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Drop conda dependency: replace hmmer/prodigal/seqkit with pyhmmer/pyrodigal/Python - #98

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Robaina merged 4 commits into

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issue97-drop-conda-pyhmmer-pyrodigal

Jun 18, 2026

Merged

Drop conda dependency: replace hmmer/prodigal/seqkit with pyhmmer/pyrodigal/Python#98
Robaina merged 4 commits into
mainfrom
issue97-drop-conda-pyhmmer-pyrodigal

Commits on Jun 18, 2026
- Drop conda dependency: replace hmmer/prodigal/seqkit with pyhmmer/pyrodigal/Python
  
  Robaina
  and
  claude
  committed
  d83a2e5
- CI: switch tests to pure pip; fix black + biopython 1.87 compatibility
  
  Robaina
  and
  claude
  committed
  00a6d81
- Fix pandas 3.0 compatibility: replace DataFrame.applymap with fillna
  
  Robaina
  and
  claude
  committed
  b9c4c5b
- docs: update install instructions for pip-only Pynteny
  
  Robaina
  and
  claude
  committed
  c94f58f