v2.1.3

Update coraxlib

v2.0.4

This release fixes a crash in SpeciesRax

v2.0.3

Output per-species rates when --per-species-rates is enabled

v2.0.2

Fix several bugs:

• crash happening when GeneRax infers the gene trees from the sequences and then runs MiniNJ
• issue with empty lines in the mapping files
• issue with species tree infernal labels

2.0.1

Fix the --skip-family-filtering mode

v2.0.0

GeneRax2 is released, including rooted species tree inference with our new method SpeciesRax

1.2.3

Fix an issue with free rates;

GeneRax v1.2.2

Fix version number

GeneRax v1.2.1

• Do not require --reconcile to infer ML reconciliation
• Fix a major bug happening when inferring ML reconciliation without --per-family-rates

GeneRax v1.2.0

This version fixes the two following major bugs:

• random crash with parallelized runs (error message often says that a newick file is missing)
• invalid reconciliations (no transfers) with --per-family-rates option