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@GorBEEa

GorBEEa

An ERC-funded project at Basque Centre for Climate Change (BC3). All code is shared here to promote Open Science through transparency and reproductibility

GorBEEa 🐝

Understanding biodiversity–ecosystem function and biodiversity–stability relationships across spatial and organizational scales

GorBEEa is an ERC Consolidator Grant project led by Ainhoa Magrach at the Basque Centre for Climate Change (BC3) (2024–2028; ERC Grant Agreement No. 101086771).

The project investigates how biodiversity influences ecosystem functioning and stability across spatial, temporal and organizational scales, using plant–pollinator communities and their interaction networks as a model system. GorBEEa combines field observations, ecological network analysis, experimental approaches, predictive modelling, and molecular and genomic tools to understand how global change and ecological perturbations affect biodiversity and ecosystem dynamics.

A major component of the project focuses on wild pollinators and their gut microbiomes, integrating metabarcoding, metagenomics and bioinformatics to investigate microbial community composition, functional diversity, plant–pollinator interactions, and the effects of environmental change and managed honeybee introductions.

This repository contains code, workflows and computational resources developed for the molecular ecology, microbiome and bioinformatics components of the GorBEEa project.

Project website: https://gorbeea.bc3research.org/
Institution: Basque Centre for Climate Change (BC3)
Project period: 2024–2028
Funding: European Research Council (ERC) Consolidator Grant, Horizon Europe
Grant Agreement: 101086771

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  1. Microbiome_baseline Microbiome_baseline Public

    Includes data and analysis of data on microbiome composition through time and space of Bombus pascuorum individuals captured in Gorbea Natural Park

    R 1

  2. Comparison_interaction_methodologies Comparison_interaction_methodologies Public

    Here we have code and data used to compare 3 different methodologies used to infer interaction frequencies between plants and pollinators: observations, gut contents, pollen balls

    HTML 1

Repositories

Showing 6 of 6 repositories
  • .github Public

    Public profile README for the GorBEEa organization

    GorBEEa/.github's past year of commit activity
    0 0 0 0 Updated Sep 15, 2026
  • Comparison_interaction_methodologies Public

    Here we have code and data used to compare 3 different methodologies used to infer interaction frequencies between plants and pollinators: observations, gut contents, pollen balls

    GorBEEa/Comparison_interaction_methodologies's past year of commit activity
    HTML 1 CC0-1.0 0 0 0 Updated Sep 11, 2026
  • Microbiome_baseline Public

    Includes data and analysis of data on microbiome composition through time and space of Bombus pascuorum individuals captured in Gorbea Natural Park

    GorBEEa/Microbiome_baseline's past year of commit activity
    R 1 CC0-1.0 0 0 0 Updated Aug 7, 2026
  • DADA2 Public

    A general dada2 pipeline for amplicon processing

    GorBEEa/DADA2's past year of commit activity
    R 1 CC0-1.0 0 0 0 Updated Feb 4, 2025
  • qiime2 Public

    A general qiime2 pipeline for amplicon processing

    GorBEEa/qiime2's past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • DIPC_HPC_settings Public

    Guidelines, recommendations, and tips for working on the DIPC High Performance Cluster. All commands have been tested on Hyperion and are expected to be compatible with Atlas EDR and FDR systems as well

    GorBEEa/DIPC_HPC_settings's past year of commit activity
    1 0 0 0 Updated Sep 4, 2024

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