Townsend Lab, Yale School of Public Health
- 14 followers
- 135 College Street, New Haven, CT
- http://medicine.yale.edu/lab/townsend/
- Jeffrey.Townsend@Yale.edu
Popular repositories Loading
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cancereffectsizeR
cancereffectsizeR PubliccancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer
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KRAS_G12C_analysis
KRAS_G12C_analysis PublicAnalysis within The likelihood of heterogeneity or additional mutation in KRAS or associated oncogenes to compromise targeting of oncogenic KRAS G12C
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SNV_selection_intensity
SNV_selection_intensity PublicAnalyses associated with manuscript https://www.biorxiv.org/content/early/2018/02/27/229724 ... updated pipeline with R package here: https://github.com/Townsend-Lab-Yale/cancereffectsizeR
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LUAD-PhyLCT
LUAD-PhyLCT PublicCode and data for local consolidative treatement with Mahal and Yu.
R 2
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pALL-mutation-effects
pALL-mutation-effects PublicAnalysis of cancer effect in pediatric B-ALL and T-ALL, based on data from Brady 2022 (Nature Genetics)
R 2
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Repositories
- lung-smoking Public
To study the mutational and adaptive landscape of LUAD and how it is altered by tobacco smoke using an aggregated LUAD dataset
Townsend-Lab-Yale/lung-smoking’s past year of commit activity - UCSC_GenomeBrowser_Hub Public
BED files containing cancer effect size (CES) values mapped to genomic coordinates, formatted for visualization on the UCSC Genome Browser.
Townsend-Lab-Yale/UCSC_GenomeBrowser_Hub’s past year of commit activity - melanoma-age Public
Townsend-Lab-Yale/melanoma-age’s past year of commit activity - journal_targeter Public
Web app for journal suitability metrics, based on manuscript title, abstract and references.
Townsend-Lab-Yale/journal_targeter’s past year of commit activity - Integrated_LUAD_Data_and_Code Public
A comprehensive LUAD dataset of 9424 samples with whole-genome sequence data (WGS), whole-exome sequence data (WES), and targeted sequence data (TGS), including 1082 smokers and 642 never-smokers.
Townsend-Lab-Yale/Integrated_LUAD_Data_and_Code’s past year of commit activity - Prostate_Stages Public
Townsend-Lab-Yale/Prostate_Stages’s past year of commit activity - cca_mutations_and_effects Public
Analysis of mutational signatures and somatic selection from sequencing of cholangiocarcinomas
Townsend-Lab-Yale/cca_mutations_and_effects’s past year of commit activity
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