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6 changes: 3 additions & 3 deletions mimic-iv-ed/buildmimic/postgres/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,11 +11,11 @@ git clone https://github.com/MIT-LCP/mimic-code.git
cd mimic-code
# download data
wget -r -N -c -np --user <USERNAME> --ask-password https://physionet.org/files/mimic-iv-ed/2.2/
mv physionet.org/files/mimiciv-iv-ed mimiciv && rmdir physionet.org/files && rm physionet.org/robots.txt && rmdir physionet.org
mv physionet.org/files/mimic-iv-ed mimiciv && rmdir physionet.org/files && rm physionet.org/robots.txt && rmdir physionet.org
# if mimiciv not exists
# createdb mimiciv
psql -d mimiciv -f mimic-iv-ed/buildmimic/postgres/create.sql
psql -d mimiciv -v ON_ERROR_STOP=1 -v mimic_data_dir=mimiciv/2.2/ed -f load_gz.sql
psql -d mimiciv -v ON_ERROR_STOP=1 -v mimic_data_dir=mimiciv/2.2/ed -f mimic-iv-ed/buildmimic/postgres/load_gz.sql
```


Expand All @@ -35,7 +35,7 @@ After the database exists, the schema and tables can be created under this datab
psql -d mimic -f create.sql
```

Finally, loading the data into this data requires specifying the database name with `-d mimic` again:
Finally, loading the data into this database requires specifying the database name with `-d mimic` again:

```sh
psql -d mimic -v ON_ERROR_STOP=1 -v mimic_data_dir=<INSERT MIMIC FILE PATH HERE> -f load.sql
Expand Down