Quick Fixes to pyproject.toml

[f-allian]

This pull request updates the pyproject.toml configuration with dependency corrections, improvements to project metadata, and enhanced testing and warning management. The most important changes are organized below:

Dependency updates:

• Corrected the numpy version requirement to >=1.26.0,<=2.2.0 to fix an invalid lower bound and ensure compatibility.

Project metadata improvements:

• Updated project URLs: changed Bug_Tracker to Issues, added Homepage, and renamed Source to Repository for clarity and completeness.

Testing and development configuration:

• Fixed formatting of the test dependencies block for consistency.
• Added filterwarnings to the pytest configuration to suppress specific deprecation and runtime warnings from dependencies, improving test output readability.
• Reformatted the python_files list in pytest options for better readability.

@jmafoster1 - Also, in relation to your PR #371, I've included a filter to supress the Jupyter warning we were getting, so feel free to not include that unnecessary chunk of code in the tests that I suggested.

[github-actions]

🦙 MegaLinter status: ✅ SUCCESS

Descriptor	Linter	Files	Fixed	Errors	Elapsed time
✅ PYTHON	black	33		0	0.99s
✅ PYTHON	pylint	33		0	5.9s

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 96.64%. Comparing base (30a4250) to head (045246d).
⚠️ Report is 3 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #372   +/-   ##
=======================================
  Coverage   96.64%   96.64%           
=======================================
  Files          28       28           
  Lines        1608     1608           
=======================================
  Hits         1554     1554           
  Misses         54       54           

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