Search results

Prioritize cREs for CRISPRi validation

grnGene regulatory networksGene regulatory networks

multiome10X Multiome analysis10X Multiome analysis

Status: Open.

#16 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Repeat and expand variant effect predictions

multiome10X Multiome analysis10X Multiome analysis

s2fSequence-to-function modelingSequence-to-function modeling

snm3csnm3C-seq analysissnm3C-seq analysis

Status: Open.

#15 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Retrain CpGNet methylation models on new pseudobulk data

s2fSequence-to-function modelingSequence-to-function modeling

snm3csnm3C-seq analysissnm3C-seq analysis

Status: Open.

#14 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Rebuild base-GRNs for SC-beta cell types

grnGene regulatory networksGene regulatory networks

Status: Open.

#13 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Integrative analysis: snm3C-seq × Dominguez2020 bulk methylation

integrationCross-dataset integrative analysisCross-dataset integrative analysis

snm3csnm3C-seq analysissnm3C-seq analysis

Status: Open.

#12 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Reprocess snm3C-seq with new samples

snm3csnm3C-seq analysissnm3C-seq analysis

Status: Open.

#11 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Integrative analysis: igvf SC-islet Multiome × primary islet Multiome

integrationCross-dataset integrative analysisCross-dataset integrative analysis

multiome10X Multiome analysis10X Multiome analysis

Status: Open.

#10 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Integrative analysis: igvf Multiome × Augsornworawat2023 Multiome

integrationCross-dataset integrative analysisCross-dataset integrative analysis

multiome10X Multiome analysis10X Multiome analysis

Status: Open.

#9 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Begin v3 with IGVF uniform pipeline processed data

infrastructureData upload, pipeline, toolingData upload, pipeline, tooling

multiome10X Multiome analysis10X Multiome analysis

Status: Open.

#8 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Identify gene modules correlated with INS secretion score and/or disease

grnGene regulatory networksGene regulatory networks

multiome10X Multiome analysis10X Multiome analysis

Status: Open.

#7 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Upload v2 data to GCP

infrastructureData upload, pipeline, toolingData upload, pipeline, tooling

multiome10X Multiome analysis10X Multiome analysis

Status: Open.

#6 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026

Finalize peak calling

multiome10X Multiome analysis10X Multiome analysis

Status: Open.

#5 In IGVF-UCSD/.github;

· adamklie opened on Mar 23, 2026