CHECKLIST.md

Implementation Checklist

Documentation Review

1. Project Overview

• Read README.md for project overview
• Review project_analysis.md for architecture
• Check codebase_status.md for current state
• Review findings_summary.md for key issues

2. Planning Documents

• Review data_source_plan.md for data integration
• Check web_enrichment_plan.md for web features
• Review ml_enhancement_plan.md for ML improvements
• Check web_interface_plan.md for UI updates
• Review project_roadmap.md for timeline

3. Implementation Guides

• Study implementation_files.md for file structure
• Review action_plan.md for detailed steps
• Check IMMEDIATE_STEPS.md for day-by-day guide
• Review SUMMARY.md for overall context

Development Setup

1. Environment

• Clone repository
• Create virtual environment
• Install dependencies
• Install special dependencies
• Set up pre-commit hooks

2. Tools

• Configure Git
• Set up pytest
• Configure mypy
• Set up black formatter
• Configure isort

3. External Services

• Get ChEMBL API access
• Set up PubChem access
• Configure Reddit API
• Set up Twitter API

Implementation Preparation

1. Model Consolidation

• Create backup branches
• Review current models
• Plan model hierarchy
• Prepare test strategy

2. Infrastructure

• Review caching needs
• Plan monitoring system
• Design validation rules
• Prepare error handling

3. Testing

• Review existing tests
• Plan new test cases
• Set up test fixtures
• Configure coverage

First Steps

1. Day 1

• Create backup branches
• Review current models
• Start model migration
• Run initial tests

2. Day 2-3

• Move compound models
• Update imports
• Fix circular imports
• Run tests

3. Day 4

• Review psychopharm code
• Plan integration
• Start migration
• Update tests

4. Day 5

• Run full test suite
• Fix any issues
• Update documentation
• Review changes

Support Resources

1. Documentation

• API reference in docs/source/api_reference/
• User guides in docs/source/user_guide/
• Examples in docs/source/examples/
• Best practices in docs/source/best_practices.rst

2. Development Tools

• Git repository access
• Issue tracker access
• CI/CD pipeline access
• Code review system

3. External Resources

• API documentation
• Library documentation
• Community forums
• Support channels

Quality Assurance

1. Code Quality

• Run linters
• Check type hints
• Run security checks
• Review documentation

2. Testing

• Run unit tests
• Run integration tests
• Check coverage
• Review test results

3. Documentation

• Check docstrings
• Review API docs
• Update examples
• Review guides

Next Steps

1. After Setup

• Start with model consolidation
• Follow IMMEDIATE_STEPS.md
• Run tests frequently
• Update documentation

2. Getting Help

• Review documentation first
• Check existing issues
• Use discussions
• Contact maintainers

3. Contributing

• Read CONTRIBUTING.md
• Follow standards
• Add tests
• Update docs