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Make VCF header-field matching data-driven (field as selector), aligning VCF with the SAM header_field design

Status: Open.

#237 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 20, 2026

Resolve reference assembly (and patch) from GenBank accession via a deriver, not regex ranges

Status: Open.

#236 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 20, 2026

Remove or justify the now-unused get_contig_lines helper

Status: Open.

#233 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 19, 2026

Fold BED evidence into the CachedEvidence family (evidence.py)

Status: Open.

#223 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 18, 2026

Enforce explicit encoding on file opens (PLW1514) + sweep ~62 bare open() sites

Status: Open.

#217 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 18, 2026

Add run-to-run classification diff to catch output drift across full runs

Status: Open.

#197 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 16, 2026

Resolve the header_classifier backward-compat re-exports: confirm a consumer or remove them

Status: Open.

#188 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 12, 2026

Add a classification drift check: run classify, diff against a committed baseline, judge expected changes

Status: Open.

#186 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 12, 2026

The rule engine clobbers ExtendedFileInfo.file_format, so callers must fabricate synthetic filenames

Status: Open.

#160 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 10, 2026

Graph extension list is written three times with no drift guard (anchor fixes two; extension_map needs a test)

Status: Open.

#159 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 10, 2026

FetchError conflates permanent and transient failures, so retry and a negative cache are impossible

Status: Open.

#158 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 10, 2026

Mirror availability report: HEAD every catalog md5 and find files the AnVIL S3 mirror no longer holds

Status: Open.

#156 In DataBiosphere/meta-disco;

· NoopDog opened on Jul 10, 2026