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WalkthroughDocumentation expanded in data_management/README.md to describe DLU Watcher functionality, including slide renaming workflows, processing steps for manifest imports and curation, file movement operations to DataLake, and a known Docker macOS issue. No functional code changes. Changes
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Actionable comments posted: 2
🧹 Nitpick comments (2)
data_management/README.md (2)
122-126: Consider simplifying wordy phrases for better readability.Several phrases could be made more concise:
- "new records" → "records" (appears multiple times)
- "all of the" → "all the"
- "in order to" → "to"
These changes would improve readability without altering meaning.
139-139: Consider improving technical terminology and phrasing.A few optional improvements:
- "md5checksums" → "MD5 checksums" (standard capitalization and spacing)
- "extremely large files" → "very large files" or specify a size threshold
These changes would enhance technical clarity.
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📒 Files selected for processing (1)
data_management/README.md
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| The majority of the functionality for processing slide renaming lives in slide_management.py in services. | ||
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| The first step is to process the new rows in slide_manifest_import and verify that we have all of the neccesary information in order to do an import. If the process is not picking up new records in the slide_manifest_import, check the log files in dlu_watcher for potential errors as we have not created a record in the slide_scan_curation table at this point, and do not want to since there are issues. |
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Fix spelling error: "neccesary" → "necessary".
The word "neccesary" is misspelled and should be corrected to "necessary".
📝 Proposed fix
-The first step is to process the new rows in slide_manifest_import and verify that we have all of the neccesary information in order to do an import. If the process is not picking up new records in the slide_manifest_import, check the log files in dlu_watcher for potential errors as we have not created a record in the slide_scan_curation table at this point, and do not want to since there are issues.
+The first step is to process the new rows in slide_manifest_import and verify that we have all the necessary information to do an import. If the process is not picking up new records in the slide_manifest_import, check the log files in dlu_watcher for potential errors as we have not created a record in the slide_scan_curation table at this point, and do not want to since there are issues.📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| The first step is to process the new rows in slide_manifest_import and verify that we have all of the neccesary information in order to do an import. If the process is not picking up new records in the slide_manifest_import, check the log files in dlu_watcher for potential errors as we have not created a record in the slide_scan_curation table at this point, and do not want to since there are issues. | |
| The first step is to process the new rows in slide_manifest_import and verify that we have all the necessary information to do an import. If the process is not picking up new records in the slide_manifest_import, check the log files in dlu_watcher for potential errors as we have not created a record in the slide_scan_curation table at this point, and do not want to since there are issues. |
🧰 Tools
🪛 LanguageTool
[style] ~126-~126: Consider removing “of” to be more concise
Context: ...manifest_import and verify that we have all of the neccesary information in order to do an...
(ALL_OF_THE)
[grammar] ~126-~126: Ensure spelling is correct
Context: ...port and verify that we have all of the neccesary information in order to do an import. I...
(QB_NEW_EN_ORTHOGRAPHY_ERROR_IDS_1)
[style] ~126-~126: Consider a more concise word here.
Context: ...e have all of the neccesary information in order to do an import. If the process is not pic...
(IN_ORDER_TO_PREMIUM)
[style] ~126-~126: ‘new records’ might be wordy. Consider a shorter alternative.
Context: ...mport. If the process is not picking up new records in the slide_manifest_import, check the...
(EN_WORDINESS_PREMIUM_NEW_RECORDS)
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| #### Non-WSI | ||
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| This will do a number of checks to make sure everything is copasetic and then call out to the appropriate locations to create new records in the databases, create directories in the data lake, and copy the data into the data lake. This also includes generating the md5checksums to store in the databases and can sometimes cause issues when we have extremely large files. |
There was a problem hiding this comment.
Fix spelling error: "copasetic" → "copacetic".
The word "copasetic" is misspelled and should be corrected to "copacetic".
📝 Proposed fix
-This will do a number of checks to make sure everything is copasetic and then call out to the appropriate locations to create new records in the databases, create directories in the data lake, and copy the data into the data lake. This also includes generating the md5checksums to store in the databases and can sometimes cause issues when we have extremely large files.
+This will do a number of checks to make sure everything is copacetic and then call out to the appropriate locations to create new records in the databases, create directories in the data lake, and copy the data into the data lake. This also includes generating the md5checksums to store in the databases and can sometimes cause issues when we have extremely large files.📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| This will do a number of checks to make sure everything is copasetic and then call out to the appropriate locations to create new records in the databases, create directories in the data lake, and copy the data into the data lake. This also includes generating the md5checksums to store in the databases and can sometimes cause issues when we have extremely large files. | |
| This will do a number of checks to make sure everything is copacetic and then call out to the appropriate locations to create new records in the databases, create directories in the data lake, and copy the data into the data lake. This also includes generating the md5checksums to store in the databases and can sometimes cause issues when we have extremely large files. |
🧰 Tools
🪛 LanguageTool
[grammar] ~139-~139: Ensure spelling is correct
Context: ...er of checks to make sure everything is copasetic and then call out to the appropriate lo...
(QB_NEW_EN_ORTHOGRAPHY_ERROR_IDS_1)
[style] ~139-~139: ‘new records’ might be wordy. Consider a shorter alternative.
Context: ... to the appropriate locations to create new records in the databases, create directories in...
(EN_WORDINESS_PREMIUM_NEW_RECORDS)
[grammar] ~139-~139: Ensure spelling is correct
Context: ...lake. This also includes generating the md5checksums to store in the databases and can somet...
(QB_NEW_EN_ORTHOGRAPHY_ERROR_IDS_1)
[style] ~139-~139: As an alternative to the over-used intensifier ‘extremely’, consider replacing this phrase.
Context: ...can sometimes cause issues when we have extremely large files. ## Known Bug There is a known [...
(EN_WEAK_ADJECTIVE)
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