Oligos#1

Merged

Spill-Tea merged 18 commits into

mainfrom

Jun 27, 2025

Commits on Jun 25, 2025

Commits on Jun 26, 2025

feat(headers.common): Implement, extract, and cleanup common utilities for converting between c char and python objects.
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feat(_oligos): Improve stretch function, and to a minor degree, nrepeats function. Finish cimport of common utilities and extrapolate changes.
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fix(pyproject): Include pxd files as part of package data for correct build during testing.
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feat(_oligos): Drastically improve speed of palindrom function by over an order of magnitude. Extract out portion of complement to act inplace on stringview.
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chore(_oligos): change variable names of palindrome function to be more readable.
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chore(tests): Include additional unit tests for palindrome function.
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feat(_oligos): Improve nrepeats function speed by an order of magnitude.
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chore(tests): Include additional unit tests for higher order n for nrepeats across multiple phases.
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chore(headers.oligos): Add license to file.
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