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fix: serialize persistence commits and retain failed writes - #3
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Serialize Flush and deletion commits with consistent lock ordering; failed writes remain dirty, and updates made during IO retain their pending state. Filesystem regressions cover retries, concurrent flush, deletion and active-run shutdown. Correct the existing restart test to wait for its required thread-created state. Validation: Linux full Go suite passed; go test -race ./internal/engine -count=1 -timeout=120s passed. Closes #2.