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Pull requests: DataBiosphere/azul

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Pull requests list

Bump pyasn1 from 0.6.1 to 0.6.2 dependencies [subject] External software packages that the system depends on operator [process] To be addressed by whoever is operator python Pull requests that update python code
#7703 opened Jan 16, 2026 by dependabot bot Loading…
@achave11-ucsc
1
Backport 2bb957b0 (DataBiosphere/azul-private#321, PR #7696)
#7702 opened Jan 16, 2026 by achave11-ucsc Loading…
13 of 51 tasks
@achave11-ucsc
2
Fix: Python license file has the wrong contents (#7372)
#7701 opened Jan 16, 2026 by dsotirho-ucsc • Draft 100+
@dsotirho-ucsc
2
Add support for HCA atlas (#7128) partial [process] PR is does not completely resolve associated ticket reindex:dev [process] PR requires reindexing dev upgrade [process] PR includes commit requiring manual upgrade
#7700 opened Jan 15, 2026 by achave11-ucsc Loading… 100+
1
@hannes-ucsc @achave11-ucsc
3
Document procedure to run Data Browser locally (#7643)
#7698 opened Jan 15, 2026 by dsotirho-ucsc Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
11
Fix: Incorrect domain specified in configuration setting instructions for ZAP scans (#7689)
#7697 opened Jan 14, 2026 by dsotirho-ucsc Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
4
Fix: Mirror URI in manifest /index/files response is set for MA files (#7687)
#7693 opened Jan 13, 2026 by nadove-ucsc Loading… 100+
1
@hannes-ucsc @nadove-ucsc
5
Fix: Contribute retry throttle threshold exceeded yet again during prod reindex (#7544)
#7692 opened Jan 12, 2026 by dsotirho-ucsc Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
4
Upgrade software dependencies 2026-01-05 (#7677) backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:shared [process] PR requires deploying `shared` component reqs [process] PR includes commit requiring ``make requirements``
#7688 opened Jan 9, 2026 by achave11-ucsc Loading…
25 of 83 tasks
1
@hannes-ucsc @achave11-ucsc
2
Bump werkzeug from 3.1.4 to 3.1.5 dependencies [subject] External software packages that the system depends on python Pull requests that update python code
#7685 opened Jan 9, 2026 by dependabot bot Loading…
@achave11-ucsc
Fix: External DRS URIs in lm10 snapshots break /repository/files (#7660) 1 review [process] Lead requested changes once
#7683 opened Jan 7, 2026 by nadove-ucsc Loading… 100+
1
@hannes-ucsc @nadove-ucsc
6
Promotion 2026-01-06 anvilprod (#7678) 0 reviews [process] Lead didn't request any changes API API change affecting callers backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:shared [process] PR requires deploying `shared` component reindex:anvilprod [process] PR requires reindexing anvilprod reqs [process] PR includes commit requiring ``make requirements``
#7682 opened Jan 7, 2026 by achave11-ucsc Loading…
28 of 73 tasks
1
@achave11-ucsc
3
Fix: Many false positives for waf_blocked alarm in idle deployments (#7642) 1 review [process] Lead requested changes once
#7657 opened Dec 18, 2025 by dsotirho-ucsc Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
12
Fix: Content type in mirror info objects inconsistent with index (#7193, #7675) reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7656 opened Dec 18, 2025 by nadove-ucsc Loading… 100+
2
@nadove-ucsc
12
Fix: OpenSearch queries are huge (#7580)
#7650 opened Dec 16, 2025 by nadove-ucsc • Draft 100+
@nadove-ucsc
2
Fix: Accumulator overflow during aggregation (#6793) API API change affecting callers reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7641 opened Dec 12, 2025 by dsotirho-ucsc • Draft 100+
1
@dsotirho-ucsc
21
Fix: Frequent timeouts from TDR (#7452) 1 review [process] Lead requested changes once
#7623 opened Dec 8, 2025 by dsotirho-ucsc Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
12
Add Azul GitHub project and priority support to schedule.py (#7474, #7548) 2 reviews [process] Lead requested changes twice
#7622 opened Dec 8, 2025 by achave11-ucsc Loading… 100+
2
@hannes-ucsc @achave11-ucsc
19
Upgrade GitLab to Amazon Linux 2023 (#6160, #4890) 3 reviews [process] Lead requested changes thrice backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component
#7533 opened Oct 30, 2025 by achave11-ucsc Loading… 100+
2
@hannes-ucsc @achave11-ucsc
41
Fix: Manifest content hash computation times out (#6123) 3 reviews [process] Lead requested changes thrice API API change affecting callers
#7258 opened Jul 8, 2025 by dsotirho-ucsc Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
41
Make GitLab instance CIS level 2 compliant (#5990)
#6694 opened Nov 8, 2024 by dsotirho-ucsc • Draft 100+
1
@dsotirho-ucsc
2
Fix: Can't use curl to download a single manifest in one invocation (#5918) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers
#6099 opened Mar 26, 2024 by dsotirho-ucsc Loading… 100+
1
@dsotirho-ucsc
107
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