poretools: a toolkit for working with nanopore sequencing data from Oxford Nanopore.

Nick Loman and Aaron Quinlan

Complete installation instructions and usage examples can be found on the poretools documentation site.

Requirements

• HDF5 >= 1.8.7 (http://www.hdfgroup.org/HDF5/)
• Python >= 2.7
• h5py >= 2.2
• matplotlib
• seaborn
• pandas

Contributors

@arq5x @nickloman @brentp

Edit History

@carrce 2016/11/06 Edited to fix bugs related to matplotlib while executing within a docker container. @carrce 2017/06/15 Rebased to incorporate changes made to arq5x/poretools