save / view the data of a variable, write it to a logfile instead

[BasMonkey]

This is one of the two files that uses two spaces as indentation (instead of four). Try to be consistent throughout your code

[BasMonkey]

It may be better to fill this path as a parameter or via a config file. The path may change and to include that change a new release of the software must be made. (or worse: this line gets overlooked at all)

[ellendejong]

The base image is using version 1.18.1--r43hf17093f_0. Folder name Outrider/1.20.0/ doesnot match.