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Sync fork 11 - #23

Merged

kkochel merged 598 commits into

mainfrom

sync-fork-11

May 10, 2026

Merged

Sync fork 11#23
kkochel merged 598 commits into
mainfrom
sync-fork-11

This pull request is big! We're only showing the most recent 250 commits

Commits on Mar 9, 2026
- Merge pull request #2303 from neicnordic/dependabot/maven/sda-doa/all-modules-833b1a4a74
  jbygdell
  authored
  e8bedf3
Commits on Mar 11, 2026
- docs(adr): add ADR-0002 merge dependabot package managers
  
  KarlG-nbis
  authored and
  kjellp
  committed
  f502cb1
- docs(adr): add ADR-0002 add mentioning of dependabot groups
  
  KarlG-nbis
  authored and
  kjellp
  committed
  6edce85
- Merge pull request #2293 from neicnordic/adr/0002-merge-dependabot-package-managers
  kjellp
  authored
  9a40003
- Merge pull request #2302 from neicnordic/dependabot/go_modules/sda-validator/orchestrator/all-modules-f80ec1a409
  jbygdell
  authored
  1001e97
Commits on Mar 12, 2026
Commits on Mar 13, 2026
Commits on Mar 19, 2026
Commits on Mar 20, 2026
Commits on Mar 23, 2026
Commits on Mar 24, 2026
- Merge pull request #2342 from neicnordic/fix/finalize_populate_backup_path_and_location
  KarlG-nbis
  authored
  89a570b
Commits on Mar 25, 2026
- Merge branch 'main' into feature/multiple-storage-backends-data-migration-documentation
  KarlG-nbis
  authored
  178b08e
- Merge pull request #2308 from neicnordic/feature/multiple-storage-backends-data-migration-documentation
  KarlG-nbis
  authored
  50f3d5d
Commits on Mar 26, 2026
Commits on Mar 27, 2026
Commits on Mar 30, 2026
- Merge pull request #2359 from neicnordic/dependabot/pip/dot-github/integration/tests/sda/auth/pip-aa7cb66ac2
  nanjiangshu
  authored
  b364933
- Merge pull request #2187 from neicnordic/feature/sda-download-v2
  jhagberg
  authored
  55ce42d
Commits on Apr 10, 2026
- build(deps): bump github.com/aws/aws-sdk-go-v2/aws/protocol/eventstream
  
  dependabot[bot]
  authored and
  jbygdell
  committed
  67f1089
- build(deps): bump github.com/go-jose/go-jose/v3 in /sda
  
  dependabot[bot]
  authored and
  jbygdell
  committed
  9a6d411
Commits on Apr 13, 2026
Commits on Apr 16, 2026
Commits on Apr 17, 2026
- build(deps): bump softprops/action-gh-release
  
  dependabot[bot]
  authored and
  nanjiangshu
  committed
  1cfe57a
Commits on Apr 20, 2026
- fix(storage-v2): do not set ContentEncoding when writing to s3, as it leads to SignatureDoesNotMatch error when talking to ceph
  KarlG-nbis
  committed
  4ae175c
Commits on Apr 23, 2026
- fix(download / storage/v2): remove SeekableMultiReader as it leaks data from reader into memory, instead update download to just discard from a io.MultiReader up until start and then continue until…
  KarlG-nbis
  committed
  9919ec8
- fix(download): dont use ArchiveReader.NewFileReadSeeker as we dont need and ReadSeeker, fix some log messages, rename adjustSeekPos -> adjustToStartPosition and make as func instead of a func variable
  KarlG-nbis
  committed
  9a26ed1
Commits on Apr 24, 2026
Commits on Apr 27, 2026
- feat(chart: rotatekey): add template files
  nanjiangshu
  committed
  6bbdb47
- feat(chart: rotatekey): update definition of variables in helpers
  nanjiangshu
  committed
  935e412
- feat(chart: rotatekey): update config in values yaml file
  nanjiangshu
  committed
  b9dd427
- feat: add smoke test for rotatekey helm chart
  nanjiangshu
  committed
  748b2cd
- feat(chart: rotatekey) bump chart version
  nanjiangshu
  committed
  ce3a4d8
- feat(chart: rotatekey): update readme
  
  nanjiangshu
  and
  Copilot
  committed
  a3f50d0
- feat(chart: rotatekey): decode rotatePubKeyData to PEM format
  nanjiangshu
  committed
  31d8117
- refactor(chart: rotatekey): sementic comments
  nanjiangshu
  committed
  6313f9a
- feat(chart: rotatekey): use base64 encoding for rotate pub key
  nanjiangshu
  committed
  e513e17
- feat(chart: rotatekey): generate secretes only when rotatekey is enabled
  nanjiangshu
  committed
  593cb89
- feat(chart: rotatekey): add tls in rotatekey-deploy
  nanjiangshu
  committed
  d06ae2f
- feat(chart: rotatekey): remove unused routingKey from secrets config
  nanjiangshu
  committed
  b906c88
- feat(chart: rotatekey): update test script
  nanjiangshu
  committed
  5840742
- feat(chart: rotatekey): append rotatekey to app label
  nanjiangshu
  committed
  884fbab
- feat(chart: rotatekey): ensure rotatekey send the message after key rotation
  nanjiangshu
  committed
  119e530
- feat(chart: rotatekey): update test script - no shared-secrets, no archive config
  nanjiangshu
  committed
  8c149fd
- feat(chart: rotatekey): remove condition 'enabled' in secrets yaml
  nanjiangshu
  committed
  7881473
- feat(rotatekey): add rotatePubKeyData in the integration test
  
  nanjiangshu
  and
  Copilot
  committed
  c64432b
- feat(chart: rotatekey): just check the archived queue
  nanjiangshu
  committed
  a5ee80e
- feat(chart: rotatekey): add ip address in certificate
  nanjiangshu
  committed
  1ac0be8
- feat(chart: rotatekey): include rotatekey in readiness check
  nanjiangshu
  committed
  4fc622b
- refactor(test): improve base64 encoding portability and correctness
  
  nanjiangshu
  and
  Copilot
  committed
  3fadfae
- fix(ci): increase timeout and use dynamic wait for readiness
  nanjiangshu
  committed
  462626a
- refactor(chart): align rotatekey TLS logic with PKI service pattern
  nanjiangshu
  committed
  375338d
- refactor(rotatekey): make component conditional and align TLS logic
  nanjiangshu
  committed
  2674ab6
- fix(ci): add key hash for the rotation key to db
  nanjiangshu
  committed
  ecf616f
- refactor(ci,test): make consistent quoting in shell script
  nanjiangshu
  committed
  27c99dc
- doc: fix formatting for sda-svc README
  nanjiangshu
  committed
  8a5c544
- chore: bump sda-svc by just one minor version
  nanjiangshu
  committed
  5421a25
Commits on Apr 28, 2026
- build(deps): bump pytest
  
  dependabot[bot]
  authored and
  jbygdell
  committed
  a8558c9
- build(deps): bump go.opentelemetry.io/otel from 1.39.0 to 1.41.0 in /sda
  
  dependabot[bot]
  authored and
  jbygdell
  committed
  7359999
- build(deps): bump aquasecurity/trivy-action in the github-actions group
  
  dependabot[bot]
  authored and
  jbygdell
  committed
  52046df
Commits on May 7, 2026
- feat(chart): add values and helpers for v2 download service
  jhagberg
  committed
  1ae59e4
- feat(chart): add v2 download service, ingress, certificate and network policy
  jhagberg
  committed
  af1aa1d
- feat(chart): add v2 download deployment and secrets templates
  jhagberg
  committed
  8bd9b91
- fix(chart): reuse shared OIDC and download DB credentials for v2
  jhagberg
  committed
  31cbc3b
- docs(chart): add @param annotations to downloadV2 values
  jhagberg
  committed
  a1f8ed0
- feat(dev-tools): add k3d smoke test for v2 download chart
  jhagberg
  committed
  8429cb0
- fix(chart): address review feedback on v2 download templates
  jhagberg
  committed
  40affae
- fix(chart): use standard HTTP port on v2 download service
  jhagberg
  committed
  ef8e183
- fix(chart): mount JWT public keys via global.oidc.jwtSecret
  jhagberg
  committed
  1850c4d
- fix(chart): address Copilot review feedback on v2 download
  jhagberg
  committed
  03636f0
- refactor(chart): use toYaml for v2 download probes
  jhagberg
  committed
  49674f8
- fix(chart): add required guards on v2 archive S3 credentials
  jhagberg
  committed
  16b42cc
- fix(chart): require hmac-secret when v2 download has >1 replica
  jhagberg
  committed
  984c995
- test(dev-tools): expand v2 smoke test with template render matrix
  jhagberg
  committed
  830af64
- test(dev-tools): add config parse checks to v2 smoke test
  jhagberg
  committed
  42a9839
- refactor(chart): use CONFIG_FILE env var for v2 download
  jhagberg
  committed
  64d366e
- refactor(chart): promote downloadV2 environment flag to global scope
  jhagberg
  committed
  292d53a
- chore(chart): bump sda-svc chart version to 3.4.0
  jhagberg
  committed
  801db56
- build(deps): bump rabbitmq in /rabbitmq
  
  dependabot[bot]
  authored and
  kostas-kou
  committed
  12d534f
- Change ssl to tls in command arguments
  
  jbygdell
  authored and
  kostas-kou
  committed
  e1000c0
- Fix rabbitmqadmin command syntax
  
  jbygdell
  authored and
  kostas-kou
  committed
  2e94857
- build(deps): bump postgres in /postgresql
  
  dependabot[bot]
  authored and
  jbygdell
  committed
  7f51ba5
- Fix test suite
  jbygdell
  committed
  de4c2b4
Commits on May 8, 2026
- build(deps): bump the go group across 3 directories with 9 updates
  
  dependabot[bot]
  authored and
  jbygdell
  committed
  dcd9723
- Merge upstream/main into sync-fork-11
  
  kkochel
  and
  claude
  committed
  a1eeb9c
Commits on May 10, 2026
- fix: use biobank registry
  kkochel
  committed
  e423d1f

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