Make containment-based selection first-class - #1

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DanielSprockett wants to merge 10 commits into

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containment-selector-integration

Commits on Jun 10, 2026

Add package scaffold, four selector implementations, and tests
DanielSprockett
committed
83c22c1
Add full pipeline modules, three new selectors, and formatter suite
DanielSprockett
committed
1ad2c20
Add adaptive-k estimators (scree_elbow, similarity_gap, saturation_curve) and --k auto CLI flag
DanielSprockett
committed
c1a01dd
Add GTDB gather pipeline, species-level analysis scripts, and assembly weight computation
DanielSprockett
committed
c72e7c1
Add selector comparison and adaptive-k analysis scripts
DanielSprockett
committed
a27838f
Wire ContainmentSelector into the selector interface, CLI, and pipeline
DanielSprockett
committed
7b45c6f

Commits on Jun 11, 2026