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caretMultimodal failure on run fold model for simuldated data with dt = 0, rho = 0.5

Status: Open.

#109 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Feb 26, 2026

Replace subworkflow/helpers.nf print_parameters to programatically log params

Status: Open.

#101 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jan 20, 2026

Update doc in how to add a method as part of the MESSI pipeline

Status: Open.

#99 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jan 20, 2026

Add caretMultimodal as part of the pipeline

Status: Open.

#98 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jan 20, 2026

DIABLO-full design on thca and brca dataset gives zero devision warning, since only having predicted one label due to low predicted probability

Status: Open.

#77 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Aug 4, 2024

Some improvements to address for current pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#75 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jul 31, 2024

Not clear data preprocessing on handling different types of omics data

Status: Open.

#74 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jul 31, 2024

Creating MultiAssayExperiment with experiments and colData matching criteria

Status: Open.

#72 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jul 19, 2024

Adding method from template is not stable at this moment?

Status: Open.

#70 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jul 12, 2024

To add new method, need to first load conda or pip to have deps ready

Project Setup

Status: Open.

#68 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jul 10, 2024

Add manual time snapshotting in select feature logic

Status: Open.

#67 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jul 5, 2024

Potential datasets

Status: Open.

#65 In CompBio-Lab/MESSI-pipeline;

· tonyliang19 opened on Jul 3, 2024