Releases: KPMP/libra-data
Releases · KPMP/libra-data
1.10
Release v1.9
What's Changed
- KPMP-5715: set globus_dlu_status to NULL by @HaneenT in #104
- KPMP-5737: Parameterized the dlu hostname so emails are correct by @rlreamy in #105
- Update dlu_state.py by @rlreamy in #106
- KPMP-5364: replace tissue_type with enrollment_category by @HaneenT in #107
- KPMP-5680: add slack alert for db errors by @HaneenT in #108
- KPMP-5753_add-column by @Dert1129 in #109
- KPMP-5865: adjust bulk upload script by @HaneenT in #110
- Check for TIS field in manifest file by @HaneenT in #111
- generate a new uuid for files, and pick up files in waiting status by @Dert1129 in #112
- Kpmp 5967 tableau data by @zwright in #113
- Kpmp 5775 recall pkg by @zwright in #114
- KPMP-5775: empty modifications on first create by @zwright in #115
- Kpmp 5775 recall pkg by @zwright in #116
- KPMP-5998: view name change by @zwright in #117
- Kpmp 6024 biomarker add by @zwright in #118
- Kpmp 5999 biopsy only by @zwright in #119
- Kpmp 6012 dashboard push by @zwright in #120
- Kpmp 6022 add i ds easy by @zwright in #121
- KPMP-6001: pin Docker ver by @zwright in #122
- KPMP-6043: add release date by @zwright in #123
- KPMP-5856: update package type name by @HaneenT in #124
- Kpmp 5680 spectrack alert by @zwright in #125
- Kpmp 5776 recall endpoint by @HaneenT in #126
- add dlu_upload_type to dlu_package_inventory table by @Dert1129 in #127
- KPMP-5774: fix permissions & mongo errors by @HaneenT in #128
- KPMP-5364: fix KeyError & track modified records by @HaneenT in #129
- Kpmp 5774 recall permissions by @HaneenT in #131
- Kpmp 6038 slide manifest import watcher by @HaneenT in #130
- Kpmp 6182 fix recall permissions by @HaneenT in #132
- KPMP-6186: Stop removing file info before we use it by @rlreamy in #133
- Update README.md by @rlreamy in #134
- add chages to change log by @Dert1129 in #135
- merge develop into master for DLU release by @Dert1129 in #136
Full Changelog: v1.8.1...v1.9
Contributors
zwright, rlreamy, and 2 other contributors
Assets 2
Release v1.8.1
Contributors
rlreamy and Dert1129
Assets 2
Release v1.8
What's Changed
- Push master changes back to develop by @rlreamy in #73
- Kpmp 5371 folders by @zwright in #74
- add new package type for bulk upload by @Dert1129 in #76
- KPMP-4980: upgrade python version to fix vulns by @HaneenT in #75
- Update rebuild.sh by @HaneenT in #77
- Create changelog.md by @rlreamy in #78
- KPMP-5415_chown-dirs by @Dert1129 in #79
- KMPP-5423: fix the spectrack update error by @HaneenT in #80
- Kpmp 5434 md5 checker by @rlreamy in #81
- KPMP-5434: Fix reporting so we do not report incorrect checksum when … by @rlreamy in #82
- KPMP-5438_make-workflow-file by @Dert1129 in #83
- add environment var by @Dert1129 in #85
- use double quotes by @Dert1129 in #86
- KPMP-5439_checkMd5s by @rlreamy in #87
- KPMP-5472_remove-spectrack-connection by @Dert1129 in #88
- KPMP-5506: add single-cell package type to bulk uploader by @rlreamy in #90
- Kpmp 5506 raji bulk upload by @rlreamy in #91
- Update process_bulk_uploads.py by @rlreamy in #92
- Kpmp 5527 insert na by @rlreamy in #93
- add flask logging to check spectrack.log by @Dert1129 in #94
- add gunicorn and run in entry point by @Dert1129 in #95
- KPMP-5581: remove biopsy query, update field names by @HaneenT in #96
- Release v1.8 by @rlreamy in #97
- Kpmp 5523 fixes to dlu watcher by @rlreamy in #98
- fix dlu-watcher by @rlreamy in #99
Full Changelog: v1.7...v1.8
Contributors
zwright, rlreamy, and 2 other contributors
Assets 2
Release v1.7
What's Changed
- KPMP-4653_dlu-watcher by @Dert1129 in #28
- KPMP-4658: added route to return ready packages by @HaneenT in #29
- fix dictionary by @Dert1129 in #30
- Kpmp 4652 update move endpoint by @HaneenT in #31
- KPMP-4658: Updated endpoints in README by @HaneenT in #32
- Kpmp 4672 bulk uploads by @zwright in #33
- Kpmp 4673 move files by @zwright in #34
- Kpmp 4795 handle segmentataion by @zwright in #35
- Handle missing redcap IDs by @zwright in #36
- KPMP-4795: Return just results by @zwright in #37
- KPMP-4656: updated DLUWatcher process by @HaneenT in #38
- KPMP-4783: conda install line by @zwright in #39
- KPMP-4691: added endpoint for package globus_dlu_status by @HaneenT in #40
- KPMP-4843_DMD_Table_Changes by @zwright in #41
- KPMP-4857: Field changes by @zwright in #42
- KPMP-4874: use dict by @zwright in #43
- KPMP-4656: updated file mover by @HaneenT in #44
- Kpmp 4655 update dluwatcher docker file by @HaneenT in #45
- Kpmp 4656 fix logging messages by @HaneenT in #46
- updated package validation to allow subfolders by @HaneenT in #47
- add more logging for future debugging by @Dert1129 in #48
- Edit Dockerfile by @Dert1129 in #49
- Kpmp 4771 add file paths by @HaneenT in #50
- implement .dockerignore file by @Dert1129 in #51
- Kpmp 5069 bulk to globus by @zwright in #52
- Kpmp 5128 fill redcap by @zwright in #53
- KPMP-4771: fix checksum logic by @HaneenT in #54
- ignore top level directory by @Dert1129 in #55
- KPMP-5124: add the adjudication data by @zwright in #56
- KPMP-5128: Check if subject id is redcap id by @zwright in #57
- KPMP-5126: add timestamp to dlu_created field by @HaneenT in #58
- add blank adjudicated category by @rlreamy in #59
- set promotion status to None by @Dert1129 in #60
- Update Dockerfile by @rlreamy in #61
- KPMP-5151_update-mongo by @Dert1129 in #62
- KPMP-5126: made the collection timezone-aware by @HaneenT in #63
- Update data_management.py by @rlreamy in #64
- Kpmp 5273 clear cache on file move by @rlreamy in #65
- Kpmp 5362 fixes to file mover by @rlreamy in #67
- Update dlu_filesystem.py by @rlreamy in #68
- KPMP-5340: lowered timeout in watch_files.py to 60 seconds by @HaneenT in #66
- KPMP-5189: updated queries to select/insert into the new tables in dmd by @HaneenT in #69
- KPMP-5189: Fixed dlu_package_inventory queries by @HaneenT in #70
- KPMP-5385: Fix to get spectrack ingest working once again on prod by @rlreamy in #71
- Release v4.0 by @rlreamy in #72
New Contributors
Full Changelog: v1.2...v1.7
Contributors
zwright, rlreamy, and 2 other contributors
Assets 2
Release v1.2
Incorporates some changes to the DMD tables (column names, etc)
Fix bug in the file mover that was preventing moves from occurring.
What's Changed
- Kpmp 4244 new st packages by @zwright in #21
- KPMP-4264_DMD_DB_Changes by @zwright in #22
- Kpmp 4266 slide scan status by @rlreamy in #23
- Merge Up to Zarr Handling by @zwright in #24
- KPMP-4266: Adding check before inserting into spectrack specimen table by @rlreamy in #25
- Kpmp 4407 fix bug by @rlreamy in #26
- Release v1.2 for libra-data by @rlreamy in #27
Full Changelog: v1.1...v1.2
Contributors
zwright and rlreamy
Assets 2
Release v1.1
First release of the Data Management Dashboard (DMD) service.