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49 changes: 43 additions & 6 deletions tests/test_preopt_gfnff.py
Original file line number Diff line number Diff line change
@@ -1,23 +1,28 @@
"""GFN-FF (xtb) metal-capable pre-optimization backend (M-METAL).

RDKit can't pre-optimize a transition-metal complex; GFN-FF (Grimme's general
force field, via xtb-python + ASE) can. These tests run only where xtb is
installed (Linux pip wheel / conda) and are skipped otherwise.
force field, via xtb-python + ASE) can. These tests run only where GFN-FF can
*actually run* and are skipped otherwise.

Gating on package presence alone (``preopt._XTB_AVAILABLE``) isn't enough: under
heavy parallel load (``pytest -n auto``), conda's ``libxtb`` shared library
intermittently fails its first ``dlopen`` in a worker and raises
``xtb C extension unimportable, cannot use C-API`` at *run time* — which turned
these tests into flaky failures instead of skips (CI's pip-wheel xtb is
unaffected; the app degrades to an honest no-op). The ``xtb_only`` marker below
therefore probes with a single real GFN-FF run, cached per worker process.
"""

from __future__ import annotations

import os
from functools import lru_cache

import pytest

import quantui.preopt as preopt_mod
from quantui.molecule import Molecule

xtb_only = pytest.mark.skipif(
not preopt_mod._XTB_AVAILABLE, reason="xtb (GFN-FF backend) not installed"
)


def _metal(entry_id: str = "inorganic-cisplatin") -> Molecule:
from quantui import molecule_library as ml
Expand Down Expand Up @@ -51,6 +56,38 @@ def _water() -> Molecule:
)


@lru_cache(maxsize=1)
def _gfnff_runnable() -> bool:
"""True only if a real GFN-FF run actually succeeds in this worker process.

Stronger than ``preopt._XTB_AVAILABLE`` (package presence): it performs one
minimal GFN-FF relaxation. If conda's ``libxtb`` can't ``dlopen`` here (the
parallel-load flake described in the module docstring), it returns False and
every ``@xtb_only`` test skips cleanly instead of failing. Cached per process
(the failure is a first-load failure), so a worker where the extension does
load has it primed — and the run-time flake can't recur — for the rest of the
tests, while the probe cost is paid once. Never raises. A genuine GFN-FF
regression still surfaces: the extension loads (probe True), the tests run,
and their assertions fail.
"""
if not preopt_mod._XTB_AVAILABLE:
return False
try:
preopt_mod._xtb_gfnff_relax(_distorted_metal(), 1)
except Exception:
return False
return True


xtb_only = pytest.mark.skipif(
not _gfnff_runnable(),
reason=(
"GFN-FF (xtb) backend can't run here — package missing, or libxtb's "
"C-API failed to load (e.g. conda libxtb under heavy parallel load)"
),
)


class TestEngineSelection:
@xtb_only
def test_metal_routes_to_gfnff(self):
Expand Down