feat: translate and rotate domains to clip the main frame

[jafranc]

This PR introduces a new clipToMainFrame.py modifiers that derive the translation and rotation a hexahedral domain has undergone and revert it so the mesh has one extermal vertices set to (0,0,0) and is aligned with (X,Y,Z)

This PR includes:

• clipToMainFrame.py that introduces:

  • a VTK Object ClipToMainFrame that inherits from vtkLandMarkTransform setting its SourcePts and TargetPts from mesh. It leverages to its best Object Bounding Box Tree struct to get is local frame.
  • a VTK Filter ClipToMainFrame that inherits from vtkTransformFilter and is handling vtkMultiBlockDataSet by fetching the block whose cell is selected as origin and computing rotation, translation from it to be applied globally

• test_clipToMainFrame.py that includes such :

  • hexahedral mesh randomly rotated and translated and test the above utlis. For now it is only checking that the mesh:

    • did not change in number of cells and points
    • that the lowest bound is indeed (0,0,0)
    • that the domaine is not scaled by checking diagonal meas persistence
    • that it is align with (X,Y,Z)

  • a multiBlock mesh imported from reader to check integration (but nothing else)

[RomainBaville]

The tests failed for me, may be an issue with the origin.

[RomainBaville]

An internal logger have been inplemented in geos.utils.Logger. You may give the chose to the user to use a personal handler (usefull for paraview) an use the internal logger by defaults.

[RomainBaville]

It seems good for me, you just may add typing for all your variable.