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Feat/tiling values - #9

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kisside wants to merge 79 commits into

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feat/tiling-values

Draft

Feat/tiling values#9
kisside wants to merge 79 commits into
masterfrom
feat/tiling-values

Commits on Aug 19, 2026
- feat: aggregators
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- feat: head
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- feat: encoder
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- feat: config related
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- !!! squash typing
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- feat: main config
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- fix: rename mammaprint index
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- feat: trainer and main models
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- feat: datasets
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- feat: data
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- feat: data and datasets 2
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- fix: models
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- feat: take logic from UC
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- feat: training configs
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- feat: regression running configs
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- feat: binary metrics (but for regression)
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- feat: more training configs
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- feat: joint loss
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- feat: 2 layer mlp
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- feat: new config structure
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- fix: configs, squash
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- fix: joint f1
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- feat: eval test set after fit
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- fix: calculate classification metrics from logits correctly
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- chore: trim modeling configs and metrics
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- refactor: adopt data card schema in train configs
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- fix: require l3 embedded data card
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- fix: address modeling runtime issues
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- fix: correct metric weighting and transformer layers
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- chore: satisfy Python lint checks
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Commits on Aug 21, 2026
- feat: data exploration
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- feat: diff script
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- squash data exploration
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- data exploration: split
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- data exloration script results
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- feat: old mask coverage
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- feat: new mask coverage
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- feat: mask thresholds
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- fix: change repo
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- squash epithel
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- fix: epith
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- feat: demo tiled data
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- feat: demo embed
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- feat: eval test set after fit
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- feat: continuous tiling
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- feat: new data
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- fix: ignore null epit mask
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- feat: remove memory estimates tiling
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- feat: tiling diagnostics
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- feat: change file suffixes
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- fix: mlkit update for embed
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- fix: tiling renaming
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- fix: 1 tb ram :(
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- fix: change train configs
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- feat: more configs
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- feat: transformer configs
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- feat: spatial
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- feat: resume test
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- feat: cancer masks
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- feat: missing masks
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- fix cancer heatmap probability scoring
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- fix: remove duplicate logging import
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- fix: restore level 2 embedded data config
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- feat: mask coverage threshold
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- feat: cancer threshold
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Commits on Aug 24, 2026
- fix: empty slides
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Commits on Aug 28, 2026
- feat: split dataset
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Commits on Aug 29, 2026
- feat: cancer masks
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Commits on Sep 1, 2026
- feat: add all-mask tiling threshold scan
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Commits on Sep 3, 2026
- feat: epithelium masks
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Commits on Sep 7, 2026
- feat: add staggered all-mask tiling scans
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- feat: filter embedded tiles by mask scores
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Commits on Sep 19, 2026
- feat: epithel masks
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- Add resumable training sweeps and artifact downloads
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- Recover filtered embedding artifacts
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Commits on Sep 24, 2026
- feat: sweep runner
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- tmp: ignore h100
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Commits on Sep 27, 2026
- feat: cap sweep submissions without delay
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Commits on Oct 6, 2026
- feat: refill sweep GPU queues every five minutes
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Commits

Commits on Aug 19, 2026

Commits on Aug 21, 2026

Commits on Aug 24, 2026

Commits on Aug 28, 2026

Commits on Aug 29, 2026

Commits on Sep 1, 2026

Commits on Sep 3, 2026

Commits on Sep 7, 2026

Commits on Sep 19, 2026

Commits on Sep 24, 2026

Commits on Sep 27, 2026

Commits on Oct 6, 2026