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osint/fma: hydrate the bake from the real FMA heart subtree, not a fixture #51

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Merged
AdaWorldAPI merged 1 commit into from
Jun 24, 2026
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osint/fma: hydrate the bake from the real FMA heart subtree, not a fixture #51

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Binary file modified cockpit/public/fma.soa
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3 changes: 2 additions & 1 deletion cockpit/src/FmaGraph.tsx
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// same vis-network renderer, and on click shows a node resolving to BOTH:
// · its part-of position (basin-local: organ → chamber → wall → structure)
// · its leaf-limited global TYPE (the 0xFFFF ceiling pole — cross-cutting,
// the same "Cardiac muscle tissue" shared by every chamber).
// e.g. one "Subdivision of cavity of cardiac chamber" or "Endothelium of
// endocardium" shared by structures in different parts of the heart).
//
// This is the `Cascade` (ontology / part-of) reading of OGAR PR #116's HhtlMode
// FMA tier model: each node is a stack of 8:8 [container:identity] tiers —
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53 changes: 0 additions & 53 deletions crates/osint-bake/data/fma-heart.fixture.ttl
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166 changes: 166 additions & 0 deletions crates/osint-bake/data/fma-heart.ttl
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# fma-heart.ttl — REAL FMA heart subtree, extracted from fma.owl (FMA v5.0.0).
# Source: BioPortal #29 / UW Structural Informatics Group, CC BY 3.0,
# SHA-256 59465eb503c418dbf9216d362b94c7f42bc3b96b297e553ec17c7fee77979e44,
# mirror github.com/AdaWorldAPI/q2/releases/download/fma-ontology-5.0.0/fma.owl
# Generated by tools/extract_fma_heart.py (streaming ET; regional_part +
# constitutional_part partonomy, BFS from FMA:Heart fma7088, depth<=4, <=80 nodes).
# The 266 MB OWL is NOT committed; the production hydrator is the spine's
# lance_graph_ontology::hydrate_fma. This is the real-data heart slice the
# q2 /fma render surface hydrates.

fma:Cavity_of_right_atrium bfo:part_of fma:Heart .
fma:Cardiac_vein bfo:part_of fma:Heart .
fma:Neural_network_of_heart bfo:part_of fma:Heart .
fma:Coronary_sinus bfo:part_of fma:Heart .
fma:Right_coronary_artery bfo:part_of fma:Heart .
fma:Left_coronary_artery bfo:part_of fma:Heart .
fma:Interatrial_septum bfo:part_of fma:Heart .
fma:Interventricular_septum bfo:part_of fma:Heart .
fma:Atrioventricular_septum bfo:part_of fma:Heart .
fma:Right_side_of_heart bfo:part_of fma:Heart .
fma:Left_side_of_heart bfo:part_of fma:Heart .
fma:Tricuspid_valve bfo:part_of fma:Heart .
fma:Mitral_valve bfo:part_of fma:Heart .
fma:Aortic_valve bfo:part_of fma:Heart .
fma:Pulmonary_valve bfo:part_of fma:Heart .
fma:Wall_of_heart bfo:part_of fma:Heart .
fma:Systemic_capillary_bed_of_heart bfo:part_of fma:Heart .
fma:Lymphatic_capillary_bed_of_heart bfo:part_of fma:Heart .
fma:Cavity_of_right_ventricle bfo:part_of fma:Heart .
fma:Cavity_of_left_atrium bfo:part_of fma:Heart .
fma:Cavity_of_left_ventricle bfo:part_of fma:Heart .
fma:Fibrous_skeleton_of_heart bfo:part_of fma:Heart .
fma:Cavity_of_inflow_part_of_right_atrium bfo:part_of fma:Cavity_of_right_atrium .
fma:Ostium_of_superior_vena_cava bfo:part_of fma:Cavity_of_right_atrium .
fma:Ostium_of_inferior_vena_cava bfo:part_of fma:Cavity_of_right_atrium .
fma:Variant_branch_of_right_coronary_arterial_tree bfo:part_of fma:Right_coronary_artery .
fma:Recurrent_atrioventricular_branch_of_right_coronary_artery bfo:part_of fma:Right_coronary_artery .
fma:Lateral_atrial_branch_of_right_coronary_artery bfo:part_of fma:Right_coronary_artery .
fma:Wall_of_left_coronary_artery bfo:part_of fma:Left_coronary_artery .
fma:Lumen_of_left_coronary_artery bfo:part_of fma:Left_coronary_artery .
fma:Trunk_of_left_coronary_artery bfo:part_of fma:Left_coronary_artery .
fma:Membranous_part_of_interatrial_septum bfo:part_of fma:Interatrial_septum .
fma:Fibrocollagenous_connective_tissue_of_interatrial_septum bfo:part_of fma:Interatrial_septum .
fma:Muscular_part_of_interatrial_septum bfo:part_of fma:Interatrial_septum .
fma:Fibrocollagenous_connective_tissue_of_interventricular_septum bfo:part_of fma:Interventricular_septum .
fma:Muscular_part_of_interventricular_septum bfo:part_of fma:Interventricular_septum .
fma:Membranous_part_of_interventricular_septum bfo:part_of fma:Interventricular_septum .
fma:Endothelium_of_atrioventricular_septum bfo:part_of fma:Atrioventricular_septum .
fma:Fibroelastic_connective_tissue_of_endocardium bfo:part_of fma:Atrioventricular_septum .
fma:Neural_network_of_right_side_of_heart bfo:part_of fma:Right_side_of_heart .
fma:Small_cardiac_vein bfo:part_of fma:Right_side_of_heart .
fma:Right_marginal_vein bfo:part_of fma:Right_side_of_heart .
fma:Neural_network_of_left_side_of_heart bfo:part_of fma:Left_side_of_heart .
fma:Great_cardiac_vein bfo:part_of fma:Left_side_of_heart .
fma:Left_atrium bfo:part_of fma:Left_side_of_heart .
fma:Endothelium_of_tricuspid_valve bfo:part_of fma:Tricuspid_valve .
fma:Anterior_leaflet_of_tricuspid_valve bfo:part_of fma:Tricuspid_valve .
fma:Posterior_leaflet_of_tricuspid_valve bfo:part_of fma:Tricuspid_valve .
fma:Endothelium_of_mitral_valve bfo:part_of fma:Mitral_valve .
fma:Anterior_leaflet_of_mitral_valve bfo:part_of fma:Mitral_valve .
fma:Posterior_leaflet_of_mitral_valve bfo:part_of fma:Mitral_valve .
fma:Endothelium_of_aortic_valve bfo:part_of fma:Aortic_valve .
fma:Right_posterior_cusp_of_aortic_valve bfo:part_of fma:Aortic_valve .
fma:Anterior_cusp_of_aortic_valve bfo:part_of fma:Aortic_valve .
fma:Left_anterior_cusp_of_pulmonary_valve bfo:part_of fma:Pulmonary_valve .
fma:Right_anterior_cusp_of_pulmonary_valve bfo:part_of fma:Pulmonary_valve .
fma:Posterior_cusp_of_pulmonary_valve bfo:part_of fma:Pulmonary_valve .
fma:Endocardium bfo:part_of fma:Wall_of_heart .
fma:Epicardium bfo:part_of fma:Wall_of_heart .
fma:Myocardium bfo:part_of fma:Wall_of_heart .
fma:Ostium_of_least_cardiac_vein_of_right_ventricle bfo:part_of fma:Cavity_of_right_ventricle .
fma:Cavity_of_inflow_part_of_right_ventricle bfo:part_of fma:Cavity_of_right_ventricle .
fma:Ostium_of_pulmonary_trunk bfo:part_of fma:Cavity_of_right_ventricle .
fma:Cavity_of_inflow_part_of_left_atrium bfo:part_of fma:Cavity_of_left_atrium .
fma:Cavity_proper_of_left_atrium bfo:part_of fma:Cavity_of_left_atrium .
fma:Ostium_of_right_superior_pulmonary_vein bfo:part_of fma:Cavity_of_left_atrium .
fma:Cavity_of_inflow_part_of_left_ventricle bfo:part_of fma:Cavity_of_left_ventricle .
fma:Ostium_of_aorta bfo:part_of fma:Cavity_of_left_ventricle .
fma:Cavity_of_outflow_part_of_left_ventricle bfo:part_of fma:Cavity_of_left_ventricle .
fma:Connective_tissue_of_fibrous_skeleton_of_heart bfo:part_of fma:Fibrous_skeleton_of_heart .
fma:Fibrocollagenous_connective_tissue_of_fibrous_skeleton_of_heart bfo:part_of fma:Fibrous_skeleton_of_heart .
fma:Central_fibrous_body bfo:part_of fma:Fibrous_skeleton_of_heart .
fma:Cavity_proper_of_inflow_part_of_right_atrium bfo:part_of fma:Cavity_of_inflow_part_of_right_atrium .
fma:Ostium_of_coronary_sinus bfo:part_of fma:Cavity_of_inflow_part_of_right_atrium .
fma:Ostium_of_least_cardiac_vein_of_right_atrium bfo:part_of fma:Cavity_of_inflow_part_of_right_atrium .
fma:Lumen_of_trunk_of_left_coronary_artery bfo:part_of fma:Trunk_of_left_coronary_artery .
fma:Wall_of_trunk_of_left_coronary_artery bfo:part_of fma:Trunk_of_left_coronary_artery .
fma:Endocardium_of_interatrial_septum bfo:part_of fma:Membranous_part_of_interatrial_septum .
fma:Fibrocollagenous_connective_tissue_of_muscular_part_of_interatrial_septum bfo:part_of fma:Muscular_part_of_interatrial_septum .
fma:Heart rdfs:subClassOf fma:Organ_with_cavitated_organ_parts .
fma:Cavity_of_right_atrium rdfs:subClassOf fma:Cavity_of_atrium .
fma:Cardiac_vein rdfs:subClassOf fma:Systemic_vein .
fma:Neural_network_of_heart rdfs:subClassOf fma:Neural_network_of_organ .
fma:Coronary_sinus rdfs:subClassOf fma:Trunk_of_systemic_vein .
fma:Right_coronary_artery rdfs:subClassOf fma:Coronary_artery .
fma:Left_coronary_artery rdfs:subClassOf fma:Coronary_artery .
fma:Interatrial_septum rdfs:subClassOf fma:Cardiac_septum .
fma:Interventricular_septum rdfs:subClassOf fma:Cardiac_septum .
fma:Atrioventricular_septum rdfs:subClassOf fma:Region_of_membranous_part_of_interventricular_septum .
fma:Right_side_of_heart rdfs:subClassOf fma:Zone_of_heart .
fma:Left_side_of_heart rdfs:subClassOf fma:Zone_of_heart .
fma:Tricuspid_valve rdfs:subClassOf fma:Atrioventricular_valve .
fma:Mitral_valve rdfs:subClassOf fma:Atrioventricular_valve .
fma:Aortic_valve rdfs:subClassOf fma:Cardiac_valve .
fma:Pulmonary_valve rdfs:subClassOf fma:Cardiac_valve .
fma:Wall_of_heart rdfs:subClassOf fma:Wall_of_organ .
fma:Systemic_capillary_bed_of_heart rdfs:subClassOf fma:Systemic_capillary_bed .
fma:Lymphatic_capillary_bed_of_heart rdfs:subClassOf fma:Lymphatic_capillary_bed .
fma:Cavity_of_right_ventricle rdfs:subClassOf fma:Cavity_of_ventricle .
fma:Cavity_of_left_atrium rdfs:subClassOf fma:Cavity_of_atrium .
fma:Cavity_of_left_ventricle rdfs:subClassOf fma:Cavity_of_ventricle .
fma:Fibrous_skeleton_of_heart rdfs:subClassOf fma:Fibrous_connective_tissue .
fma:Cavity_of_inflow_part_of_right_atrium rdfs:subClassOf fma:Subdivision_of_cavity_of_cardiac_chamber .
fma:Ostium_of_superior_vena_cava rdfs:subClassOf fma:Orifice_of_vein .
fma:Ostium_of_inferior_vena_cava rdfs:subClassOf fma:Orifice_of_vein .
fma:Variant_branch_of_right_coronary_arterial_tree rdfs:subClassOf fma:Branch_of_right_coronary_artery .
fma:Recurrent_atrioventricular_branch_of_right_coronary_artery rdfs:subClassOf fma:Branch_of_right_coronary_artery .
fma:Lateral_atrial_branch_of_right_coronary_artery rdfs:subClassOf fma:Atrial_branch_of_right_coronary_artery .
fma:Wall_of_left_coronary_artery rdfs:subClassOf fma:Wall_of_coronary_artery .
fma:Lumen_of_left_coronary_artery rdfs:subClassOf fma:Lumen_of_coronary_artery .
fma:Trunk_of_left_coronary_artery rdfs:subClassOf fma:Trunk_of_coronary_artery .
fma:Membranous_part_of_interatrial_septum rdfs:subClassOf fma:Membranous_part_of_cardiac_septum .
fma:Fibrocollagenous_connective_tissue_of_interatrial_septum rdfs:subClassOf fma:Fibrocollagenous_sheath_of_cardiac_muscle_tissue .
fma:Muscular_part_of_interatrial_septum rdfs:subClassOf fma:Muscular_part_of_cardiac_septum .
fma:Fibrocollagenous_connective_tissue_of_interventricular_septum rdfs:subClassOf fma:Fibrocollagenous_sheath_of_cardiac_muscle_tissue .
fma:Muscular_part_of_interventricular_septum rdfs:subClassOf fma:Muscular_part_of_cardiac_septum .
fma:Membranous_part_of_interventricular_septum rdfs:subClassOf fma:Membranous_part_of_cardiac_septum .
fma:Endothelium_of_atrioventricular_septum rdfs:subClassOf fma:Endothelium_of_endocardium .
fma:Fibroelastic_connective_tissue_of_endocardium rdfs:subClassOf fma:Fibroelastic_connective_tissue .
fma:Neural_network_of_right_side_of_heart rdfs:subClassOf fma:Neural_network_of_organ_part .
fma:Neural_network_of_left_side_of_heart rdfs:subClassOf fma:Neural_network_of_organ_part .
fma:Left_atrium rdfs:subClassOf fma:Cardiac_atrium .
fma:Endothelium_of_tricuspid_valve rdfs:subClassOf fma:Endothelium_of_endocardium .
fma:Anterior_leaflet_of_tricuspid_valve rdfs:subClassOf fma:Leaflet_of_tricuspid_valve .
fma:Posterior_leaflet_of_tricuspid_valve rdfs:subClassOf fma:Leaflet_of_tricuspid_valve .
fma:Endothelium_of_mitral_valve rdfs:subClassOf fma:Endothelium_of_endocardium .
fma:Anterior_leaflet_of_mitral_valve rdfs:subClassOf fma:Leaflet_of_mitral_valve .
fma:Posterior_leaflet_of_mitral_valve rdfs:subClassOf fma:Leaflet_of_mitral_valve .
fma:Endothelium_of_aortic_valve rdfs:subClassOf fma:Endothelium_of_endocardium .
fma:Right_posterior_cusp_of_aortic_valve rdfs:subClassOf fma:Cusp_of_aortic_valve .
fma:Anterior_cusp_of_aortic_valve rdfs:subClassOf fma:Cusp_of_aortic_valve .
fma:Left_anterior_cusp_of_pulmonary_valve rdfs:subClassOf fma:Cusp_of_pulmonary_valve .
fma:Right_anterior_cusp_of_pulmonary_valve rdfs:subClassOf fma:Cusp_of_pulmonary_valve .
fma:Posterior_cusp_of_pulmonary_valve rdfs:subClassOf fma:Cusp_of_pulmonary_valve .
fma:Endocardium rdfs:subClassOf fma:Tunica_intima .
fma:Epicardium rdfs:subClassOf fma:Region_of_visceral_serous_pericardium .
fma:Myocardium rdfs:subClassOf fma:Muscle_body .
fma:Ostium_of_least_cardiac_vein_of_right_ventricle rdfs:subClassOf fma:Ostium_of_least_cardiac_vein .
fma:Cavity_of_inflow_part_of_right_ventricle rdfs:subClassOf fma:Subdivision_of_cavity_of_cardiac_chamber .
fma:Ostium_of_pulmonary_trunk rdfs:subClassOf fma:Orifice_of_artery .
fma:Cavity_of_inflow_part_of_left_atrium rdfs:subClassOf fma:Subdivision_of_cavity_of_cardiac_chamber .
fma:Cavity_proper_of_left_atrium rdfs:subClassOf fma:Subdivision_of_cavity_of_cardiac_chamber .
fma:Ostium_of_right_superior_pulmonary_vein rdfs:subClassOf fma:Ostium_of_superior_pulmonary_vein .
fma:Cavity_of_inflow_part_of_left_ventricle rdfs:subClassOf fma:Subdivision_of_cavity_of_cardiac_chamber .
fma:Ostium_of_aorta rdfs:subClassOf fma:Orifice_of_artery .
fma:Cavity_of_outflow_part_of_left_ventricle rdfs:subClassOf fma:Subdivision_of_cavity_of_cardiac_chamber .
fma:Connective_tissue_of_fibrous_skeleton_of_heart rdfs:subClassOf fma:Fibroelastic_connective_tissue .
fma:Fibrocollagenous_connective_tissue_of_fibrous_skeleton_of_heart rdfs:subClassOf fma:Fibrocollagenous_connective_tissue .
fma:Central_fibrous_body rdfs:subClassOf fma:Subdivision_of_fibrous_skeleton_of_heart .
fma:Cavity_proper_of_inflow_part_of_right_atrium rdfs:subClassOf fma:Subdivision_of_cavity_of_cardiac_chamber .
fma:Ostium_of_coronary_sinus rdfs:subClassOf fma:Orifice_of_vein .
fma:Ostium_of_least_cardiac_vein_of_right_atrium rdfs:subClassOf fma:Ostium_of_least_cardiac_vein .
fma:Lumen_of_trunk_of_left_coronary_artery rdfs:subClassOf fma:Lumen_of_trunk_of_coronary_artery .
fma:Wall_of_trunk_of_left_coronary_artery rdfs:subClassOf fma:Wall_of_trunk_of_coronary_artery .
fma:Endocardium_of_interatrial_septum rdfs:subClassOf fma:Endocardium_of_cardiac_septum .
fma:Fibrocollagenous_connective_tissue_of_muscular_part_of_interatrial_septum rdfs:subClassOf fma:Fibrocollagenous_sheath_of_cardiac_muscle_tissue .
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