RFC 0004: Refactor all remaining sampling logic from R / Python to C++#356

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andrewherren wants to merge 96 commits intomainfrom

cpp_sampler_loop_refactor_rfc_0004

Commits on Apr 9, 2026

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Beginning to add random effects to C++ interface
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Commits on Apr 20, 2026

Updating RFX interface
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Commits on Apr 21, 2026

Working random effects implementation
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Merge branch 'main' into cpp_sampler_loop_refactor_rfc_0004
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Merge branch 'main' into cpp_sampler_loop_refactor_rfc_0004
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Merge branch 'cpp_sampler_loop_refactor_rfc_0004' of github.com:StochasticTree/stochtree into cpp_sampler_loop_refactor_rfc_0004
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Fix unit tests that assume variance forest can be combined with observation weights
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Make correlation check less stringent in cloglog test
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Switch from correctness to validity tests for cloglog since performance metrics are too noisy and stochastic for a unit test
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Standardize python code format with ruff
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Initial (incomplete) implementation of mult-chain sampler
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Commits on Apr 22, 2026

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Commits on Apr 24, 2026

Initial implementation of BCF in C++ wrapper
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Commits on Apr 29, 2026

Commits on May 1, 2026