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docs: sync Snakemake 2.9.1 setup and logging guide AlphaPulldown-CI-CD #1718: Commit 2a76845 pushed by DimaMolod
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Graph Update: pip in /. #1575095350 Dependency Graph #6: by dependabot Bot
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refactor: group feature and prediction modules into packages AlphaPulldown-CI-CD #1717: Commit 46acfa9 pushed by DimaMolod
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main
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AlphaPulldown v2.9.0 AlphaPulldown-CI-CD #1716: Release 2.9.0 published by DimaMolod
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Merge pull request #642 from KosinskiLab/feat/af2-local-mmseqs AlphaPulldown-CI-CD #1715: Commit 9124e4d pushed by DimaMolod
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feat: local MMseqs2 features for AlphaFold 2, with insertions for both backends AlphaPulldown-CI-CD #1714: Pull request #642 synchronize by DimaMolod
11m 53s feat/af2-local-mmseqs
feat/af2-local-mmseqs
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feat: local MMseqs2 features for AlphaFold 2, with insertions for both backends AlphaPulldown-CI-CD #1713: Pull request #642 synchronize by DimaMolod
13m 29s feat/af2-local-mmseqs
feat/af2-local-mmseqs
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feat: local MMseqs2 features for AlphaFold 2, with insertions for both backends AlphaPulldown-CI-CD #1712: Pull request #642 synchronize by DimaMolod
12m 40s feat/af2-local-mmseqs
feat/af2-local-mmseqs
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feat: local MMseqs2 features for AlphaFold 2, with insertions for both backends AlphaPulldown-CI-CD #1711: Pull request #642 synchronize by DimaMolod
12m 49s feat/af2-local-mmseqs
feat/af2-local-mmseqs
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feat: local MMseqs2 features for AlphaFold 2, with insertions for both backends AlphaPulldown-CI-CD #1710: Pull request #642 synchronize by DimaMolod
12m 25s feat/af2-local-mmseqs
feat/af2-local-mmseqs
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feat: local MMseqs2 features for AlphaFold 2, with insertions for both backends AlphaPulldown-CI-CD #1709: Pull request #642 synchronize by DimaMolod
12m 26s feat/af2-local-mmseqs
feat/af2-local-mmseqs
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feat: local MMseqs2 features for AlphaFold 2, with insertions for both backends AlphaPulldown-CI-CD #1708: Pull request #642 synchronize by DimaMolod
12m 53s feat/af2-local-mmseqs
feat/af2-local-mmseqs
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feat: local MMseqs2 features for AlphaFold 2, with insertions for both backends AlphaPulldown-CI-CD #1707: Pull request #642 opened by DimaMolod
20m 24s feat/af2-local-mmseqs
feat/af2-local-mmseqs
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fix: key MSA overlap on accession, not on the residue string AlphaPulldown-CI-CD #1706: Commit 5e2da98 pushed by DimaMolod
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fix: keep AF2 chain IDs at A, B, C under padding and out-of-order asy… AlphaPulldown-CI-CD #1705: Commit 7a9b665 pushed by DimaMolod
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fix: keep AF2 chain IDs at A, B, C under padding and out-of-order asym_id AlphaPulldown-CI-CD #1704: Pull request #641 opened by DimaMolod
13m 11s fix/af2-chain-index-padding-and-order
fix/af2-chain-index-padding-and-order
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chore: drop the scratch files a stray "git add ." swept into the repo AlphaPulldown-CI-CD #1703: Commit 1538e95 pushed by DimaMolod
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feat: compare MSA backends by overlap and Neff, not by counting AlphaPulldown-CI-CD #1702: Commit 264d60b pushed by DimaMolod
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docs: put the MMseqs2 section under a cut, and stop calling a ratio "… AlphaPulldown-CI-CD #1701: Commit 2bf9a8d pushed by DimaMolod
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AlphaPulldown v2.8.0 AlphaPulldown-CI-CD #1700: Release 2.8.0 published by DimaMolod
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chore: release 2.8.0 AlphaPulldown-CI-CD #1699: Commit 284407b pushed by DimaMolod
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fix: say so when MMseqs2 crashes instead of reporting nothing AlphaPulldown-CI-CD #1698: Commit 8c22c33 pushed by DimaMolod
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feat: search RNA chains through the local MMseqs2 path (#639) AlphaPulldown-CI-CD #1697: Commit bed01e2 pushed by DimaMolod
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feat: optional Foldseek + ESMFold structural template search AlphaPulldown-CI-CD #1696: Pull request #638 synchronize by DimaMolod
12m 10s feat/foldseek-esmfold-templates
feat/foldseek-esmfold-templates
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feat: search RNA chains through the local MMseqs2 path AlphaPulldown-CI-CD #1695: Pull request #639 synchronize by DimaMolod
12m 26s feat/mmseqs2-rna-msas
feat/mmseqs2-rna-msas
12m 26s