Something makes distributed version fail at given nSets:
data(GIST)
params <- CogapsParams(seed=42,
nIterations = 100,
nPatterns = 2,
sparseOptimization = as.logical(0),
distributed="genome-wide")
cpus <- parallel::detectCores()
params <- setDistributedParams(params, nSets = cpus+1)
data(GIST)
cg <- CoGAPS(GIST.matrix, params=params)
featureLoadings <- cg@featureLoadings
sampleFactors <- cg@sampleFactors
yields
Error in .local(.Object, ...) : no gene names given
In addition: Warning message:
In checkInputs(data, uncertainty, allParams) :
running distributed cogaps without mtx/tsv/csv/gct data
Something makes distributed version fail at given nSets:
yields