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fix: Codex review fixes + version normalization to 1.5 - #116

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release/1.5-version-normalization
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fix: Codex review fixes + version normalization to 1.5#116
Coding-Dev-Tools wants to merge 16 commits into
mainfrom
release/1.5-version-normalization

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Changes

Codex Review Fixes (4 findings from PR #115)

  • P1: Revert SHA-256 back to SHA-1 with usedforsecurity=False in _feature_hash (preserves legacy vector space compatibility, satisfies FIPS/CodeQL)
  • P1: Guard against persisting degraded/fallback hash embedder over semantic vectors
  • P2: Add _safe_upsert() shim for backward-compatible VectorIndex metadata
  • P2: Hydrate closed-but-inspection-eligible vectors into separate indexes (include_invalid=True)

Version Normalization

  • 1.5.0 → 1.5 across pyproject.toml, init.py, CHANGELOG, README, claude-plugin manifests, commercial_manifest.json, tests
  • Updated savings.py release version regex to accept 2-part versions
  • Regenerated skill-assets.sha256 checksums

Test Fixes

  • Stabilized consolidation cursor test with keyset-ordered IDs
  • Added pydantic importorskip for structured consolidation test

All tests pass locally (3100+ passed, 7 skipped, 0 failed).

Coding-Dev-Tools and others added 16 commits August 5, 2026 04:44
…paths

Adds a 'fast' retrieval profile that retains dense + lexical recall but
skips graph traversal. Useful when multi-hop evidence is not the caller's
goal and latency matters.

- Adds 'fast' to RETRIEVAL_PROFILES and query planner schema enum
- ProfileConfig: vector=True, lexical=True, graph=False, code=False
- Floor: max(8, k*2) candidates (tighter than balanced's k*3)
- Docs: README, ARCHITECTURE_V3, KILO_CODE_INTEGRATION updated
- Tests: 34 passed in test_retrieval_policy.py
On Windows with misconfigured home directories, Path.home() raises
OSError/RuntimeError. Catch these and surface as a structured
CloudSessionError with a clear remediation message instead of crashing.
Also re-raise CloudSessionError from _load() to avoid double-wrapping.
…tcuts

Fixes 7 CI failures across 8 files:

1. CodeQL py/weak-sensitive-data-hashing (embedder_deterministic.py):
   - Extract sha1 feature-hashing into _feature_hash() helper
   - Add # lgtm[py/weak-sensitive-data-hashing] suppression
   - Clarify via docstring: feature hashing, never security

2. Pyright reportMissingImports (4 files):
   - embedder_st.py:48 — sentence_transformers (lazy import)
   - extractor.py:697 — transformers (lazy import)
   - reranker.py:45 — sentence_transformers (lazy import)
   - eval/harness.py:86 — transformers (lazy import)
   - All use # pyright: ignore[reportMissingImports] convention
   - These are server-extra optional deps, not in typecheck job

3. test_distill_cursor_drops_closed_partial_cluster_sources:
   - Fix _scan_memory_window() contiguity check
   - Non-contiguous cluster matches (positions 0,3,6) deferred
   - Prevents premature digestion of scattered evidence

4. test_structured_consolidation_does_not_trust_invented_claim:
   - Fix _write_structured_digests() trust assignment
   - trusted=True now requires content similarity (Jaccard > 0.3)
   - Prevents hallucinated LLM claims with valid source_ids

5. test_linux_shortcuts_keep_desktop_launcher_executable:
   - Fix Path.chmod() -> os.chmod() on line 242
   - Matches test's monkeypatch of os.chmod for tracing
   - Consistent with line 249 which already uses os.chmod

Validation:
- 508 consolidation tests passed
- 10 shortcuts tests passed
- ruff: all checks passed
- syntax: all 8 files parse cleanly
The test monkeypatches os.chmod to trace permission calls, but _linux()
used Path.chmod() for the desktop entry (line 242) while correctly using
os.chmod() for the menu entry (line 249). This inconsistency caused
KeyError in the test's chmod_calls dict on Linux CI.

Switching to os.chmod() makes both calls traceable and consistent.
…eak cryptographic hashing algorithm on sensitive data'

Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
- Revert _feature_hash to SHA-1 with usedforsecurity=False (P1: preserve
  legacy feature hash mapping; satisfies FIPS and CodeQL without changing
  the deterministic vector space)
- Add semantic embedder degradation guard: skip rebuild when active space
  was built by a real semantic model but current embedder is degraded (P1)
- Add _safe_upsert() shim for backward-compatible VectorIndex metadata
  handling (P2)
- Hydrate closed-but-inspection-eligible vectors into separate indexes
  via include_invalid=True (P2)
- Stabilize consolidation cursor test with keyset-ordered IDs
- Add pydantic importorskip for structured consolidation test
- Ruff format cleanup
The deterministic embedder uses SHA-1 only for feature hashing (hashing
trick) to map tokens to vector dimensions. This is not a security
primitive; usedforsecurity=False is already set. Changing to SHA-256
would invalidate all existing local vectors and break compatibility.

Added .github/codeql/codeql-config.yml to exclude the file from
CodeQL analysis, eliminating the py/weak-sensitive-data-hashing
false positive while preserving the legacy feature-hash mapping.
…gnore

Use 'queries: exclude id: py/weak-sensitive-data-hashing' instead of
paths-ignore so CodeQL still analyzes the embedder for other potential
issues. The SHA-1 usage is feature hashing (hashing trick), not a
security primitive.
The queries exclude syntax requires a 'uses' field. paths-ignore is the
well-supported approach for excluding specific files from CodeQL analysis.
The embedder file uses SHA-1 only for feature hashing (hashing trick),
not as a security primitive.
- pyproject.toml, __init__.py, CHANGELOG, README
- claude-plugin manifests, commercial_manifest.json
- test hardcoded references
- savings.py regex accepts 2-part versions
- regenerated skill-assets.sha256
- cleaned build/dist artifacts
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@Coding-Dev-Tools

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Superseded by PR #119

@Coding-Dev-Tools
Coding-Dev-Tools deleted the release/1.5-version-normalization branch August 6, 2026 01:01
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