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Imageomics / TreeOfLife-toolbox Public

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Convert hybrid HDF5+Parquet data into wds#57

Draft

thompsonmj wants to merge 10 commits into

mainImageomics/TreeOfLife-toolbox:mainfrom

hybrid2wdsImageomics/TreeOfLife-toolbox:hybrid2wdsCopy head branch name to clipboard

Conversation Commits10 (10)Checks Files changed

Draft

Convert hybrid HDF5+Parquet data into wds#57
thompsonmj wants to merge 10 commits into
mainfrom
hybrid2wds

Commits

Commits on Jun 30, 2026

Convert the hybrid HDF5+Parquet dataset into WebDataset training shards

thompsonmj
and
claude
committed
Document WebDataset creation from the hybrid HDF5+Parquet format

thompsonmj
and
claude
committed
Exit the Spark filter process once filtering completes

thompsonmj
and
claude
committed
Rename the tool to tol_hybrid_to_wds and drop empty-taxonomy entries during the build

thompsonmj
and
claude
committed
Relocate the one-off taxonomy-scrub scripts out of scripts/

thompsonmj
and
claude
committed

Commits on Jul 1, 2026

Un-force-wrap comments and markdown.
thompsonmj
committed
Move the WDS companion scripts under the tool
thompsonmj
committed
Relocate the standalone single-node converter out of the repo root
thompsonmj
committed
Relocate the one-off taxon_com audit out of the repo root
thompsonmj
committed
Update the WDS docs for the relocated scripts
thompsonmj
committed

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