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1. PGEcore PGEcore Public

   Core set of scripts to perform common downstream analysis functionalities for Plasmodium. Includes wrappers of tools and bespoke code to perform common tasks.

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2. pmotools-python pmotools-python Public

   Toolkit for working with Portable Microhaplotype Objects (PMOs)

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3. plasmodiumdrugres plasmodiumdrugres Public

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4. recombuddy recombuddy Public

   Simple simulator of Plasmodium falciparum genomic data that captures patterns of polyclonality and relatedness through recombination.

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5. portable-microhaplotype-object portable-microhaplotype-object Public

   A schema to define the minimum amount of data needed to export a microhaplotype calling pipeline analysis with associated metadata

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6. PMO_Docs PMO_Docs Public

   Documentation for Portable Microhaplotype Object Tools

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