TemplateFlow spaces as siibra objects

[AhmetNSimsek]

• spaces (volumes)
• spaces (surfaces)
• labelled maps
• statistical maps

Note: some spaces are divided in cohorts which seem to be distinct enough that they could be represent with their own space configuration. This is what I chose for now since variant has to be used for other things such as image modality, resolution, and other descriptive attributes.

Suggested typical workflow example

import siibra
from nilearn import plotting

siibra.extend_configuration(siibra.create_templateflow_configs())
siibra.spaces.dataframe

MNI152NLin6Asym = siibra.spaces.get(
    "MNI ICBM 152 non-linear 6th Generation Asymmetric"
)
MNI152NLin6Asym

print(MNI152NLin6Asym.name)
print(MNI152NLin6Asym.publications)
print(MNI152NLin6Asym.description)

for template in MNI152NLin6Asym.volumes:
    print(template.variant)

tmp_img = MNI152NLin6Asym.get_template("T1 weighted (res-01)").fetch()
plotting.view_img(tmp_img, bg_img=None, symmetric_cmap=False, cmap="gray")

List all template flow spaces

import siibra
siibra.extend_configuration(siibra.create_templateflow_configs())
for s in siibra.spaces:
    if s.name.startswith("[TemplateFlow]"):
        print(s)

[codecov]

Codecov Report

❌ Patch coverage is 23.93162% with 89 lines in your changes missing coverage. Please review.
✅ Project coverage is 46.43%. Comparing base (92f81cf) to head (b34f6b6).
⚠️ Report is 2 commits behind head on main.

Files with missing lines	Patch %	Lines
siibra/configuration/templateflow.py	22.60%	89 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #716      +/-   ##
==========================================
- Coverage   46.78%   46.43%   -0.35%     
==========================================
  Files          73       74       +1     
  Lines        7731     7847     +116     
==========================================
+ Hits         3617     3644      +27     
- Misses       4114     4203      +89     

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