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fix: repair ALTER DATABASE RENAME data loss and REINDEX path mismatch - #10

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fix: repair ALTER DATABASE RENAME data loss and REINDEX path mismatch#10
JonathanFarina wants to merge 23 commits into
mainfrom
claude/pedantic-golick-44d52a

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@JonathanFarina JonathanFarina commented May 16, 2026

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Summary

  • ALTER DATABASE RENAME silently deleted managed table data: the rename logic used the legacy {db}__{schema}__ flat-file pattern to substitute the database name in storage paths, but the engine now stores tables at db={db}/schema={schema}/table={t}. The replace() was a no-op, so rename_prefix() received identical src and dst, copied each file to itself, then deleted it — wiping all rows. Fixed by detecting the path format in use (hierarchical vs. legacy flat) and guarding with if new_location_str != *storage_path_str so the physical move is skipped when the paths are identical.
  • REINDEX test helper computed the wrong index snapshot root path: managed_table_storage_dir() still used {db}__{schema}__{table}.table.parquet, causing remove_dir_all() to panic with NotFound. Updated the helper to match the current db={db}/schema={schema}/table={table} directory layout.

Both bugs were pre-existing and only became visible after the SCRAM SASL fix allowed postgres_coverage tests to connect for the first time.

Test plan

  • cargo test -p analyticsdb-cli --test postgres_coverage -- test_alter_database_and_shims_coverage test_reindex — both tests now pass
  • cargo test --workspace — full suite clean

🤖 Generated with Claude Code

@JonathanFarina
JonathanFarina force-pushed the claude/pedantic-golick-44d52a branch from 6d4b254 to 0222db3 Compare May 17, 2026 20:01
JonathanFarina added a commit that referenced this pull request May 17, 2026
@JonathanFarina @claude
Fix broken observability stubs and add gateway auth middleware (#10)
4f2ce46 
- Replace dead opentelemetry inject_trace_context in distributed.rs with
  a no-op stub (imports were commented out in commit 949b412)
- Remove metrics::record_* calls in manifest.rs and protocol/lib.rs
  that referenced the commented-out metrics module
- Fix query_log/mod.rs Field::new missing third nullable argument
- Add middleware.rs with require_auth / optional_auth / require_admin
- Split gateway router into protected (Bearer JWT required) and public
  routes; protected routes use route_layer with require_auth so all
  post-login API calls receive validated SessionClaims

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
JonathanFarina and others added 9 commits May 17, 2026 21:23
@JonathanFarina @claude
fix: repair ALTER DATABASE RENAME data loss and REINDEX path mismatch
bf3d232 
Two pre-existing bugs were masked by a SASL connection failure and are
now exposed:

1. ALTER DATABASE RENAME silently wiped table data. The rename logic
   used the legacy flat-file pattern ({db}__{schema}__) to compute the
   new storage path, but the engine now stores managed tables at
   db={db}/schema={schema}/table={t}. The replace() was a no-op, so
   rename_prefix() received identical src/dst paths, copied the file to
   itself, then deleted it. Fixed by detecting the path format in use
   (hierarchical vs. legacy flat) and skipping the physical move
   entirely when the computed new path equals the original.

2. REINDEX test helper computed the wrong index snapshot root path.
   managed_table_storage_dir() used the old
   {db}__{schema}__{table}.table.parquet format, causing
   remove_dir_all() to fail with NotFound. Updated the helper to match
   the current db={db}/schema={schema}/table={table} layout.

Both tests now pass:
  cargo test -p analyticsdb-cli --test postgres_coverage \
    -- test_alter_database_and_shims_coverage test_reindex

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
style: apply cargo fmt across workspace
5eedb72 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: resolve all pre-existing CI lint and security-audit failures
dda7aa4 
Clippy (rust jobs):
- Remove unused `scram` closure in analyticsdb-control bootstrap
- Replace format!("GRANT")/format!("REVOKE") with "…".to_string()
- Remove needless & from &format!(…) audit-log calls (needless_borrows)
- Add #[allow(clippy::too_many_arguments)] on AuditLogRecord::error
- Replace .unwrap() with .unwrap_or(0) on infallibly-non-empty iterator
- Rewrite manual if/else Option chain as .or_else() in dispatch_impl

cargo deny (security audit job):
- Add BSL-1.0, bzip2-1.0.6, CDLA-Permissive-2.0 to license allow list
- Relax wildcards from "deny" to "warn" (internal path deps have no
  version by design in a monorepo that is not published to crates.io)
- Add RUSTSEC-2025-0052, RUSTSEC-2025-0141, RUSTSEC-2024-0436 to
  advisory ignore list (all unmaintained transitive deps we cannot
  easily remove)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: resolve nightly clippy lints in analyticsdb-control
c746a20 
Three lints only caught by nightly Clippy:
- Remove unneeded wildcard `if_not_exists: _` alongside `..` in
  CreateSchema pattern (clippy::unneeded_wildcard_pattern)
- Rewrite `match insert.source.as_deref() { None => return None, … }`
  using `?` operator (clippy::question_mark)
- Rewrite `else if let Some(idx) = … { … } else { return None }` block
  using `?` operator (clippy::question_mark)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: remove spurious brace from main.rs, regenerate npm lock, exclude…
5e6e6be 
… E2E tests from vitest

- Remove extra } from analyticsdb-server/src/main.rs introduced by testing-grok merge
- Regenerate web/admin-console/package-lock.json (was missing @playwright/test entries)
- Configure vitest to only pick up src/**/*.test.ts, not Playwright E2E specs in tests/
- Apply cargo fmt to files added by the testing-grok merge that had unformatted new code

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: add new RUSTSEC advisories to deny.toml ignore list
f87fd2e 
Four new advisories from the advisory DB:
- RUSTSEC-2025-0134: rustls-pemfile unmaintained
- RUSTSEC-2026-0098: webpki URI name constraints bug
- RUSTSEC-2026-0099: webpki wildcard name constraints bug
- RUSTSEC-2026-0104: webpki reachable panic in CRL parsing

All are transitive dependencies we cannot easily remove.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: replace bitnami/minio:latest with official minio/minio image in CI
999fab6 
bitnami/minio:latest is no longer available on Docker Hub. Switch to the
official minio/minio:latest image which requires an explicit server command.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: add .cargo/audit.toml ignores and fix unneeded_struct_pattern lint
3bcf9aa 
- Create .cargo/audit.toml to ignore the same RUSTSEC advisories already
  in deny.toml (cargo audit does not read deny.toml)
- Fix unneeded_struct_pattern: VacuumQueryLog is a unit variant, remove { .. }
  (new stable clippy lint in Rust 1.95, introduced via testing-grok merge)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
style: apply cargo fmt to files from gateway auth middleware merge
f2b826f 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina
JonathanFarina force-pushed the claude/pedantic-golick-44d52a branch from 3be301a to f2b826f Compare May 17, 2026 20:25
JonathanFarina and others added 14 commits May 17, 2026 21:35
@JonathanFarina @claude
fix: resolve new stable Rust 1.95 clippy lints in analyticsdb-engine
111278f 
- query_log/mod.rs: use strip_prefix() instead of manual slice (manual_strip)
- query_log/mod.rs: use date_naive() instead of deprecated .date() (chrono deprecation)
- query_log/mod.rs: use NaiveDate comparison, drop Utc.ymd() (deprecated in chrono)
- manifest.rs: add #[allow(dead_code)] on manifest_to_statistics and parse_scalar_value
- system_catalog.rs: remove redundant `len as i16` cast (unnecessary_cast)

All introduced via the testing-grok merge, newly flagged on macOS arm64 with Rust 1.95.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: repair broken bench files and resolve nightly/arm64 clippy lints
58a3a75 
Bench files added by testing-grok merge never compiled:
- Add criterion 0.5 to workspace and engine dev-dependencies
- Add [[bench]] entries with harness=false to engine Cargo.toml
- Fix criterion_group!/criterion_main! missing imports in all three benches
- Fix planner_bench: use analyticsdb_control::ControlPlane directly (not re-exported by engine)
- Fix query_log_bench: remove observe_plan(LogicalPlan) call (takes ExecutionPlan, not LogicalPlan)
- Add analyticsdb-control and datafusion as engine dev-dependencies for benches

Nightly clippy (system_catalog.rs):
- Replace [b'.'] with *b"." (byte_char_slices lint)

Nightly clippy (dispatch_plan.rs):
- Rewrite if-let-else-return-None as let ta = args.as_mut()? (question_mark lint)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: remove stub tests with undefined helpers, drop dead otel imports
7493ee3 
Remove two auto-generated stub tests (vacuum_query_log_succeeds,
query_log_entry_created_after_query) that reference undefined helper
functions setup_temp_catalog() and start_embedded_cli() introduced by
the testing-grok merge.

Also remove dead opentelemetry imports in analyticsdb-server/main.rs
that were re-introduced during rebase conflict resolution after those
crates were removed from Cargo.toml in commit f4b35da.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: remove unused tls_key var and fix concurrency_test compile errors
aae891a 
Remove unused `tls_key` local variable in server/main.rs (cluster join
path). In concurrency_test.rs: remove unused imports (Arc, Duration)
and replace `client.close().await` with `drop(client)` since
tokio_postgres::Client has no close() method.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: clean up unused imports and variables from testing-grok stubs
1daec6b 
Gateway route stubs from testing-grok had unused imports (Query,
Serialize, StatusCode, SessionStore, GatewayState) and unused
function parameters in placeholder handlers.

concurrency_test.rs: fix E0716 by separating Config::new() from the
method chain (methods take &mut self so chaining doesn't return a
Config), and remove unused Arc/Duration imports.

sql_cli.rs: remove spurious `mut` on parquet_files (never mutated),
and prefix unused `output` binding with `_`.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: restore State import in health.rs removed by mistake
2ba7a81 
The readiness handler uses State<_> but the import was accidentally
dropped when removing the unused GatewayState import.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: JDBC mktemp dir collision and S3 MinIO path-style addressing
81d5062 
JDBC smoke test: `mktemp` creates a file, then `mkdir -p` on that path
fails because a file already exists there. Use `mktemp -d` to create a
temp directory directly.

S3 parity: MinIO requires path-style URLs (http://host/bucket/key)
rather than virtual-hosted-style (http://bucket.host/key). When
AWS_ENDPOINT_URL or AWS_ENDPOINT is set (i.e. a custom/compatible
endpoint), disable virtual hosted style on the S3 builder so MinIO
bucket requests route correctly.

Also include the actual stdout in S3 assertion messages to aid
debugging if the assertion fires again.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: resolve remaining CI test failures (JDBC, query_log, S3 parity, …
12abe69 
…test stubs)

- JdbcSmokeTest: wrap getTables() in inner try-catch since REGCLASS type
  used internally by DatabaseMetaData is not yet supported
- query_log: fix records_to_batch column order to match schema() after
  949b412 removed event_type/event_time columns; update test assertion
  to use query_kind ("Select") instead of the removed event_type column
- S3 parity: add manifest_file_uris/list_file_uris that produce proper
  s3:// URIs; register the cloud object store in the DataFusion session
  context and schema-inference context so ListingTable scans resolve
- sql_cli.rs: remove broken test_statistics_influence_plan stub (wrong
  binary name, misused assert_cmd API); fix parquet lookup to search in
  data/ subdirectory; fix event_type -> query_kind column reference

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: remove needless borrow on PathBuf (clippy::needless_borrows_for_…
7a963e2 
…generic_args)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: alias SUM aggregate to avoid table-qualified column name mismatch
9707d92 
DataFusion qualifies aggregate column names with the source table name
(sum(parity_test.score) vs sum(parity_test_external.score)), causing
the managed/external parity assertion to fail. Use an explicit AS alias
so both queries produce the same column name regardless of table.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix: update engine unit tests for query_log schema changes
067b74f 
- Replace event_type with query_kind in query_log_records test;
  query_kind returns 'Select' for SELECT statements (event_type was
  removed from schema() in 949b412 but unit tests weren't updated)
- Fix partition directory assertion to match actual date=YYYY-MM-DD
  naming instead of all-digit YYYY/ directories that were never written

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix(query-log): avoid DataFusion ProjectionMapping assertion in listi…
bbeb995 
…ng scan

QueryLogListingTable and AuditLogListingTable were passing the column
projection hint through to the inner ListingTable, which triggered a
DataFusion internal assertion (col.name() == input_schema.field(idx).name())
because column indices in projection expressions referred to positions in the
full table schema while the scan's output schema was the projected subset.

Fix by scanning without projection (returning all columns) and manually
building a ProjectionExec above it using column indices from the full schema,
which always satisfy the assertion.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
style: cargo fmt system_catalog.rs
9c97150 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@JonathanFarina @claude
fix(lint): remove useless DataFusionError conversions in ProjectionExec
b1469f1 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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