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exploring the LILY dataset

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Name		Name	Last commit message	Last commit date
.claude/agents		.claude/agents
.ipynb_checkpoints		.ipynb_checkpoints
IODP-LILY-f50bc53		IODP-LILY-f50bc53
catboost_info		catboost_info
ml_models		ml_models
paper_draft		paper_draft
paper_plots		paper_plots
paper_plots_code		paper_plots_code
papers		papers
vae_outputs		vae_outputs
vae_v2_1_outputs		vae_v2_1_outputs
vae_v2_2_outputs		vae_v2_2_outputs
vae_v2_5_outputs		vae_v2_5_outputs
vae_v2_7_outputs		vae_v2_7_outputs
vae_v2_8_outputs		vae_v2_8_outputs
vae_v2_outputs		vae_v2_outputs
.gitignore		.gitignore
.python-version		.python-version
ANALYSIS_NOTEBOOKS.md		ANALYSIS_NOTEBOOKS.md
CLAUDE.md		CLAUDE.md
CLEAN_SEMISUPERVISED_SUMMARY.md		CLEAN_SEMISUPERVISED_SUMMARY.md
DEVELOPMENT_SETUP.md		DEVELOPMENT_SETUP.md
FUZZY_MATCHING_EXPERIMENT.md		FUZZY_MATCHING_EXPERIMENT.md
GEOSCIENCE_RESULTS.md		GEOSCIENCE_RESULTS.md
GIT_WORKFLOW.md		GIT_WORKFLOW.md
IODP_ML_DATA_COLLECTION_RECOMMENDATIONS.md		IODP_ML_DATA_COLLECTION_RECOMMENDATIONS.md
LILY-AVS.ipynb		LILY-AVS.ipynb
LILY-RSC.ipynb		LILY-RSC.ipynb
MISSING_DATA_INVESTIGATION_SUMMARY.md		MISSING_DATA_INVESTIGATION_SUMMARY.md
NON_GAUSSIAN_CLUSTERING_METHODS.md		NON_GAUSSIAN_CLUSTERING_METHODS.md
RETRAIN_VAE_FILTERED_PLAN.md		RETRAIN_VAE_FILTERED_PLAN.md
SCIENTIFIC_INSIGHTS.md		SCIENTIFIC_INSIGHTS.md
SEMISUPERVISED_VAE_CLASSIFIER_SUMMARY.md		SEMISUPERVISED_VAE_CLASSIFIER_SUMMARY.md
SEMISUP_VAE_V2_14_SUMMARY.md		SEMISUP_VAE_V2_14_SUMMARY.md
VAE_CLASSIFIER_INVESTIGATION_SUMMARY.md		VAE_CLASSIFIER_INVESTIGATION_SUMMARY.md
VAE_FINAL_SUMMARY.md		VAE_FINAL_SUMMARY.md
VAE_MODELS.md		VAE_MODELS.md
VAE_PROJECT_COMPLETE_HISTORY.md		VAE_PROJECT_COMPLETE_HISTORY.md
VAE_QUICK_SUMMARY.txt		VAE_QUICK_SUMMARY.txt
VAE_SCIENTIFIC_METHODOLOGY.md		VAE_SCIENTIFIC_METHODOLOGY.md
VAE_V2_6_10_SUMMARY.md		VAE_V2_6_10_SUMMARY.md
additional_feature_coverage.log		additional_feature_coverage.log
analyze_additional_feature_coverage.py		analyze_additional_feature_coverage.py
analyze_alternative_features.py		analyze_alternative_features.py
analyze_binning_strategy.py		analyze_binning_strategy.py
analyze_classifier_confusion.py		analyze_classifier_confusion.py
analyze_feature_coverage_overlap.py		analyze_feature_coverage_overlap.py
analyze_latent_distribution.py		analyze_latent_distribution.py
analyze_latent_distributions.py		analyze_latent_distributions.py
analyze_lithology_distribution.py		analyze_lithology_distribution.py
analyze_measurement_coverage.py		analyze_measurement_coverage.py
analyze_mscl_overlap_50cm.py		analyze_mscl_overlap_50cm.py
analyze_no_ngr_coverage.py		analyze_no_ngr_coverage.py
analyze_rgb_density.py		analyze_rgb_density.py
analyze_train_test_distribution_mismatch.py		analyze_train_test_distribution_mismatch.py
analyze_vae_latent_distributions.ipynb		analyze_vae_latent_distributions.ipynb
analyze_vae_latent_distributions.py		analyze_vae_latent_distributions.py
architecture_comparison.log		architecture_comparison.log
beta_1e10_to_1_results.csv		beta_1e10_to_1_results.csv
beta_1e10_to_1_test.log		beta_1e10_to_1_test.log
beta_1e10_to_1_test_unbuffered.log		beta_1e10_to_1_test_unbuffered.log
beta_annealing.log		beta_annealing.log
beta_annealing_gpu_test.log		beta_annealing_gpu_test.log
beta_annealing_results.csv		beta_annealing_results.csv
beta_end_grid_search.csv		beta_end_grid_search.csv
beta_end_grid_search.log		beta_end_grid_search.log
beta_end_grid_search.png		beta_end_grid_search.png
beta_final_test_performance.csv		beta_final_test_performance.csv
beta_grid_search_v2_13.log		beta_grid_search_v2_13.log
beta_grid_search_v2_13.py		beta_grid_search_v2_13.py
beta_proper_validation.log		beta_proper_validation.log
beta_schedule_comparison.csv		beta_schedule_comparison.csv
beta_schedule_test.log		beta_schedule_test.log
beta_sweep.log		beta_sweep.log
beta_targeted.log		beta_targeted.log
beta_targeted_results.csv		beta_targeted_results.csv
beta_validation_selection.csv		beta_validation_selection.csv
binning_analysis.log		binning_analysis.log
binning_strategy_final.md		binning_strategy_final.md
borehole-age.ipynb		borehole-age.ipynb
borehole_coverage_summary.csv		borehole_coverage_summary.csv
borehole_coverage_viz.log		borehole_coverage_viz.log
borehole_coverage_viz_v2.log		borehole_coverage_viz_v2.log
borehole_total_depths.csv		borehole_total_depths.csv
borehole_viz.log		borehole_viz.log
borehole_viz2.log		borehole_viz2.log
bulk_density_gra_borehole_split.log		bulk_density_gra_borehole_split.log
bulk_density_gra_model.cbm		bulk_density_gra_model.cbm
bulk_density_gra_model.py		bulk_density_gra_model.py
bulk_density_gra_model_borehole_split.cbm		bulk_density_gra_model_borehole_split.cbm
bulk_density_gra_training.log		bulk_density_gra_training.log
check_additional_measurements.py		check_additional_measurements.py
check_data_coverage.py		check_data_coverage.py
check_mad_pretraining_potential.py		check_mad_pretraining_potential.py
check_original_split.py		check_original_split.py
clean_classifier_comparison_results.json		clean_classifier_comparison_results.json
clean_classifier_training.log		clean_classifier_training.log
compare_all_combos.py		compare_all_combos.py
compare_v2_1_vs_v2_2.py		compare_v2_1_vs_v2_2.py
compare_v2_1_vs_v2_3.py		compare_v2_1_vs_v2_3.py
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exploring the LILY dataset

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