workflow-pathoscope/pyproject.toml at main · virtool/workflow-pathoscope · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
[project]
name = "workflow-pathoscope"
version = "0.1.0"
description = "A workflow for detecting known viruses in Virtool"
readme = "README.md"
requires-python = ">=3.13.7,<3.14"
license = "MIT"
dependencies = [
    "virtool",
]
authors = [
    {name="Ian Boyes"},
    {name="Blake Smith"},
    {name="Mallory Loria"},
    {name="Lilly Roberts"},
    {name="Markus Swoveland"},
]

[dependency-groups]
dev = [
    "maturin[patchelf]>=1.9.2",
    "pysam>=0.22.0",
    "pytest>=8.4.1,<10.0.0",
    "pytest-asyncio<=1.3.0,<2.0.0",
    "pytest-mock<=3.15.1,<4.0.0",
    "pytest-structlog>=1.1",
    "ruff>=0.12.7",
    "syrupy>=4.9.1",
]

[tool.maturin]
python-source = "python"
module-name = "workflow_pathoscope.rust"
features = ["pyo3/extension-module"]

[tool.pytest.ini_options]
asyncio_mode = "auto"

[tool.uv.sources]
virtool = { git = "https://github.com/virtool/virtool", tag = "31.11.3" }

[build-system]
requires = ["maturin>=1.13.1,<2.0"]
build-backend = "maturin"