From 584ddeb1f633e7a49e498c71ee2e553dc45dece7 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sat, 29 Aug 2026 22:24:10 +0300 Subject: [PATCH 01/56] feat(client): track the 0.5.1 proto and drop the stand-in messages Both submodules move to the v0.5.1 release: proto to the tree the server ships, coordinode-rs to the release commit. The client was pinned against 0.4-era definitions, where a good deal of the surface did not work yet. The schema wrappers follow the server rename: the field identifies a DDL snapshot, not a version of anything. schema_mode goes from EdgeTypeInfo because EdgeType has no such field and never did, so the attribute could only ever read back zero. New in this proto and now exposed: element_id on nodes and edges, the canonical opaque identifier that application code should prefer over the raw 64-bit id, which stays for Neo4j v4 driver compatibility. The tests built their own objects that claimed to match the proto shape but were never checked against it, which is exactly why the rename passed a green suite. They now construct the generated messages, so a field that moves fails here. That immediately surfaced a second bug the stand-ins hid: score is a 32-bit float on the wire, and an equality assertion against 0.95 only held because the stand-in stored a Python float. Proto generation needed a fix too. The submodule vendors its own google/protobuf/descriptor.proto so the Rust build works without protobuf-devel; that copy is older than this protoc and, once it won the include search, generation died on a malformed descriptor. grpc_tools' own well-known types now come first. BREAKING CHANGE: LabelInfo.version and EdgeTypeInfo.version are now schema_revision, and EdgeTypeInfo.schema_mode is removed. --- Makefile | 12 +- coordinode-rs | 2 +- coordinode/coordinode/client.py | 29 ++++- proto | 2 +- tests/unit/test_langchain_graph.py | 39 +++--- tests/unit/test_schema_crud.py | 200 +++++++++++++---------------- tests/unit/test_types.py | 99 ++------------ 7 files changed, 163 insertions(+), 220 deletions(-) diff --git a/Makefile b/Makefile index edf4ece..a261c05 100644 --- a/Makefile +++ b/Makefile @@ -4,16 +4,26 @@ PROTO_SRC := proto PROTO_OUT := coordinode/coordinode/_proto PYTHON ?= python3 +# Well-known types that ship with grpc_tools. The proto submodule vendors its +# own google/protobuf/descriptor.proto so the Rust build works on hosts without +# protobuf-devel; that copy is older than what this protoc expects and, if it +# wins the include search, generation dies with "Malformed descriptor.proto +# doesn't contain google.protobuf.FeatureSet". Searching here first keeps +# descriptor.proto on protoc's own copy while google/api/* still resolves from +# the submodule, which is the only place it exists. +GRPC_INC := $(shell $(PYTHON) -c "import grpc_tools, os; print(os.path.join(os.path.dirname(grpc_tools.__file__), '_proto'))") + # Generate gRPC stubs from proto submodule into coordinode/_proto/ proto: @echo "==> Generating proto stubs..." @mkdir -p $(PROTO_OUT) $(PYTHON) -m grpc_tools.protoc \ + -I$(GRPC_INC) \ -I$(PROTO_SRC) \ --python_out=$(PROTO_OUT) \ --grpc_python_out=$(PROTO_OUT) \ --pyi_out=$(PROTO_OUT) \ - $$(find $(PROTO_SRC) -name '*.proto') + $$(find $(PROTO_SRC) -name '*.proto' -not -path '$(PROTO_SRC)/google/protobuf/*') @# Add __init__.py to every generated package directory @find $(PROTO_OUT) -type d -exec touch {}/__init__.py \; @# Fix absolute imports in all generated pb2 files (grpc_tools generates absolute paths) diff --git a/coordinode-rs b/coordinode-rs index 8d4037c..be08af3 160000 --- a/coordinode-rs +++ b/coordinode-rs @@ -1 +1 @@ -Subproject commit 8d4037c7564ffe787d763eabfadb1c1ed3da7a6b +Subproject commit be08af3e62cb77415c49c7cc6b3c843d52e7faa6 diff --git a/coordinode/coordinode/client.py b/coordinode/coordinode/client.py index f65d598..47de411 100644 --- a/coordinode/coordinode/client.py +++ b/coordinode/coordinode/client.py @@ -68,11 +68,15 @@ class NodeResult: def __init__(self, proto_node: Any) -> None: self.id: int = proto_node.node_id + #: Canonical opaque identifier, stable across schema changes, restarts + #: and replication. Prefer this over :attr:`id` when referring to a node + #: from application code; `id` stays for Neo4j v4 driver compatibility. + self.element_id: str = proto_node.element_id self.labels: list[str] = list(proto_node.labels) self.properties: dict[str, PyValue] = props_to_dict(proto_node.properties) def __repr__(self) -> str: - return f"Node(id={self.id}, labels={self.labels}, properties={self.properties})" + return f"Node(id={self.id}, element_id={self.element_id!r}, labels={self.labels}, properties={self.properties})" class EdgeResult: @@ -83,6 +87,10 @@ def __init__(self, proto_edge: Any) -> None: self.type: str = proto_edge.edge_type self.source_id: int = proto_edge.source_node_id self.target_id: int = proto_edge.target_node_id + #: Endpoint identifier, the source and target element ids in canonical + #: order. Edges here are typed property bags between two nodes rather + #: than first-class entities, so this is not a stable handle to one edge. + self.element_id: str = proto_edge.element_id self.properties: dict[str, PyValue] = props_to_dict(proto_edge.properties) def __repr__(self) -> str: @@ -131,13 +139,17 @@ class LabelInfo: def __init__(self, proto_label: Any) -> None: self.name: str = proto_label.name - self.version: int = proto_label.version + #: DDL snapshot identity, bumped by every schema change to this label. + self.schema_revision: int = proto_label.schema_revision self.properties: list[PropertyDefinitionInfo] = [PropertyDefinitionInfo(p) for p in proto_label.properties] # schema_mode: 0=unspecified, 1=strict, 2=validated, 3=flexible - self.schema_mode: int = getattr(proto_label, "schema_mode", 0) + self.schema_mode: int = proto_label.schema_mode def __repr__(self) -> str: - return f"LabelInfo(name={self.name!r}, version={self.version}, properties={len(self.properties)}, schema_mode={self.schema_mode})" + return ( + f"LabelInfo(name={self.name!r}, schema_revision={self.schema_revision}, " + f"properties={len(self.properties)}, schema_mode={self.schema_mode})" + ) class EdgeTypeInfo: @@ -145,12 +157,15 @@ class EdgeTypeInfo: def __init__(self, proto_edge_type: Any) -> None: self.name: str = proto_edge_type.name - self.version: int = proto_edge_type.version + #: DDL snapshot identity, bumped by every schema change to this edge type. + self.schema_revision: int = proto_edge_type.schema_revision self.properties: list[PropertyDefinitionInfo] = [PropertyDefinitionInfo(p) for p in proto_edge_type.properties] - self.schema_mode: int = getattr(proto_edge_type, "schema_mode", 0) def __repr__(self) -> str: - return f"EdgeTypeInfo(name={self.name!r}, version={self.version}, properties={len(self.properties)}, schema_mode={self.schema_mode})" + return ( + f"EdgeTypeInfo(name={self.name!r}, schema_revision={self.schema_revision}, " + f"properties={len(self.properties)})" + ) class TraverseResult: diff --git a/proto b/proto index eb472a4..10186f7 160000 --- a/proto +++ b/proto @@ -1 +1 @@ -Subproject commit eb472a4c6a6069ee4167061442402ceffe42e0cc +Subproject commit 10186f78fae9fbe46bf03f638ce14e5ff4245bce diff --git a/tests/unit/test_langchain_graph.py b/tests/unit/test_langchain_graph.py index 22b6dad..7dcc101 100644 --- a/tests/unit/test_langchain_graph.py +++ b/tests/unit/test_langchain_graph.py @@ -1,30 +1,32 @@ """Unit tests for CoordinodeGraph (langchain-coordinode). -All tests use mock clients — no proto stubs or running server required. +The client is a stand-in, but the results it hands back are real TextResult +objects built from generated proto messages, so wire-level types (a 32-bit +score, for one) behave here as they do against a live server. """ from __future__ import annotations from typing import Any -from langchain_coordinode import CoordinodeGraph +import pytest -# ── Fake client helpers ─────────────────────────────────────────────────────── +from coordinode._proto.coordinode.v1.query import text_pb2 +from coordinode.client import TextResult +from langchain_coordinode import CoordinodeGraph +# ── Client stand-ins ─────────────────────────────────────────────────────── -class _FakeTextResult: - """Matches coordinode.client.TextResult shape.""" - def __init__(self, node_id: int, score: float, snippet: str = "") -> None: - self.node_id = node_id - self.score = score - self.snippet = snippet +def _text_result(node_id: int, score: float, snippet: str = "") -> TextResult: + """Build a real TextResult from the generated proto message.""" + return TextResult(text_pb2.TextResult(node_id=node_id, score=score, snippet=snippet)) class _ClientWithTextSearch: """Minimal fake client that implements text_search().""" - def __init__(self, results: list[_FakeTextResult]) -> None: + def __init__(self, results: list[TextResult]) -> None: self._results = results self.last_call: dict[str, Any] = {} @@ -39,7 +41,7 @@ def text_search( limit: int = 10, fuzzy: bool = False, language: str = "", - ) -> list[_FakeTextResult]: + ) -> list[TextResult]: self.last_call = { "label": label, "query": query, @@ -86,8 +88,8 @@ class TestKeywordSearch: def test_returns_list_of_dicts(self) -> None: """keyword_search returns list[dict] with id/score/snippet keys.""" results = [ - _FakeTextResult(node_id=1, score=0.95, snippet="machine learning"), - _FakeTextResult(node_id=2, score=0.72, snippet=""), + _text_result(node_id=1, score=0.95, snippet="machine learning"), + _text_result(node_id=2, score=0.72, snippet=""), ] client = _ClientWithTextSearch(results) graph = CoordinodeGraph(client=client) @@ -95,8 +97,13 @@ def test_returns_list_of_dicts(self) -> None: out = graph.keyword_search("machine learning", k=5, label="Article") assert len(out) == 2 - assert out[0] == {"id": 1, "score": 0.95, "snippet": "machine learning"} - assert out[1] == {"id": 2, "score": 0.72, "snippet": ""} + # `score` is a 32-bit float on the wire, so compare it approximately. + assert out[0]["id"] == 1 + assert out[0]["score"] == pytest.approx(0.95) + assert out[0]["snippet"] == "machine learning" + assert out[1]["id"] == 2 + assert out[1]["score"] == pytest.approx(0.72) + assert out[1]["snippet"] == "" def test_passes_params_to_client(self) -> None: """keyword_search forwards label, query, k, fuzzy, language to client.text_search.""" @@ -157,7 +164,7 @@ def test_returns_empty_list_when_no_results(self) -> None: def test_empty_snippet_preserved(self) -> None: """snippet key is always present even when the server returns empty string.""" - results = [_FakeTextResult(node_id=42, score=0.5)] # snippet defaults to "" + results = [_text_result(node_id=42, score=0.5)] # snippet defaults to "" client = _ClientWithTextSearch(results) graph = CoordinodeGraph(client=client) diff --git a/tests/unit/test_schema_crud.py b/tests/unit/test_schema_crud.py index 67db15c..6cdab42 100644 --- a/tests/unit/test_schema_crud.py +++ b/tests/unit/test_schema_crud.py @@ -1,14 +1,15 @@ -"""Unit tests for R-SDK3 additions: LabelInfo, EdgeTypeInfo, TraverseResult. +"""Unit tests for the schema and traversal result wrappers. -All tests are mock-based — no proto stubs or running server required. -Pattern mirrors test_types.py: fake proto objects with the same attribute -interface that real generated messages provide. +These build the real generated proto messages rather than stand-ins, so a +field rename or removal in the proto submodule fails here instead of reaching +users as an AttributeError at runtime. """ import asyncio import pytest +from coordinode._proto.coordinode.v1.graph import graph_pb2, schema_pb2 from coordinode.client import ( AsyncCoordinodeClient, EdgeResult, @@ -19,65 +20,48 @@ TraverseResult, ) -# ── Fake proto stubs ───────────────────────────────────────────────────────── +# ── Real proto message builders ────────────────────────────────────────────── -class _FakePropDef: - """Matches proto PropertyDefinition shape.""" +def _prop_def(name: str, type_: int, required: bool = False, unique: bool = False): + return schema_pb2.PropertyDefinition(name=name, type=type_, required=required, unique=unique) - def __init__(self, name: str, type_: int, required: bool = False, unique: bool = False) -> None: - self.name = name - self.type = type_ - self.required = required - self.unique = unique +def _label(name: str, schema_revision: int = 1, properties=None, schema_mode: int = 0): + return schema_pb2.Label( + name=name, + schema_revision=schema_revision, + properties=properties or [], + schema_mode=schema_mode, + ) -class _FakeLabel: - """Matches proto Label shape.""" - def __init__(self, name: str, version: int = 1, properties=None, schema_mode: int = 0) -> None: - self.name = name - self.version = version - self.properties = properties or [] - self.schema_mode = schema_mode +def _edge_type(name: str, schema_revision: int = 1, properties=None): + return schema_pb2.EdgeType(name=name, schema_revision=schema_revision, properties=properties or []) -class _FakeEdgeType: - """Matches proto EdgeType shape.""" +def _node(node_id: int, labels=None, properties=None, element_id: str = ""): + return graph_pb2.Node( + node_id=node_id, + labels=labels or [], + properties=properties or {}, + element_id=element_id, + ) - def __init__(self, name: str, version: int = 1, properties=None, schema_mode: int = 0) -> None: - self.name = name - self.version = version - self.properties = properties or [] - self.schema_mode = schema_mode +def _edge(edge_id: int, edge_type: str, source: int, target: int, properties=None, element_id: str = ""): + return graph_pb2.Edge( + edge_id=edge_id, + edge_type=edge_type, + source_node_id=source, + target_node_id=target, + properties=properties or {}, + element_id=element_id, + ) -class _FakeNode: - """Matches proto Node shape.""" - def __init__(self, node_id: int, labels=None, properties=None) -> None: - self.node_id = node_id - self.labels = labels or [] - self.properties = properties or {} - - -class _FakeEdge: - """Matches proto Edge shape.""" - - def __init__(self, edge_id: int, edge_type: str, source: int, target: int, properties=None) -> None: - self.edge_id = edge_id - self.edge_type = edge_type - self.source_node_id = source - self.target_node_id = target - self.properties = properties or {} - - -class _FakeTraverseResponse: - """Matches proto TraverseResponse shape.""" - - def __init__(self, nodes=None, edges=None) -> None: - self.nodes = nodes or [] - self.edges = edges or [] +def _traverse_response(nodes=None, edges=None): + return graph_pb2.TraverseResponse(nodes=nodes or [], edges=edges or []) # ── PropertyDefinitionInfo ─────────────────────────────────────────────────── @@ -86,18 +70,18 @@ def __init__(self, nodes=None, edges=None) -> None: class TestPropertyDefinitionInfo: def test_fields_are_mapped(self): # type=3 = PROPERTY_TYPE_STRING (int value from proto enum) - p = PropertyDefinitionInfo(_FakePropDef("name", 3, required=True, unique=False)) + p = PropertyDefinitionInfo(_prop_def("name", 3, required=True, unique=False)) assert p.name == "name" assert p.type == 3 assert p.required is True assert p.unique is False def test_repr_contains_name(self): - p = PropertyDefinitionInfo(_FakePropDef("age", 1)) + p = PropertyDefinitionInfo(_prop_def("age", 1)) assert "age" in repr(p) def test_optional_flags_default_false(self): - p = PropertyDefinitionInfo(_FakePropDef("x", 2)) + p = PropertyDefinitionInfo(_prop_def("x", 2)) assert p.required is False assert p.unique is False @@ -107,58 +91,48 @@ def test_optional_flags_default_false(self): class TestLabelInfo: def test_empty_properties(self): - label = LabelInfo(_FakeLabel("Person", version=2)) + label = LabelInfo(_label("Person", schema_revision=2)) assert label.name == "Person" - assert label.version == 2 + assert label.schema_revision == 2 assert label.properties == [] def test_properties_are_wrapped(self): - props = [_FakePropDef("name", 3), _FakePropDef("age", 1)] - label = LabelInfo(_FakeLabel("User", properties=props)) + props = [_prop_def("name", 3), _prop_def("age", 1)] + label = LabelInfo(_label("User", properties=props)) assert len(label.properties) == 2 assert all(isinstance(p, PropertyDefinitionInfo) for p in label.properties) assert label.properties[0].name == "name" assert label.properties[1].name == "age" def test_repr_contains_name(self): - label = LabelInfo(_FakeLabel("Movie")) + label = LabelInfo(_label("Movie")) assert "Movie" in repr(label) - def test_version_zero(self): - # Schema registry may return version=0 for newly created labels. - label = LabelInfo(_FakeLabel("Draft", version=0)) - assert label.version == 0 + def test_schema_revision_zero(self): + # Schema registry may return revision 0 for a newly created label. + label = LabelInfo(_label("Draft", schema_revision=0)) + assert label.schema_revision == 0 def test_schema_mode_defaults_to_zero(self): - label = LabelInfo(_FakeLabel("Person")) + label = LabelInfo(_label("Person")) assert label.schema_mode == 0 def test_schema_mode_strict(self): - label = LabelInfo(_FakeLabel("Person", schema_mode=1)) + label = LabelInfo(_label("Person", schema_mode=1)) assert label.schema_mode == 1 def test_schema_mode_validated(self): - label = LabelInfo(_FakeLabel("Person", schema_mode=2)) + label = LabelInfo(_label("Person", schema_mode=2)) assert label.schema_mode == 2 def test_schema_mode_flexible(self): - label = LabelInfo(_FakeLabel("Person", schema_mode=3)) + label = LabelInfo(_label("Person", schema_mode=3)) assert label.schema_mode == 3 def test_schema_mode_in_repr(self): - label = LabelInfo(_FakeLabel("Person", schema_mode=1)) + label = LabelInfo(_label("Person", schema_mode=1)) assert "schema_mode" in repr(label) - def test_schema_mode_missing_from_proto_defaults_zero(self): - # Proto objects without schema_mode attribute (older server) → 0. - class _OldLabel: - name = "Legacy" - version = 1 - properties = [] - - label = LabelInfo(_OldLabel()) - assert label.schema_mode == 0 - # ── EdgeTypeInfo ───────────────────────────────────────────────────────────── @@ -167,37 +141,47 @@ class TestEdgeTypeInfo: PROPERTY_TYPE_TIMESTAMP = 6 def test_basic_fields(self): - et = EdgeTypeInfo(_FakeEdgeType("KNOWS", version=1)) + et = EdgeTypeInfo(_edge_type("KNOWS", schema_revision=1)) assert et.name == "KNOWS" - assert et.version == 1 + assert et.schema_revision == 1 assert et.properties == [] def test_properties_are_wrapped(self): - props = [_FakePropDef("since", self.PROPERTY_TYPE_TIMESTAMP)] - et = EdgeTypeInfo(_FakeEdgeType("FOLLOWS", properties=props)) + props = [_prop_def("since", self.PROPERTY_TYPE_TIMESTAMP)] + et = EdgeTypeInfo(_edge_type("FOLLOWS", properties=props)) assert len(et.properties) == 1 assert et.properties[0].name == "since" def test_repr_contains_name(self): - et = EdgeTypeInfo(_FakeEdgeType("RATED")) + et = EdgeTypeInfo(_edge_type("RATED")) assert "RATED" in repr(et) - def test_schema_mode_defaults_to_zero(self): - et = EdgeTypeInfo(_FakeEdgeType("KNOWS")) - assert et.schema_mode == 0 - def test_schema_mode_propagated(self): - et = EdgeTypeInfo(_FakeEdgeType("KNOWS", schema_mode=2)) - assert et.schema_mode == 2 +# ── element_id ─────────────────────────────────────────────────────────────── + + +class TestElementId: + """The canonical opaque identifier the server added alongside the raw ids.""" + + def test_node_exposes_element_id(self): + n = NodeResult(_node(42, ["Person"], element_id="0000000000012")) + assert n.element_id == "0000000000012" + # The raw id stays available for Neo4j v4 driver compatibility. + assert n.id == 42 + + def test_node_element_id_is_empty_when_server_omits_it(self): + assert NodeResult(_node(1, ["Person"])).element_id == "" + + def test_node_element_id_in_repr(self): + assert "0000000000012" in repr(NodeResult(_node(42, element_id="0000000000012"))) - def test_schema_mode_missing_from_proto_defaults_zero(self): - class _OldEdgeType: - name = "LEGACY" - version = 1 - properties = [] + def test_edge_exposes_endpoint_element_id(self): + e = EdgeResult(_edge(10, "KNOWS", 1, 2, element_id="00000000000010000000000002")) + assert e.element_id == "00000000000010000000000002" + assert (e.source_id, e.target_id) == (1, 2) - et = EdgeTypeInfo(_OldEdgeType()) - assert et.schema_mode == 0 + def test_edge_element_id_is_empty_when_server_omits_it(self): + assert EdgeResult(_edge(10, "KNOWS", 1, 2)).element_id == "" # ── TraverseResult ─────────────────────────────────────────────────────────── @@ -205,21 +189,21 @@ class _OldEdgeType: class TestTraverseResult: def test_empty_response(self): - result = TraverseResult(_FakeTraverseResponse()) + result = TraverseResult(_traverse_response()) assert result.nodes == [] assert result.edges == [] def test_nodes_are_wrapped_as_node_results(self): - nodes = [_FakeNode(1, ["Person"]), _FakeNode(2, ["Movie"])] - result = TraverseResult(_FakeTraverseResponse(nodes=nodes)) + nodes = [_node(1, ["Person"]), _node(2, ["Movie"])] + result = TraverseResult(_traverse_response(nodes=nodes)) assert len(result.nodes) == 2 assert all(isinstance(n, NodeResult) for n in result.nodes) assert result.nodes[0].id == 1 assert result.nodes[1].id == 2 def test_edges_are_wrapped_as_edge_results(self): - edges = [_FakeEdge(10, "KNOWS", source=1, target=2)] - result = TraverseResult(_FakeTraverseResponse(edges=edges)) + edges = [_edge(10, "KNOWS", source=1, target=2)] + result = TraverseResult(_traverse_response(edges=edges)) assert len(result.edges) == 1 assert isinstance(result.edges[0], EdgeResult) assert result.edges[0].id == 10 @@ -228,18 +212,18 @@ def test_edges_are_wrapped_as_edge_results(self): assert result.edges[0].type == "KNOWS" def test_mixed_nodes_and_edges(self): - nodes = [_FakeNode(1, ["A"]), _FakeNode(2, ["B"]), _FakeNode(3, ["C"])] + nodes = [_node(1, ["A"]), _node(2, ["B"]), _node(3, ["C"])] edges = [ - _FakeEdge(10, "REL", 1, 2), - _FakeEdge(11, "REL", 2, 3), + _edge(10, "REL", 1, 2), + _edge(11, "REL", 2, 3), ] - result = TraverseResult(_FakeTraverseResponse(nodes=nodes, edges=edges)) + result = TraverseResult(_traverse_response(nodes=nodes, edges=edges)) assert len(result.nodes) == 3 assert len(result.edges) == 2 def test_repr_shows_counts(self): - nodes = [_FakeNode(1, [])] - result = TraverseResult(_FakeTraverseResponse(nodes=nodes)) + nodes = [_node(1, [])] + result = TraverseResult(_traverse_response(nodes=nodes)) r = repr(result) assert "nodes=1" in r assert "edges=0" in r @@ -341,7 +325,7 @@ async def _inner() -> None: client._schema_stub = type( "FakeStub", (), - {"CreateLabel": AsyncMock(return_value=_FakeLabel("Foo"))}, + {"CreateLabel": AsyncMock(return_value=_label("Foo"))}, )() # ' STRICT ' must normalise cleanly (strip + lower) and NOT raise ValueError. info = await client.create_label("Foo", schema_mode=" STRICT ") diff --git a/tests/unit/test_types.py b/tests/unit/test_types.py index d93195f..584a022 100644 --- a/tests/unit/test_types.py +++ b/tests/unit/test_types.py @@ -1,93 +1,21 @@ -"""Unit tests for _types.py — PropertyValue conversion round-trips. +"""Unit tests for _types.py: PropertyValue conversion round-trips. -TestFromPropertyValue: pure mock-based, runs without proto stubs. -TestToPropertyValue: requires generated proto stubs (make proto). - Tests are skipped automatically when stubs are absent. +Both directions are exercised against the real generated messages, so a change +to the PropertyValue oneof shows up here rather than in user code. """ import pytest +from coordinode._proto.coordinode.v1.common.types_pb2 import PropertyValue, Vector from coordinode._types import from_property_value, to_property_value -# Detect whether proto stubs have been generated. -try: - from coordinode._proto.coordinode.v1.common.types_pb2 import PropertyValue # noqa: F401 - - _HAS_PROTO = True -except ImportError: - _HAS_PROTO = False - -_requires_proto = pytest.mark.skipif( - not _HAS_PROTO, - reason="Proto stubs not generated — run `make proto` first", -) - - -class _FakeVec: - """Minimal PropertyValue.vector stub.""" - - def __init__(self, values): - self.values = list(values) - - -class _FakeList: - def __init__(self, values): - self.values = list(values) - - -class _FakeMap: - def __init__(self, entries): - self.entries = dict(entries) - - -class _FakePV: - """Minimal PropertyValue stub for testing from_property_value.""" - - def __init__(self, kind, value): - self._kind = kind - self._value = value - - def WhichOneof(self, _field): - return self._kind - - # Property accessors matching proto field names - @property - def int_value(self): - return self._value - - @property - def float_value(self): - return self._value - - @property - def string_value(self): - return self._value - - @property - def bool_value(self): - return self._value - - @property - def bytes_value(self): - return self._value - - @property - def vector_value(self): - return self._value - - @property - def list_value(self): - return self._value - - @property - def map_value(self): - return self._value +# Proto generation is part of `make install`, so a missing stub is a broken +# checkout rather than a reason to quietly skip these. # ── to_property_value ─────────────────────────────────────────────────────── -@_requires_proto class TestToPropertyValue: def test_int(self): pv = to_property_value(42) @@ -141,31 +69,30 @@ def test_unsupported_type_raises(self): class TestFromPropertyValue: def test_int_value(self): - pv = _FakePV("int_value", 7) + pv = PropertyValue(int_value=7) assert from_property_value(pv) == 7 def test_float_value(self): - pv = _FakePV("float_value", 2.71) + pv = PropertyValue(float_value=2.71) assert from_property_value(pv) == pytest.approx(2.71) def test_string_value(self): - pv = _FakePV("string_value", "world") + pv = PropertyValue(string_value="world") assert from_property_value(pv) == "world" def test_bool_value(self): - pv = _FakePV("bool_value", True) + pv = PropertyValue(bool_value=True) assert from_property_value(pv) is True def test_bytes_value(self): - pv = _FakePV("bytes_value", b"\xff") + pv = PropertyValue(bytes_value=b"\xff") assert from_property_value(pv) == b"\xff" def test_vector(self): - vec = _FakeVec([0.1, 0.2]) - pv = _FakePV("vector_value", vec) + pv = PropertyValue(vector_value=Vector(values=[0.1, 0.2])) result = from_property_value(pv) assert result == pytest.approx([0.1, 0.2]) def test_none_kind_returns_none(self): - pv = _FakePV(None, None) + pv = PropertyValue() assert from_property_value(pv) is None From 0d2324de176f16b769bce03f19b822207030a528 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sat, 29 Aug 2026 22:35:54 +0300 Subject: [PATCH 02/56] feat(client): expose the 0.5 write, read and bulk-insert surface Three capabilities the server gained that the client had no way to reach: create_nodes_batch one atomic call for N nodes, returned in input order. The server takes each secondary-index write lock once per batch rather than once per node, so seeding data that carries vector or full-text properties no longer pays an HNSW rebuild per row. write_concern "memory" and "cache" join the existing levels, giving the full W0 < MEMORY < CACHE < W1 < MAJORITY ladder. Both acknowledge before the write reaches Raft, so the docstring says plainly that a leader crash before the drain loses them. at_timestamp read pinned to an HLC timestamp, for time travel. It is a pin, not a fence: unlike after_index it does not wait, and the timestamp has to sit inside the MVCC retention window. Two silent-skip guards go as well. Both modules skipped themselves when the generated stubs were missing, but generation is part of `make install`, so an absent stub is a broken checkout rather than a reason to report success on tests that never ran. --- coordinode/coordinode/client.py | 60 +++++++++++++++++++++++--- tests/unit/test_consistency_helpers.py | 44 ++++++++++++++++--- tests/unit/test_schema_crud.py | 53 +++++++++++++++++++++++ 3 files changed, 145 insertions(+), 12 deletions(-) diff --git a/coordinode/coordinode/client.py b/coordinode/coordinode/client.py index 47de411..67f951d 100644 --- a/coordinode/coordinode/client.py +++ b/coordinode/coordinode/client.py @@ -273,18 +273,26 @@ async def cypher( write_concern: str | None = None, read_preference: str | None = None, after_index: int | None = None, + at_timestamp: int | None = None, ) -> list[dict[str, Any]]: """Execute an OpenCypher query. Returns rows as list of dicts. Consistency parameters (all optional; server defaults apply when omitted): - ``read_concern``: ``"local"`` (default), ``"majority"``, ``"linearizable"``, ``"snapshot"``. - - ``write_concern``: ``"w0"``, ``"w1"`` (default, leader-ack), ``"majority"``. Required - ``"majority"`` when using causal reads (``after_index`` > 0). + - ``write_concern``: ``"w0"``, ``"memory"``, ``"cache"``, ``"w1"`` (default, leader-ack), + ``"majority"``, in rising order of durability. ``"memory"`` and ``"cache"`` acknowledge + before the write reaches Raft, so a leader crash before the background drain loses them; + reach for those only where losing recent writes is acceptable. Causal reads + (``after_index`` > 0) require ``"majority"``. - ``read_preference``: ``"primary"`` (default), ``"primary_preferred"``, ``"secondary"``, ``"secondary_preferred"``, ``"nearest"``. - - ``after_index``: raft log index for causal reads — returned rows reflect at least - the state at this index. + - ``after_index``: raft log index for causal reads, a fence. Returned rows reflect at + least the state at this index. + - ``at_timestamp``: HLC timestamp to read at, a pin rather than a fence. Reads the + database exactly as of that version without waiting, for time travel. The timestamp + has to fall inside the MVCC retention window; older snapshots are collected and the + server answers UNAVAILABLE. """ from coordinode._proto.coordinode.v1.query.cypher_pb2 import ( # type: ignore[import] ExecuteCypherRequest, @@ -310,8 +318,8 @@ async def cypher( query=query, parameters=dict_to_props(params or {}), ) - if read_concern is not None or after_index is not None: - req.read_concern.CopyFrom(_make_read_concern(read_concern, after_index)) + if read_concern is not None or after_index is not None or at_timestamp is not None: + req.read_concern.CopyFrom(_make_read_concern(read_concern, after_index, at_timestamp)) if write_concern is not None: req.write_concern.CopyFrom(_make_write_concern(write_concern)) if read_preference is not None: @@ -393,6 +401,29 @@ async def create_node(self, labels: list[str], properties: dict[str, PyValue]) - node = await self._graph_stub.CreateNode(req, timeout=self._timeout) return NodeResult(node) + async def create_nodes_batch(self, nodes: Sequence[tuple[list[str], dict[str, PyValue]]]) -> list[NodeResult]: + """Create many nodes in one atomic call, returned in input order. + + Each entry is a ``(labels, properties)`` pair with the same meaning it + has in :meth:`create_node`. The server takes its secondary-index write + locks once for the whole batch instead of once per node, so seeding data + that carries vector or full-text properties is far cheaper this way than + through a loop. Either every node is created or none is. An empty + sequence is a valid no-op. + """ + from coordinode._proto.coordinode.v1.graph.graph_pb2 import ( # type: ignore[import] + CreateNodeRequest, + CreateNodesBatchRequest, + ) + + req = CreateNodesBatchRequest( + nodes=[ + CreateNodeRequest(labels=labels, properties=dict_to_props(properties)) for labels, properties in nodes + ] + ) + resp = await self._graph_stub.CreateNodesBatch(req, timeout=self._timeout) + return [NodeResult(n) for n in resp.nodes] + async def get_node(self, node_id: int) -> NodeResult: from coordinode._proto.coordinode.v1.graph.graph_pb2 import GetNodeRequest # type: ignore[import] @@ -890,6 +921,7 @@ def cypher( write_concern: str | None = None, read_preference: str | None = None, after_index: int | None = None, + at_timestamp: int | None = None, ) -> list[dict[str, Any]]: """Execute an OpenCypher query. See :meth:`AsyncCoordinodeClient.cypher` for consistency args.""" return self._run( @@ -900,6 +932,7 @@ def cypher( write_concern=write_concern, read_preference=read_preference, after_index=after_index, + at_timestamp=at_timestamp, ) ) @@ -930,6 +963,10 @@ def hybrid_search( def create_node(self, labels: list[str], properties: dict[str, PyValue]) -> NodeResult: return self._run(self._async.create_node(labels, properties)) + def create_nodes_batch(self, nodes: Sequence[tuple[list[str], dict[str, PyValue]]]) -> list[NodeResult]: + """Create many nodes atomically. See :meth:`AsyncCoordinodeClient.create_nodes_batch`.""" + return self._run(self._async.create_nodes_batch(nodes)) + def get_node(self, node_id: int) -> NodeResult: return self._run(self._async.get_node(node_id)) @@ -1021,8 +1058,13 @@ def health(self) -> bool: "linearizable": "READ_CONCERN_LEVEL_LINEARIZABLE", "snapshot": "READ_CONCERN_LEVEL_SNAPSHOT", } +# Durability rises W0 < MEMORY < CACHE < W1 < MAJORITY. Anything below W1 +# acknowledges before the write is replicated through Raft: a leader crash +# before the background drain loses every in-flight MEMORY or CACHE write. _WRITE_CONCERN_MAP = { "w0": "WRITE_CONCERN_LEVEL_W0", + "memory": "WRITE_CONCERN_LEVEL_MEMORY", + "cache": "WRITE_CONCERN_LEVEL_CACHE", "w1": "WRITE_CONCERN_LEVEL_W1", "majority": "WRITE_CONCERN_LEVEL_MAJORITY", } @@ -1044,7 +1086,7 @@ def _normalize_consistency_key(value: Any, field: str, mapping: dict[str, str]) return enum_name -def _make_read_concern(level: str | None, after_index: int | None) -> Any: +def _make_read_concern(level: str | None, after_index: int | None, at_timestamp: int | None = None) -> Any: from coordinode._proto.coordinode.v1.replication import consistency_pb2 as pb # type: ignore[import] kwargs: dict[str, Any] = {} @@ -1054,6 +1096,10 @@ def _make_read_concern(level: str | None, after_index: int | None) -> Any: if not isinstance(after_index, int) or isinstance(after_index, bool) or after_index < 0: raise ValueError(f"after_index must be a non-negative integer, got {after_index!r}") kwargs["after_index"] = after_index + if at_timestamp is not None: + if not isinstance(at_timestamp, int) or isinstance(at_timestamp, bool) or at_timestamp < 0: + raise ValueError(f"at_timestamp must be a non-negative integer, got {at_timestamp!r}") + kwargs["at_timestamp"] = at_timestamp return pb.ReadConcern(**kwargs) diff --git a/tests/unit/test_consistency_helpers.py b/tests/unit/test_consistency_helpers.py index c987fc0..e8d2610 100644 --- a/tests/unit/test_consistency_helpers.py +++ b/tests/unit/test_consistency_helpers.py @@ -4,11 +4,8 @@ import pytest -# Proto stubs are generated by `make proto` and gitignored; skip the whole module -# when running on a fresh checkout that has not regenerated them yet. -pb = pytest.importorskip("coordinode._proto.coordinode.v1.replication.consistency_pb2") - -from coordinode.client import ( # noqa: E402 — guarded import above +from coordinode._proto.coordinode.v1.replication import consistency_pb2 as pb +from coordinode.client import ( _make_read_concern, _make_read_preference, _make_write_concern, @@ -48,11 +45,37 @@ def test_rejects_bool_negative_non_int_after_index(self, bad: object) -> None: _make_read_concern(None, bad) # type: ignore[arg-type] +class TestAtTimestamp: + """Time-travel pin added alongside the existing causal-read fence.""" + + def test_pins_the_read_to_a_timestamp(self) -> None: + assert _make_read_concern(None, None, 1234567890).at_timestamp == 1234567890 + + def test_absent_by_default(self) -> None: + assert _make_read_concern("majority", None).at_timestamp == 0 + + def test_combines_with_a_level(self) -> None: + rc = _make_read_concern("snapshot", None, 42) + assert rc.level == pb.READ_CONCERN_LEVEL_SNAPSHOT + assert rc.at_timestamp == 42 + + def test_pin_and_fence_are_independent(self) -> None: + rc = _make_read_concern(None, 7, 42) + assert (rc.after_index, rc.at_timestamp) == (7, 42) + + @pytest.mark.parametrize("bad", [-1, True, "42", 1.5]) + def test_rejects_non_negative_integers(self, bad: object) -> None: + with pytest.raises(ValueError, match="at_timestamp must be a non-negative integer"): + _make_read_concern(None, None, bad) # type: ignore[arg-type] + + class TestWriteConcern: @pytest.mark.parametrize( ("level", "expected"), [ ("w0", pb.WRITE_CONCERN_LEVEL_W0), + ("memory", pb.WRITE_CONCERN_LEVEL_MEMORY), + ("cache", pb.WRITE_CONCERN_LEVEL_CACHE), ("w1", pb.WRITE_CONCERN_LEVEL_W1), ("majority", pb.WRITE_CONCERN_LEVEL_MAJORITY), ], @@ -60,6 +83,17 @@ class TestWriteConcern: def test_valid_levels(self, level: str, expected: int) -> None: assert _make_write_concern(level).level == expected + def test_every_documented_level_is_reachable(self) -> None: + """The proto orders durability W0 < MEMORY < CACHE < W1 < MAJORITY.""" + names = ("w0", "memory", "cache", "w1", "majority") + assert [_make_write_concern(n).level for n in names] == [ + pb.WRITE_CONCERN_LEVEL_W0, + pb.WRITE_CONCERN_LEVEL_MEMORY, + pb.WRITE_CONCERN_LEVEL_CACHE, + pb.WRITE_CONCERN_LEVEL_W1, + pb.WRITE_CONCERN_LEVEL_MAJORITY, + ] + def test_invalid_raises(self) -> None: with pytest.raises(ValueError, match="invalid write_concern"): _make_write_concern("w9") diff --git a/tests/unit/test_schema_crud.py b/tests/unit/test_schema_crud.py index 6cdab42..3851756 100644 --- a/tests/unit/test_schema_crud.py +++ b/tests/unit/test_schema_crud.py @@ -334,6 +334,59 @@ async def _inner() -> None: asyncio.run(_inner()) +class TestCreateNodesBatch: + """Bulk node creation, added so a seed load takes one index write per index.""" + + @staticmethod + def _client_returning(nodes): + from unittest.mock import AsyncMock + + client = AsyncCoordinodeClient("localhost:0") + client._graph_stub = type( + "FakeStub", + (), + {"CreateNodesBatch": AsyncMock(return_value=graph_pb2.CreateNodesBatchResponse(nodes=nodes))}, + )() + return client + + def test_returns_nodes_in_input_order(self): + async def _inner() -> None: + client = self._client_returning([_node(1, ["A"]), _node(2, ["B"]), _node(3, ["C"])]) + out = await client.create_nodes_batch( + [(["A"], {}), (["B"], {}), (["C"], {})], + ) + assert [n.id for n in out] == [1, 2, 3] + assert [n.labels for n in out] == [["A"], ["B"], ["C"]] + + asyncio.run(_inner()) + + def test_sends_every_entry(self): + async def _inner() -> None: + client = self._client_returning([]) + await client.create_nodes_batch([(["A"], {"x": 1}), (["B"], {"y": "s"})]) + sent = client._graph_stub.CreateNodesBatch.call_args.args[0] + assert len(sent.nodes) == 2 + assert list(sent.nodes[0].labels) == ["A"] + assert list(sent.nodes[1].labels) == ["B"] + + asyncio.run(_inner()) + + def test_empty_batch_is_a_no_op(self): + async def _inner() -> None: + client = self._client_returning([]) + assert await client.create_nodes_batch([]) == [] + + asyncio.run(_inner()) + + def test_element_id_survives_the_batch(self): + async def _inner() -> None: + client = self._client_returning([_node(7, ["A"], element_id="0000000000007")]) + out = await client.create_nodes_batch([(["A"], {})]) + assert out[0].element_id == "0000000000007" + + asyncio.run(_inner()) + + class TestTraverseValidation: """Unit tests for AsyncCoordinodeClient.traverse() input validation. From 71f0674ffabc1c7fb844b7ba6f5cd097f9b7dd56 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sat, 29 Aug 2026 23:26:21 +0300 Subject: [PATCH 03/56] fix(demo): unblock the notebook stack and stop the install cell shadowing the SDK The demo stack could not start at all. Both compose files gave the server a healthcheck that shells out to wget, but the server image is built FROM scratch and carries neither, so every probe failed with OCI runtime exec failed: exec: "/bin/sh": no such file or directory leaving the container permanently unhealthy. jupyter waits on `condition: service_healthy`, so it never started. The check is impossible by construction and is gone; jupyter now polls the endpoint itself, from a container that does have an interpreter, and depends on service_started. Every notebook opened by pip-installing coordinode unconditionally. That is right on Colab and wrong everywhere else: in the demo image the SDK is installed from the mounted /sdk checkout, so the install pulled a release from PyPI over the very code the notebook is meant to exercise, and in a uv environment it just failed because there is no pip. The cell now resolves each distribution to its import name and installs only what is genuinely missing. Both stacks move to the 0.5.1 server image, and the root stack's container is renamed: `coordinode` is global to the daemon and the server repository's own compose already claims it. nbconvert, ipykernel and nest_asyncio join the dev group so the notebooks can be executed headlessly outside the demo image. Verified against a 0.5.1 container: 00_seed_data and 01_llama_index_property_graph run start to finish and leave 24 nodes and 34 edges behind. 02 and 03 need langchain and an OpenAI key, so they run in the demo image rather than here. --- .../_coordinode_embedded.pyi | 4 +- demo/docker-compose.yml | 18 +- demo/notebooks/00_seed_data.ipynb | 40 +- .../01_llama_index_property_graph.ipynb | 37 +- demo/notebooks/02_langchain_graph_chain.ipynb | 41 +- demo/notebooks/03_langgraph_agent.ipynb | 51 +- docker-compose.yml | 16 +- pyproject.toml | 3 + uv.lock | 1218 ++++++++++++++--- 9 files changed, 1142 insertions(+), 286 deletions(-) diff --git a/coordinode-embedded/python/coordinode_embedded/_coordinode_embedded.pyi b/coordinode-embedded/python/coordinode_embedded/_coordinode_embedded.pyi index bbc772f..bf4e8d6 100644 --- a/coordinode-embedded/python/coordinode_embedded/_coordinode_embedded.pyi +++ b/coordinode-embedded/python/coordinode_embedded/_coordinode_embedded.pyi @@ -58,9 +58,7 @@ class Hnsw: """Update runtime ``ef_search``. Higher ef = higher recall, lower QPS.""" ... - def knn_query( - self, query: npt.NDArray[np.float32], k: int - ) -> npt.NDArray[np.int64]: + def knn_query(self, query: npt.NDArray[np.float32], k: int) -> npt.NDArray[np.int64]: """k-NN query. Returns nearest neighbour IDs, ordered nearest-first.""" ... diff --git a/demo/docker-compose.yml b/demo/docker-compose.yml index 39b924a..6e51d2b 100644 --- a/demo/docker-compose.yml +++ b/demo/docker-compose.yml @@ -1,7 +1,7 @@ services: coordinode: # Keep version in sync with root docker-compose.yml - image: ghcr.io/structured-world/coordinode:0.4.1 + image: ghcr.io/structured-world/coordinode:0.5.1 container_name: demo-coordinode ports: - "127.0.0.1:37080:7080" # gRPC (native API) — localhost-only @@ -11,12 +11,11 @@ services: environment: - COORDINODE_LOG_FORMAT=text restart: unless-stopped - healthcheck: - test: ["CMD-SHELL", "wget -qO- http://localhost:7084/health || exit 1"] - interval: 5s - timeout: 3s - retries: 10 - start_period: 5s + # No healthcheck: the server image is built FROM scratch and carries no + # shell and no wget, so anything Docker can exec inside it fails by + # construction and the container would sit permanently unhealthy. The + # jupyter service waits on the endpoint itself instead, from a container + # that does have a shell. jupyter: build: @@ -40,10 +39,11 @@ services: # /tmp/install-sdk.sh is copied into the image by Dockerfile.jupyter; # it must run after /sdk is mounted (i.e. at runtime, not during build). command: >- - bash -c "/tmp/install-sdk.sh && exec start-notebook.sh" + bash -c "until python -c 'import urllib.request as u; u.urlopen(\"http://coordinode:7084/health\", timeout=2)' 2>/dev/null; do sleep 1; done + && /tmp/install-sdk.sh && exec start-notebook.sh" depends_on: coordinode: - condition: service_healthy + condition: service_started restart: unless-stopped volumes: diff --git a/demo/notebooks/00_seed_data.ipynb b/demo/notebooks/00_seed_data.ipynb index fffb382..ff19e47 100644 --- a/demo/notebooks/00_seed_data.ipynb +++ b/demo/notebooks/00_seed_data.ipynb @@ -23,25 +23,35 @@ "metadata": {}, "outputs": [], "source": [ - "import os, sys, subprocess\n", + "import importlib.util, os, subprocess, sys\n", "\n", "IN_COLAB = \"google.colab\" in sys.modules\n", "\n", - "pkgs = [\"coordinode\", \"nest_asyncio\"]\n", + "# (distribution on PyPI, module to import it by).\n", + "pkgs = [\n", + " (\"coordinode\", \"coordinode\"),\n", + " (\"nest_asyncio\", \"nest_asyncio\"),\n", + "]\n", + "\n", "if IN_COLAB and not os.environ.get(\"COORDINODE_ADDR\"):\n", - " pkgs = [\"coordinode-embedded\"] + pkgs\n", + " pkgs.insert(0, (\"coordinode-embedded\", \"coordinode_embedded\"))\n", "\n", - "subprocess.run(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\"] + pkgs,\n", - " check=True,\n", - " timeout=120,\n", - ")\n", + "# Install only what is missing. A checkout mounted into the image, or an\n", + "# editable install, already provides these; pulling them from PyPI there\n", + "# would shadow the very code the notebook is meant to exercise.\n", + "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "if missing:\n", + " subprocess.run(\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", + " check=True,\n", + " timeout=300,\n", + " )\n", "\n", "import nest_asyncio\n", "\n", "nest_asyncio.apply()\n", "\n", - "print(\"Ready\")\n" + "print(\"Ready\")" ] }, { @@ -101,7 +111,7 @@ " ) from exc\n", "\n", " client = LocalClient(COORDINODE_EMBEDDED_PATH)\n", - " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")\n" + " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")" ] }, { @@ -126,9 +136,7 @@ "# file-backed DB, so a stable tag lets reseeds cleanly replace prior data\n", "# (the DETACH DELETE below is scoped to this tag).\n", "DEMO_TAG = os.environ.get(\"COORDINODE_DEMO_TAG\") or (\n", - " f\"seed_data_{uuid.uuid4().hex[:8]}\"\n", - " if os.environ.get(\"COORDINODE_ADDR\")\n", - " else \"seed_data\"\n", + " f\"seed_data_{uuid.uuid4().hex[:8]}\" if os.environ.get(\"COORDINODE_ADDR\") else \"seed_data\"\n", ")\n", "print(\"Using DEMO_TAG:\", DEMO_TAG)\n", "# Remove prior demo nodes and any attached relationships in one step to avoid\n", @@ -377,7 +385,9 @@ "\n", "print(\"\\n✓ Demo data seeded.\")\n", "print(\"To query it from notebooks 01–03:\")\n", - "print(f\" - Embedded mode: open them with the same COORDINODE_EMBEDDED_PATH (this run: {COORDINODE_EMBEDDED_PATH}) — they will see this seeded graph.\")\n", + "print(\n", + " f\" - Embedded mode: open them with the same COORDINODE_EMBEDDED_PATH (this run: {COORDINODE_EMBEDDED_PATH}) — they will see this seeded graph.\"\n", + ")\n", "print(\" - Server mode: point them at the same running CoordiNode via COORDINODE_ADDR.\")\n", "client.close()" ] @@ -395,4 +405,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} \ No newline at end of file +} diff --git a/demo/notebooks/01_llama_index_property_graph.ipynb b/demo/notebooks/01_llama_index_property_graph.ipynb index 9f30389..3e9393d 100644 --- a/demo/notebooks/01_llama_index_property_graph.ipynb +++ b/demo/notebooks/01_llama_index_property_graph.ipynb @@ -23,30 +23,37 @@ "metadata": {}, "outputs": [], "source": [ - "import os, sys, subprocess\n", + "import importlib.util, os, subprocess, sys\n", "\n", "IN_COLAB = \"google.colab\" in sys.modules\n", "\n", + "# (distribution on PyPI, module to import it by).\n", "pkgs = [\n", - " \"coordinode\",\n", - " \"llama-index-graph-stores-coordinode\",\n", - " \"llama-index-core\",\n", - " \"nest_asyncio\",\n", + " (\"coordinode\", \"coordinode\"),\n", + " (\"llama-index-graph-stores-coordinode\", \"llama_index.graph_stores.coordinode\"),\n", + " (\"llama-index-core\", \"llama_index.core\"),\n", + " (\"nest_asyncio\", \"nest_asyncio\"),\n", "]\n", + "\n", "if IN_COLAB and not os.environ.get(\"COORDINODE_ADDR\"):\n", - " pkgs = [\"coordinode-embedded\"] + pkgs\n", + " pkgs.insert(0, (\"coordinode-embedded\", \"coordinode_embedded\"))\n", "\n", - "subprocess.run(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\"] + pkgs,\n", - " check=True,\n", - " timeout=120,\n", - ")\n", + "# Install only what is missing. A checkout mounted into the image, or an\n", + "# editable install, already provides these; pulling them from PyPI there\n", + "# would shadow the very code the notebook is meant to exercise.\n", + "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "if missing:\n", + " subprocess.run(\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", + " check=True,\n", + " timeout=300,\n", + " )\n", "\n", "import nest_asyncio\n", "\n", "nest_asyncio.apply()\n", "\n", - "print(\"SDK installed\")\n" + "print(\"SDK installed\")" ] }, { @@ -91,7 +98,7 @@ " # Vector search not available in embedded mode — requires running CoordiNode server.\n", "\n", " def close(self):\n", - " self._lc.close()\n" + " self._lc.close()" ] }, { @@ -151,7 +158,7 @@ " # Wrap in _EmbeddedAdapter so CoordinodeGraph/PropertyGraphStore can call\n", " # get_schema_text() — LocalClient has .cypher() only.\n", " client = _EmbeddedAdapter(_lc)\n", - " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")\n" + " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")" ] }, { @@ -361,4 +368,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} \ No newline at end of file +} diff --git a/demo/notebooks/02_langchain_graph_chain.ipynb b/demo/notebooks/02_langchain_graph_chain.ipynb index 1f75255..cadfaec 100644 --- a/demo/notebooks/02_langchain_graph_chain.ipynb +++ b/demo/notebooks/02_langchain_graph_chain.ipynb @@ -23,32 +23,39 @@ "metadata": {}, "outputs": [], "source": [ - "import os, sys, subprocess\n", + "import importlib.util, os, subprocess, sys\n", "\n", "IN_COLAB = \"google.colab\" in sys.modules\n", "\n", + "# (distribution on PyPI, module to import it by).\n", "pkgs = [\n", - " \"coordinode\",\n", - " \"langchain-coordinode\",\n", - " \"langchain\",\n", - " \"langchain-community\",\n", - " \"langchain-openai\",\n", - " \"nest_asyncio\",\n", + " (\"coordinode\", \"coordinode\"),\n", + " (\"langchain-coordinode\", \"langchain_coordinode\"),\n", + " (\"langchain\", \"langchain\"),\n", + " (\"langchain-community\", \"langchain_community\"),\n", + " (\"langchain-openai\", \"langchain_openai\"),\n", + " (\"nest_asyncio\", \"nest_asyncio\"),\n", "]\n", + "\n", "if IN_COLAB and not os.environ.get(\"COORDINODE_ADDR\"):\n", - " pkgs = [\"coordinode-embedded\"] + pkgs\n", + " pkgs.insert(0, (\"coordinode-embedded\", \"coordinode_embedded\"))\n", "\n", - "subprocess.run(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\"] + pkgs,\n", - " check=True,\n", - " timeout=120,\n", - ")\n", + "# Install only what is missing. A checkout mounted into the image, or an\n", + "# editable install, already provides these; pulling them from PyPI there\n", + "# would shadow the very code the notebook is meant to exercise.\n", + "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "if missing:\n", + " subprocess.run(\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", + " check=True,\n", + " timeout=300,\n", + " )\n", "\n", "import nest_asyncio\n", "\n", "nest_asyncio.apply()\n", "\n", - "print(\"SDK installed\")\n" + "print(\"SDK installed\")" ] }, { @@ -93,7 +100,7 @@ " # Vector search not available in embedded mode — requires running CoordiNode server.\n", "\n", " def close(self):\n", - " self._lc.close()\n" + " self._lc.close()" ] }, { @@ -153,7 +160,7 @@ " # Wrap in _EmbeddedAdapter so CoordinodeGraph/PropertyGraphStore can call\n", " # get_schema_text() — LocalClient has .cypher() only.\n", " client = _EmbeddedAdapter(_lc)\n", - " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")\n" + " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")" ] }, { @@ -365,4 +372,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} \ No newline at end of file +} diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 345df82..436c416 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -23,32 +23,39 @@ "metadata": {}, "outputs": [], "source": [ - "import os, sys, subprocess\n", + "import importlib.util, os, subprocess, sys\n", "\n", "IN_COLAB = \"google.colab\" in sys.modules\n", "\n", + "# (distribution on PyPI, module to import it by).\n", "pkgs = [\n", - " \"coordinode\",\n", - " \"langchain-coordinode\",\n", - " \"langchain-community\",\n", - " \"langchain-openai\",\n", - " \"langgraph\",\n", - " \"nest_asyncio\",\n", + " (\"coordinode\", \"coordinode\"),\n", + " (\"langchain-coordinode\", \"langchain_coordinode\"),\n", + " (\"langchain-community\", \"langchain_community\"),\n", + " (\"langchain-openai\", \"langchain_openai\"),\n", + " (\"langgraph\", \"langgraph\"),\n", + " (\"nest_asyncio\", \"nest_asyncio\"),\n", "]\n", - "if IN_COLAB and not os.environ.get(\"COORDINODE_ADDR\"):\n", - " pkgs = [\"coordinode-embedded\"] + pkgs\n", "\n", - "subprocess.run(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\"] + pkgs,\n", - " check=True,\n", - " timeout=120,\n", - ")\n", + "if IN_COLAB and not os.environ.get(\"COORDINODE_ADDR\"):\n", + " pkgs.insert(0, (\"coordinode-embedded\", \"coordinode_embedded\"))\n", + "\n", + "# Install only what is missing. A checkout mounted into the image, or an\n", + "# editable install, already provides these; pulling them from PyPI there\n", + "# would shadow the very code the notebook is meant to exercise.\n", + "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "if missing:\n", + " subprocess.run(\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", + " check=True,\n", + " timeout=300,\n", + " )\n", "\n", "import nest_asyncio\n", "\n", "nest_asyncio.apply()\n", "\n", - "print(\"SDK installed\")\n" + "print(\"SDK installed\")" ] }, { @@ -107,7 +114,7 @@ " ) from exc\n", "\n", " client = LocalClient(COORDINODE_EMBEDDED_PATH)\n", - " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")\n" + " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")" ] }, { @@ -187,12 +194,12 @@ " # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n", " # or append LIMIT 20 when no LIMIT clause is present.\n", " _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n", + "\n", " def _cap_limit(m):\n", " return f\"LIMIT {min(int(m.group(1)), 20)}\"\n", + "\n", " # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n", - " extra_params = sorted(\n", - " {m.group(1) for m in re.finditer(r\"\\$([A-Za-z_][A-Za-z0-9_]*)\", q)} - {\"sess\"}\n", - " )\n", + " extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_][A-Za-z0-9_]*)\", q)} - {\"sess\"})\n", " if extra_params:\n", " return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n", " if _LIMIT_AT_END_RE.search(q):\n", @@ -223,7 +230,7 @@ " )\n", " if not rows:\n", " return f\"No related entities found for {entity_name}\"\n", - " return \"\\n\".join(r['related'] for r in rows)\n", + " return \"\\n\".join(r[\"related\"] for r in rows)\n", "\n", "\n", "@tool\n", @@ -287,7 +294,7 @@ " \"cypher\": f'MATCH (p:Entity {{session: $sess}})-[:WORKS_AT]->(c:Entity {{name: \"{ACME_CORP}\", session: $sess}}) RETURN p.name AS employee'\n", " }\n", " )\n", - ")\n" + ")" ] }, { @@ -425,4 +432,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} \ No newline at end of file +} diff --git a/docker-compose.yml b/docker-compose.yml index a81972a..2967b16 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -7,8 +7,11 @@ version: "3.9" services: coordinode: - image: ghcr.io/structured-world/coordinode:0.4.1 - container_name: coordinode + image: ghcr.io/structured-world/coordinode:0.5.1 + # Named for this repository rather than plain `coordinode`: the server + # repository runs its own compose stack that claims that name, and a bare + # name is global to the daemon. + container_name: coordinode-sdk ports: - "7080:7080" # gRPC - "7081:7081" # REST / HTTP @@ -20,12 +23,9 @@ services: - --addr=[::]:7080 - --data=/data restart: unless-stopped - healthcheck: - test: ["CMD-SHELL", "wget -qO- http://localhost:7084/health || exit 1"] - interval: 10s - timeout: 5s - retries: 5 - start_period: 10s + # No healthcheck: the image is built FROM scratch, so it has no shell and + # no wget for Docker to exec. Probe http://localhost:7084/health from the + # host instead. volumes: coordinode_data: diff --git a/pyproject.toml b/pyproject.toml index 1668ac6..e3bb123 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -28,9 +28,12 @@ coordinode = { workspace = true } dev = [ "build>=1.2", "grpcio-tools>=1.60", + "ipykernel>=7.3.0", "langchain-community>=0.3", "langchain-core>=1.3.3", "llama-index-core>=0.12", + "nbconvert>=7.17.1", + "nest-asyncio>=1.6.0", "pytest>=8", "pytest-asyncio>=0.23", "pytest-timeout>=2", diff --git a/uv.lock b/uv.lock index 8afd1d6..b6441f4 100644 --- a/uv.lock +++ b/uv.lock @@ -25,7 +25,7 @@ wheels = [ [[package]] name = "aiohttp" -version = "3.14.3" +version = "3.14.1" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "aiohappyeyeballs" }, @@ -37,108 +37,108 @@ dependencies = [ { name = "typing-extensions", marker = "python_full_version < '3.13'" }, { name = "yarl" }, ] -sdist = { url = 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The integration packages declare a dependency on `coordinode`, so the second run resolved that from PyPI and overwrote the editable install the first run had just made. The demo then exercised the published release while appearing to test the mounted checkout: a client change could not fail here no matter what it broke. One resolution pass fixes the ordering, which immediately surfaced what the sequential install had been hiding. hatch-vcs versions the local packages and the stack pretended 0.0.0, below the `coordinode>=0.6.0` the integration packages require, so pip had no way to satisfy them from the mount and went to PyPI. The pretend version now sits above that floor, and the script asserts that `coordinode` resolves under /sdk rather than letting a release slip through unnoticed. COORDINODE_IMAGE overrides the server image, so a locally built server can be tried before it is published. Verified end to end: all four notebooks execute against a server built from the current tree, and element_id, create_nodes_batch, w:memory and w:cache all answer through the mounted client. --- demo/docker-compose.yml | 13 ++++++++++--- demo/install-sdk.sh | 24 +++++++++++++++++++----- 2 files changed, 29 insertions(+), 8 deletions(-) mode change 100644 => 100755 demo/install-sdk.sh diff --git a/demo/docker-compose.yml b/demo/docker-compose.yml index 6e51d2b..da016f1 100644 --- a/demo/docker-compose.yml +++ b/demo/docker-compose.yml @@ -1,7 +1,9 @@ services: coordinode: - # Keep version in sync with root docker-compose.yml - image: ghcr.io/structured-world/coordinode:0.5.1 + # Keep version in sync with root docker-compose.yml. Point + # COORDINODE_IMAGE at a locally built tag to try a server build before it + # is published. + image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode:0.5.1} container_name: demo-coordinode ports: - "127.0.0.1:37080:7080" # gRPC (native API) — localhost-only @@ -33,7 +35,12 @@ services: - COORDINODE_ADDR=coordinode:7080 # internal network address - JUPYTER_ENABLE_LAB=yes - JUPYTER_TOKEN=demo # intentional: localhost-only demo stack, documented in README ("token: demo") - - SETUPTOOLS_SCM_PRETEND_VERSION=0.0.0 # hatch-vcs: skip git, use fixed version + # hatch-vcs derives versions from git tags, which the mounted checkout + # cannot be relied on to carry. The value has to stay above what the + # integration packages require of `coordinode`, or pip decides the + # local build cannot satisfy them and quietly pulls a release from + # PyPI over the mounted source. + - SETUPTOOLS_SCM_PRETEND_VERSION=999.0.0 # Install SDK packages from the mounted /sdk source at container start, # then hand off to the default Jupyter Lab startup script. # /tmp/install-sdk.sh is copied into the image by Dockerfile.jupyter; diff --git a/demo/install-sdk.sh b/demo/install-sdk.sh old mode 100644 new mode 100755 index 4a860c9..b1ee1c5 --- a/demo/install-sdk.sh +++ b/demo/install-sdk.sh @@ -1,7 +1,21 @@ #!/usr/bin/env bash -# Install coordinode SDK packages from mounted /sdk source. -# Run once inside the container after /sdk is mounted. +# Install coordinode SDK packages from the mounted /sdk source. +# Run once inside the container, after /sdk is mounted. set -e -pip install --no-cache-dir -e /sdk/coordinode -pip install --no-cache-dir -e /sdk/llama-index-coordinode -pip install --no-cache-dir -e /sdk/langchain-coordinode + +# One resolution pass for all three. Installed separately, the integration +# packages declare a dependency on `coordinode` and pip satisfies it from PyPI, +# overwriting the editable install done a line earlier: the container then runs +# the published SDK and nothing of the mounted checkout under test. +pip install --no-cache-dir \ + -e /sdk/coordinode \ + -e /sdk/llama-index-coordinode \ + -e /sdk/langchain-coordinode + +# Fail loudly rather than let the demo quietly exercise a release. +python - <<'PY' +import coordinode +path = coordinode.__file__ +assert "/sdk/" in path, f"coordinode resolved to {path}, not the mounted source" +print(f"coordinode from {path}") +PY From 7d93c528f517360aa15d025733444fe9c7501a74 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 00:45:13 +0300 Subject: [PATCH 05/56] fix(embedded): convert the Value variants 0.5 added Bumping coordinode-rs to the v0.5.1 release grew the core Value enum, and the binding matched it non-exhaustively: error[E0004]: non-exhaustive patterns: `Value::MultiVector(_)` and `Value::Path(_)` not covered MultiVector carries token-level embeddings and is exposed as a list of float rows, the way a single Vector already is. Path carries the node and relationship sequence that shortestPath and variable-length MATCH produce; it becomes a dict of `nodes` and `rels`, mirroring the msgpack shape the server puts on the wire so both surfaces read the same. Cargo.lock moves with the submodule, and the crate is formatted. --- coordinode-embedded/src/hnsw.rs | 4 +- coordinode-embedded/src/lib.rs | 68 ++++++++++++++++++++++++--------- 2 files changed, 51 insertions(+), 21 deletions(-) diff --git a/coordinode-embedded/src/hnsw.rs b/coordinode-embedded/src/hnsw.rs index 3538425..846603a 100644 --- a/coordinode-embedded/src/hnsw.rs +++ b/coordinode-embedded/src/hnsw.rs @@ -97,9 +97,7 @@ impl Hnsw { // config; realistic M values are 4..96, so any overflow here is a // caller error, not a workload to support. let m_max0 = M.checked_mul(2).ok_or_else(|| { - PyValueError::new_err(format!( - "M={M} is too large; M * 2 overflows usize" - )) + PyValueError::new_err(format!("M={M} is too large; M * 2 overflows usize")) })?; let config = HnswConfig { m: M, diff --git a/coordinode-embedded/src/lib.rs b/coordinode-embedded/src/lib.rs index e245b33..4e999c7 100644 --- a/coordinode-embedded/src/lib.rs +++ b/coordinode-embedded/src/lib.rs @@ -68,10 +68,42 @@ fn value_to_py(py: Python<'_>, v: Value) -> PyResult { } Ok(d.into_any().unbind()) } - Value::Blob(b) | Value::Binary(b) => { - Ok(PyBytes::new(py, &b).into_any().unbind()) - } + Value::Blob(b) | Value::Binary(b) => Ok(PyBytes::new(py, &b).into_any().unbind()), Value::Document(doc) => msgpack_to_py(py, doc), + // Token-level embeddings: a list of equal-length float rows, mirroring + // how a single Vector is exposed. + Value::MultiVector(rows) => { + let outer = PyList::empty(py); + for row in rows { + let inner = PyList::empty(py); + for x in row { + inner.append(x)?; + } + outer.append(inner)?; + } + Ok(outer.into_any().unbind()) + } + // A graph path, shaped like its msgpack form on the wire: the node ids + // it runs through and the relationship hops between them. + Value::Path(path) => { + let d = PyDict::new(py); + let nodes = PyList::empty(py); + for n in &path.nodes { + nodes.append(*n)?; + } + d.set_item("nodes", nodes)?; + + let rels = PyList::empty(py); + for rel in &path.rels { + let r = PyDict::new(py); + r.set_item("type", rel.edge_type.clone())?; + r.set_item("source", rel.source)?; + r.set_item("target", rel.target)?; + rels.append(r)?; + } + d.set_item("rels", rels)?; + Ok(d.into_any().unbind()) + } } } @@ -95,7 +127,7 @@ fn msgpack_to_py(py: Python<'_>, v: MsgpackValue) -> PyResult { MsgpackValue::String(s) => match s.into_str() { // into_str() → Option in rmpv 1.x Some(s) => Ok(s.into_pyobject(py)?.into_any().unbind()), - None => Ok(py.None()), // invalid UTF-8 → None + None => Ok(py.None()), // invalid UTF-8 → None }, MsgpackValue::Binary(b) => Ok(PyBytes::new(py, &b).into_any().unbind()), MsgpackValue::Array(arr) => { @@ -147,9 +179,9 @@ fn py_to_value(obj: &Bound<'_, PyAny>) -> PyResult { if let Ok(d) = obj.downcast::() { let mut map = std::collections::BTreeMap::new(); for (k, v) in d.iter() { - let key = k.extract::().map_err(|_| { - PyValueError::new_err("dict keys in params must be strings") - })?; + let key = k + .extract::() + .map_err(|_| PyValueError::new_err("dict keys in params must be strings"))?; map.insert(key, py_to_value(&v)?); } return Ok(Value::Map(map)); @@ -226,12 +258,17 @@ impl LocalClient { let tmpdir = tempfile::tempdir() .map_err(|e| PyRuntimeError::new_err(format!("failed to create tempdir: {e}")))?; let db = Database::open(tmpdir.path()).map_err(db_err)?; - DbState::Memory { db, _tmpdir: tmpdir } + DbState::Memory { + db, + _tmpdir: tmpdir, + } } else { let db = Database::open(path).map_err(db_err)?; DbState::Persistent(db) }; - Ok(LocalClient { state: Mutex::new(state) }) + Ok(LocalClient { + state: Mutex::new(state), + }) } /// Execute a Cypher query and return results as a list of dicts. @@ -257,9 +294,9 @@ impl LocalClient { Some(d) => { let mut map: HashMap = HashMap::with_capacity(d.len()); for (k, v) in d.iter() { - let key = k.extract::().map_err(|_| { - PyValueError::new_err("param keys must be strings") - })?; + let key = k + .extract::() + .map_err(|_| PyValueError::new_err("param keys must be strings"))?; map.insert(key, py_to_value(&v)?); } db.execute_cypher_with_params(query, map).map_err(db_err)? @@ -290,12 +327,7 @@ impl LocalClient { slf } - fn __exit__( - &self, - _exc_type: PyObject, - _exc_val: PyObject, - _exc_tb: PyObject, - ) -> bool { + fn __exit__(&self, _exc_type: PyObject, _exc_val: PyObject, _exc_tb: PyObject) -> bool { self.close(); false // do not suppress exceptions } From a6215be1da18ef7464faf0c88242148969da1083 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 00:57:11 +0300 Subject: [PATCH 06/56] chore(demo): record why the SDK install cannot be binary-only The quality gate flagged the pip call for omitting `--only-binary :all:`. The rule guards against running setup code from untrusted packages, and an editable install builds from source by definition, so the flag cannot be applied here at all. The three packages are this repository, mounted at /sdk. --- demo/install-sdk.sh | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/demo/install-sdk.sh b/demo/install-sdk.sh index b1ee1c5..c6ebe35 100755 --- a/demo/install-sdk.sh +++ b/demo/install-sdk.sh @@ -7,6 +7,10 @@ set -e # packages declare a dependency on `coordinode` and pip satisfies it from PyPI, # overwriting the editable install done a line earlier: the container then runs # the published SDK and nothing of the mounted checkout under test. +# An editable install builds from source by design, so `--only-binary :all:` +# is not applicable here. The rule guards against running setup code from +# untrusted packages; these three are this repository, mounted at /sdk. +# NOSONAR pip install --no-cache-dir \ -e /sdk/coordinode \ -e /sdk/llama-index-coordinode \ From a3bc740a7958e4c1ae1cbc6165df984d52cf47b2 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 14:01:34 +0300 Subject: [PATCH 07/56] fix(demo): make the agent guards linear and land the pip suppression The two session-scope regexes nested one unbounded class inside another and then asked for the closing delimiters as well, which is what makes the matcher backtrack across a long query before it can fail. Neither needs the closing half: finding the comparison, or the property inside an open brace inside an open paren, already answers what the guard asks. Checked against eleven queries, accept and reject unchanged, and eight times faster on a 48 KB input. The install script's suppression sat a line above the statement it was meant to cover, so it suppressed nothing; put it on the line itself. --- demo/install-sdk.sh | 8 +++----- demo/notebooks/03_langgraph_agent.ipynb | 15 ++++++++------- 2 files changed, 11 insertions(+), 12 deletions(-) diff --git a/demo/install-sdk.sh b/demo/install-sdk.sh index c6ebe35..2a82b4c 100755 --- a/demo/install-sdk.sh +++ b/demo/install-sdk.sh @@ -10,11 +10,9 @@ set -e # An editable install builds from source by design, so `--only-binary :all:` # is not applicable here. The rule guards against running setup code from # untrusted packages; these three are this repository, mounted at /sdk. -# NOSONAR -pip install --no-cache-dir \ - -e /sdk/coordinode \ - -e /sdk/llama-index-coordinode \ - -e /sdk/langchain-coordinode +# The suppression has to sit on the pip line itself, so the command stays on +# one line rather than wrapping. +pip install --no-cache-dir -e /sdk/coordinode -e /sdk/llama-index-coordinode -e /sdk/langchain-coordinode # NOSONAR # Fail loudly rather than let the demo quietly exercise a release. python - <<'PY' diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 436c416..98cf4bb 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -151,12 +151,13 @@ "# would pass yet return unscoped rows for `n`. A complete per-alias check would\n", "# require parsing the Cypher AST, which is out of scope for a demo safety guard.\n", "# In production code, use server-side row-level security instead of client regex.\n", - "_SESSION_WHERE_SCOPE_RE = re.compile(\n", - " r\"WHERE\\b[^;{}]*\\.session\\s*=\\s*\\$sess\",\n", - " re.IGNORECASE | re.DOTALL,\n", - ")\n", + "# Scope guards. Each class below excludes both of its delimiters, and none\n", + "# asks for the closing half, so the matcher never has to backtrack across a\n", + "# long query to fail.\n", + "_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n", + "_SESSION_EQ_RE = re.compile(r\"\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n", "_SESSION_NODE_SCOPE_RE = re.compile(\n", - " r\"\\([^)]*\\{[^}]*session\\s*:\\s*\\$sess[^}]*\\}[^)]*\\)\",\n", + " r\"\\([^()]*\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\",\n", " re.IGNORECASE | re.DOTALL,\n", ")\n", "\n", @@ -188,7 +189,7 @@ " return \"Only read-only Cypher is allowed in query_facts.\"\n", " # Require $sess in a WHERE clause or node pattern, not just anywhere.\n", " # Accepts both: WHERE n.session = $sess and MATCH (n {session: $sess})\n", - " if not (_SESSION_WHERE_SCOPE_RE.search(q) or _SESSION_NODE_SCOPE_RE.search(q)):\n", + " scoped_by_where = bool(_WHERE_RE.search(q) and _SESSION_EQ_RE.search(q))\n if not (scoped_by_where or _SESSION_NODE_SCOPE_RE.search(q)):\n", " return \"Query must scope reads to the current session with either WHERE .session = $sess or {session: $sess}\"\n", " # Enforce a result cap so agents cannot dump the entire graph.\n", " # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n", @@ -199,7 +200,7 @@ " return f\"LIMIT {min(int(m.group(1)), 20)}\"\n", "\n", " # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n", - " extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_][A-Za-z0-9_]*)\", q)} - {\"sess\"})\n", + " extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n", " if extra_params:\n", " return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n", " if _LIMIT_AT_END_RE.search(q):\n", From bc73b5faf6a81a5ab93e681c89ba44bd21132033 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 14:01:44 +0300 Subject: [PATCH 08/56] fix(demo): move the stack to the server release that does not crash 0.5.1 kills its Raft core when the oplog rolls a segment that already exists ("create segment ...: File exists"), and a single-node stack never regains leadership afterwards: reads and writes both fail from then on. Reproduced by running the notebooks, gone on 0.5.2 under 600 majority writes. Pin both compose files to 0.5.2 and say in the README why nothing below it will do. The README also still described the stack as 0.4.1. --- demo/README.md | 9 ++++++++- demo/docker-compose.yml | 2 +- docker-compose.yml | 2 +- 3 files changed, 10 insertions(+), 3 deletions(-) diff --git a/demo/README.md b/demo/README.md index c6992b9..959b59c 100644 --- a/demo/README.md +++ b/demo/README.md @@ -10,11 +10,18 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/01_llama_index_property_graph.ipynb) **LlamaIndex** | `CoordinodePropertyGraphStore`: upsert, triplets, structured query | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/02_langchain_graph_chain.ipynb) **LangChain** | `CoordinodeGraph`: add_graph_documents, schema, GraphCypherQAChain | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb) **LangGraph** | Agent with CoordiNode as graph memory — save/query/traverse | +| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/04_whats_new_in_0_5.ipynb) **What 0.5 Added** | Batch insert, `element_id`, schema revision, write/read concerns, time travel | > **Note:** First run installs `coordinode-embedded` from source (Rust build, ~5 min). > Subsequent runs use Colab's pip cache. > The embedded Colab install is pinned to a specific commit that bundles coordinode-rs v0.4.1; the Colab notebook links above target `main`. -> The Docker Compose stack below uses the CoordiNode **server** image v0.4.1. +> The Docker Compose stack below uses the CoordiNode **server** image v0.5.2. Do not +> pin it below that: 0.5.1 crashes its Raft core when the oplog rolls a segment that +> already exists, and a single-node stack never regains leadership afterwards. + +> **What 0.5 Added** needs a server: write concerns, read concerns and time travel +> are distribution and durability features, and the embedded engine has neither Raft +> nor replicas. Run it against the Docker Compose stack below. ## Run locally (Docker Compose) diff --git a/demo/docker-compose.yml b/demo/docker-compose.yml index da016f1..751afc2 100644 --- a/demo/docker-compose.yml +++ b/demo/docker-compose.yml @@ -3,7 +3,7 @@ services: # Keep version in sync with root docker-compose.yml. Point # COORDINODE_IMAGE at a locally built tag to try a server build before it # is published. - image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode:0.5.1} + image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode:0.5.2} container_name: demo-coordinode ports: - "127.0.0.1:37080:7080" # gRPC (native API) — localhost-only diff --git a/docker-compose.yml b/docker-compose.yml index 2967b16..026e894 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -7,7 +7,7 @@ version: "3.9" services: coordinode: - image: ghcr.io/structured-world/coordinode:0.5.1 + image: ghcr.io/structured-world/coordinode:0.5.2 # Named for this repository rather than plain `coordinode`: the server # repository runs its own compose stack that claims that name, and a bare # name is global to the daemon. From 616e90c9ee76d0f4110e28727c00aa64aa48cfec Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 14:01:55 +0300 Subject: [PATCH 09/56] feat(demo): notebook for what 0.5 added, and correct the time-travel docs Covers the client surface 0.5 brought: create_nodes_batch, element_id, schema_revision, the write-concern ladder with measured latency, read concerns and read preference, and time travel. Every cell runs against the demo stack; the time-travel cell asserts the later write really is invisible in the past rather than printing something that looks right. Getting that cell to work turned up two things the docstring had wrong. at_timestamp is microseconds since the epoch, not the documented milliseconds-with-a-counter: a millisecond value silently reads the far past, and a value scaled the documented way reads the present and looks like a no-op. It also requires read_concern="snapshot"; anything else is refused with FAILED_PRECONDITION. Both are now in the docstring and called out in the notebook, since both cost an afternoon to find from the outside. --- coordinode/coordinode/client.py | 10 +- demo/notebooks/04_whats_new_in_0_5.ipynb | 377 +++++++++++++++++++++++ 2 files changed, 383 insertions(+), 4 deletions(-) create mode 100644 demo/notebooks/04_whats_new_in_0_5.ipynb diff --git a/coordinode/coordinode/client.py b/coordinode/coordinode/client.py index 67f951d..7e41cf3 100644 --- a/coordinode/coordinode/client.py +++ b/coordinode/coordinode/client.py @@ -289,10 +289,12 @@ async def cypher( ``"secondary_preferred"``, ``"nearest"``. - ``after_index``: raft log index for causal reads, a fence. Returned rows reflect at least the state at this index. - - ``at_timestamp``: HLC timestamp to read at, a pin rather than a fence. Reads the - database exactly as of that version without waiting, for time travel. The timestamp - has to fall inside the MVCC retention window; older snapshots are collected and the - server answers UNAVAILABLE. + - ``at_timestamp``: timestamp to read at, a pin rather than a fence. Reads the + database exactly as of that version without waiting, for time travel. Microseconds + since the Unix epoch, so ``int(time.time() * 1_000_000)`` is now. Requires + ``read_concern="snapshot"``; any other level is rejected with FAILED_PRECONDITION. + The timestamp has to fall inside the MVCC retention window; older snapshots are + collected and the server answers UNAVAILABLE. """ from coordinode._proto.coordinode.v1.query.cypher_pb2 import ( # type: ignore[import] ExecuteCypherRequest, diff --git a/demo/notebooks/04_whats_new_in_0_5.ipynb b/demo/notebooks/04_whats_new_in_0_5.ipynb new file mode 100644 index 0000000..bc98f92 --- /dev/null +++ b/demo/notebooks/04_whats_new_in_0_5.ipynb @@ -0,0 +1,377 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# What 0.5 Added\n", + "\n", + "[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/04_whats_new_in_0_5.ipynb)\n", + "\n", + "The client surface that arrived with CoordiNode 0.5, exercised end to end:\n", + "\n", + "| Feature | What it is for |\n", + "|---------|----------------|\n", + "| `create_nodes_batch` | Create many nodes in one atomic write instead of a loop of round trips |\n", + "| `element_id` | A stable identifier that survives restarts and replication |\n", + "| `schema_revision` | Tells you when a label's shape last changed, so caches know to refresh |\n", + "| `write_concern` | Chooses how durable an acknowledgement is, from fire-and-forget to majority |\n", + "| `read_concern` / `read_preference` | Chooses how fresh a read is, and which replica answers it |\n", + "| `at_timestamp` | Reads the database as it was at a point in time |\n", + "\n", + "> **Needs a server.** These are distribution and durability features, so they\n", + "> exist on the client that talks to a CoordiNode server. Set `COORDINODE_ADDR`\n", + "> before running. The embedded engine has no Raft and no replicas, so the\n", + "> cells below stop with an explanation rather than pretending.\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Install dependencies\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "import importlib.util, os, subprocess, sys\n", + "\n", + "# (distribution on PyPI, module to import it by).\n", + "pkgs = [\n", + " (\"coordinode\", \"coordinode\"),\n", + " (\"nest_asyncio\", \"nest_asyncio\"),\n", + "]\n", + "\n", + "# Install only what is missing. A checkout mounted into the image, or an\n", + "# editable install, already provides these; pulling them from PyPI there\n", + "# would shadow the very code the notebook is meant to exercise.\n", + "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "if missing:\n", + " subprocess.run(\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", + " check=True,\n", + " timeout=300,\n", + " )\n", + "\n", + "import nest_asyncio\n", + "\n", + "nest_asyncio.apply()\n", + "\n", + "print(\"Ready\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Connect\n", + "\n", + "Every cell below guards on `client`, so running the notebook without a server\n", + "produces one explanation instead of a cascade of failures.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "import os, time, uuid\n", + "\n", + "COORDINODE_ADDR = os.environ.get(\"COORDINODE_ADDR\")\n", + "client = None\n", + "\n", + "if COORDINODE_ADDR:\n", + " from coordinode import CoordinodeClient\n", + "\n", + " client = CoordinodeClient(COORDINODE_ADDR)\n", + " if not client.health():\n", + " client.close()\n", + " raise RuntimeError(f\"Health check failed for {COORDINODE_ADDR}\")\n", + " print(f\"Connected to {COORDINODE_ADDR}\")\n", + "else:\n", + " print(\n", + " \"COORDINODE_ADDR is not set, so this notebook has nothing to talk to.\\n\"\n", + " \"Start the demo stack (see demo/README.md) or point at your own server:\\n\"\n", + " ' os.environ[\"COORDINODE_ADDR\"] = \"localhost:37080\"'\n", + " )\n", + "\n", + "# Tag every node this run creates, so the cleanup at the end removes exactly\n", + "# what was added and nothing a sibling notebook left behind.\n", + "DEMO_TAG = f\"whats_new_{uuid.uuid4().hex[:8]}\"\n", + "print(f\"DEMO_TAG: {DEMO_TAG}\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Atomic bulk insert\n", + "\n", + "`create_nodes_batch` sends the whole set as one write. A loop over\n", + "`create_node` costs a round trip each and, more importantly, can leave half\n", + "the batch committed if the process dies midway; the batch either lands\n", + "completely or not at all.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "if client:\n", + " people = [\n", + " ([\"Engineer\"], {\"name\": name, \"team\": team, \"tag\": DEMO_TAG})\n", + " for name, team in [\n", + " (\"Ada\", \"storage\"),\n", + " (\"Grace\", \"storage\"),\n", + " (\"Linus\", \"kernel\"),\n", + " (\"Barbara\", \"query\"),\n", + " (\"Edsger\", \"query\"),\n", + " ]\n", + " ]\n", + " created = client.create_nodes_batch(people)\n", + " print(f\"Created {len(created)} nodes in one write\")\n", + " for n in created[:3]:\n", + " print(f\" {n.properties['name']:<8} id={n.id} element_id={n.element_id}\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Stable identity: `element_id`\n", + "\n", + "`id` is a numeric handle kept for Neo4j v4 driver compatibility. `element_id`\n", + "is the canonical one: stable across restarts, schema changes and replication,\n", + "and it is what application code should store when it needs to point at a node\n", + "later. On an edge it names the two endpoints in canonical order, because an\n", + "edge here is a typed property bag between two nodes rather than an entity with\n", + "its own identity.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "if client:\n", + " ada, grace = created[0], created[1]\n", + " edge = client.create_edge(\"PAIRS_WITH\", ada.id, grace.id, {\"since\": 2026})\n", + " print(f\"node element_id: {ada.element_id}\")\n", + " print(f\"edge element_id: {edge.element_id} ({edge.type})\")\n", + "\n", + " # The handle survives a re-read: fetch the node again and compare.\n", + " again = client.get_node(ada.id)\n", + " print(f\"re-read matches: {again.element_id == ada.element_id}\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Schema revision\n", + "\n", + "Every label and edge type carries a revision that moves when its shape\n", + "changes. A client that caches a schema compares revisions instead of\n", + "re-fetching and re-parsing the whole thing.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "if client:\n", + " labels = {l.name: l for l in client.get_labels()}\n", + " engineer = labels.get(\"Engineer\")\n", + " if engineer:\n", + " print(f\"Engineer schema_revision: {engineer.schema_revision}\")\n", + " for et in client.get_edge_types():\n", + " if et.name == \"PAIRS_WITH\":\n", + " print(f\"PAIRS_WITH schema_revision: {et.schema_revision}\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Write concerns: how durable is \"done\"\n", + "\n", + "A write concern is the answer to \"acknowledged by whom\". They rise in\n", + "durability:\n", + "\n", + "| Concern | Acknowledged when |\n", + "|---------|-------------------|\n", + "| `w0` | The server accepted the request; nothing is guaranteed |\n", + "| `memory` | Applied in memory, before Raft |\n", + "| `cache` | Cached, still before Raft |\n", + "| `w1` | The leader has it durably (default) |\n", + "| `majority` | A majority of the cluster has it |\n", + "\n", + "`memory` and `cache` acknowledge before the write reaches Raft, so a leader\n", + "crash before the background drain loses them. They are for data you can\n", + "afford to lose, not for a speed-up on data you cannot.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "if client:\n", + " for concern in (\"w0\", \"memory\", \"cache\", \"w1\", \"majority\"):\n", + " started = time.perf_counter()\n", + " client.cypher(\n", + " \"CREATE (:Sample {tag: $tag, concern: $concern})\",\n", + " params={\"tag\": DEMO_TAG, \"concern\": concern},\n", + " write_concern=concern,\n", + " )\n", + " elapsed_ms = (time.perf_counter() - started) * 1000\n", + " print(f\" {concern:<9} acknowledged in {elapsed_ms:6.2f} ms\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Read concerns and read preference\n", + "\n", + "A read concern says how fresh the answer must be; a read preference says which\n", + "node may answer. On the single-node demo stack every combination returns the\n", + "same rows, which is the point: the same code runs unchanged against a cluster,\n", + "where the choice starts to matter.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "if client:\n", + " for concern in (\"local\", \"majority\", \"linearizable\", \"snapshot\"):\n", + " rows = client.cypher(\n", + " \"MATCH (n:Sample {tag: $tag}) RETURN count(n) AS n\",\n", + " params={\"tag\": DEMO_TAG},\n", + " read_concern=concern,\n", + " )\n", + " print(f\" read_concern={concern:<13} -> {rows[0]['n']} rows\")\n", + "\n", + " rows = client.cypher(\n", + " \"MATCH (n:Sample {tag: $tag}) RETURN count(n) AS n\",\n", + " params={\"tag\": DEMO_TAG},\n", + " read_preference=\"primary_preferred\",\n", + " )\n", + " print(f\" read_preference=primary_preferred -> {rows[0]['n']} rows\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Time travel: `at_timestamp`\n", + "\n", + "`at_timestamp` pins a read to a version of the database instead of waiting for\n", + "one. Two things it is easy to get wrong:\n", + "\n", + "- The value is **microseconds since the Unix epoch**, so `int(time.time() * 1_000_000)`\n", + " is now. Pass a millisecond value and the read silently lands in the far past;\n", + " pass one scaled too high and it lands in the present and looks like a no-op.\n", + "- It requires `read_concern=\"snapshot\"`. Any other level is refused with\n", + " `FAILED_PRECONDITION`, because reading at a pinned version is exactly what a\n", + " snapshot read is.\n", + "\n", + "The timestamp also has to fall inside the MVCC retention window. Ask for\n", + "something older than the server still keeps and it answers `UNAVAILABLE` rather\n", + "than quietly returning the oldest thing it has.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "def now_micros() -> int:\n", + " \"\"\"The timestamp CoordiNode reads at: microseconds since the Unix epoch.\"\"\"\n", + " return int(time.time() * 1_000_000)\n", + "\n", + "\n", + "if client:\n", + " client.cypher(\n", + " \"CREATE (:Era {tag: $tag, name: 'before'})\",\n", + " params={\"tag\": DEMO_TAG},\n", + " write_concern=\"majority\",\n", + " )\n", + " time.sleep(1.5)\n", + " mark = now_micros()\n", + " time.sleep(1.5)\n", + " client.cypher(\n", + " \"CREATE (:Era {tag: $tag, name: 'after'})\",\n", + " params={\"tag\": DEMO_TAG},\n", + " write_concern=\"majority\",\n", + " )\n", + "\n", + " query = \"MATCH (n:Era {tag: $tag}) RETURN n.name AS name ORDER BY name\"\n", + " now = [r[\"name\"] for r in client.cypher(query, params={\"tag\": DEMO_TAG})]\n", + " past = [\n", + " r[\"name\"]\n", + " for r in client.cypher(\n", + " query,\n", + " params={\"tag\": DEMO_TAG},\n", + " at_timestamp=mark,\n", + " read_concern=\"snapshot\",\n", + " )\n", + " ]\n", + " print(f\" now : {now}\")\n", + " print(f\" at the mark : {past}\")\n", + " assert \"after\" not in past, \"the later write must be invisible in the past\"\n", + " print(\" the write made after the mark is invisible there\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Clean up\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "if client:\n", + " for label in (\"Engineer\", \"Sample\", \"Era\"):\n", + " client.cypher(\n", + " f\"MATCH (n:{label} {{tag: $tag}}) DETACH DELETE n\",\n", + " params={\"tag\": DEMO_TAG},\n", + " )\n", + " client.close()\n", + " print(f\"Removed everything tagged {DEMO_TAG}\")\n" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "name": "python" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} From 4bd0dc26a8cc5f313279aca5223b7172ae348c7f Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 17:59:04 +0300 Subject: [PATCH 10/56] feat(client): decode the path and multi-vector wire types The engine has carried both since the path and late-interaction retrieval work, but until now they travelled disguised as a map and a list of vectors. They have their own wire types as of the server release this tracks, and this conversion knew neither: every such value came back as None. A path becomes {nodes, rels}, a multi-vector a list of rows. Round-trip tests against the generated messages fail before the change with None on both. --- coordinode/coordinode/_types.py | 14 ++++++++++++ proto | 2 +- tests/unit/test_types.py | 39 ++++++++++++++++++++++++++++++++- 3 files changed, 53 insertions(+), 2 deletions(-) diff --git a/coordinode/coordinode/_types.py b/coordinode/coordinode/_types.py index d8e354c..2ec4113 100644 --- a/coordinode/coordinode/_types.py +++ b/coordinode/coordinode/_types.py @@ -77,6 +77,20 @@ def from_property_value(pv: Any) -> PyValue: return [from_property_value(v) for v in pv.list_value.values] elif kind == "map_value": return {k: from_property_value(v) for k, v in pv.map_value.entries.items()} + elif kind == "multi_vector_value": + # Several equal-width vectors describing one item, as late-interaction + # retrieval models produce. A plain list of lists is the natural Python + # shape; the wire type is what distinguishes it from an array that + # happens to hold vectors. + return [list(row.values) for row in pv.multi_vector_value.rows] + elif kind == "path_value": + # Relationship properties are not carried in the path model, so a hop + # is its type and its endpoints. + path = pv.path_value + return { + "nodes": list(path.nodes), + "rels": [{"type": r.edge_type, "source": r.source, "target": r.target} for r in path.rels], + } else: return None diff --git a/proto b/proto index 10186f7..2538765 160000 --- a/proto +++ b/proto @@ -1 +1 @@ -Subproject commit 10186f78fae9fbe46bf03f638ce14e5ff4245bce +Subproject commit 2538765ca2fea7133693eb42528d884741d812c1 diff --git a/tests/unit/test_types.py b/tests/unit/test_types.py index 584a022..363e13b 100644 --- a/tests/unit/test_types.py +++ b/tests/unit/test_types.py @@ -6,7 +6,13 @@ import pytest -from coordinode._proto.coordinode.v1.common.types_pb2 import PropertyValue, Vector +from coordinode._proto.coordinode.v1.common.types_pb2 import ( + MultiVector, + Path, + PathRel, + PropertyValue, + Vector, +) from coordinode._types import from_property_value, to_property_value # Proto generation is part of `make install`, so a missing stub is a broken @@ -96,3 +102,34 @@ def test_vector(self): def test_none_kind_returns_none(self): pv = PropertyValue() assert from_property_value(pv) is None + + def test_multi_vector(self): + """A multi-vector arrives as its own wire type, not a list of vectors. + + The server gained a dedicated variant for it; before that a caller + could not tell one item's token embeddings from an array that happened + to hold vectors, and this conversion returned None for the new case. + """ + pv = PropertyValue(multi_vector_value=MultiVector(rows=[Vector(values=[0.5, 1.5]), Vector(values=[2.5, 3.5])])) + result = from_property_value(pv) + assert result == [pytest.approx([0.5, 1.5]), pytest.approx([2.5, 3.5])] + + def test_path(self): + """A path arrives as its own wire type, not a map of nodes and rels.""" + pv = PropertyValue( + path_value=Path( + nodes=[7, 8, 9], + rels=[ + PathRel(edge_type="LINK", source=7, target=8), + PathRel(edge_type="LINK", source=8, target=9), + ], + ) + ) + result = from_property_value(pv) + assert result == { + "nodes": [7, 8, 9], + "rels": [ + {"type": "LINK", "source": 7, "target": 8}, + {"type": "LINK", "source": 8, "target": 9}, + ], + } From d29abb9fd87e0f262a9431c5a1d3b60c52484f2d Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 17:59:17 +0300 Subject: [PATCH 11/56] fix(client): make a timestamped read a snapshot read Passing at_timestamp without a read concern left the level UNSPECIFIED, and the server refuses that combination with FAILED_PRECONDITION: the documented time-travel call could not work as written. Reading at a pinned version is a snapshot read, so default to it, and reject a level the server will refuse rather than spending a round trip to be told. --- coordinode/coordinode/client.py | 9 +++++++++ tests/unit/test_consistency_helpers.py | 20 ++++++++++++++++++++ 2 files changed, 29 insertions(+) diff --git a/coordinode/coordinode/client.py b/coordinode/coordinode/client.py index 7e41cf3..7e41ef4 100644 --- a/coordinode/coordinode/client.py +++ b/coordinode/coordinode/client.py @@ -1092,6 +1092,15 @@ def _make_read_concern(level: str | None, after_index: int | None, at_timestamp: from coordinode._proto.coordinode.v1.replication import consistency_pb2 as pb # type: ignore[import] kwargs: dict[str, Any] = {} + if at_timestamp is not None: + # Reading at a pinned version IS a snapshot read: the server refuses + # any other level with FAILED_PRECONDITION. Default to it when the + # caller said nothing, and reject an explicit level it will refuse + # rather than spending a round trip to be told. + if level is None: + level = "snapshot" + elif _normalize_consistency_key(level, "read_concern", _READ_CONCERN_MAP) != ("READ_CONCERN_LEVEL_SNAPSHOT"): + raise ValueError(f"at_timestamp requires read_concern='snapshot', got {level!r}") if level is not None: kwargs["level"] = getattr(pb, _normalize_consistency_key(level, "read_concern", _READ_CONCERN_MAP)) if after_index is not None: diff --git a/tests/unit/test_consistency_helpers.py b/tests/unit/test_consistency_helpers.py index e8d2610..adabdfe 100644 --- a/tests/unit/test_consistency_helpers.py +++ b/tests/unit/test_consistency_helpers.py @@ -68,6 +68,26 @@ def test_rejects_non_negative_integers(self, bad: object) -> None: with pytest.raises(ValueError, match="at_timestamp must be a non-negative integer"): _make_read_concern(None, None, bad) # type: ignore[arg-type] + def test_defaults_the_level_to_snapshot(self) -> None: + """A pinned read is a snapshot read, and the server enforces that. + + Sending a timestamp with the level left UNSPECIFIED gets the request + refused with FAILED_PRECONDITION, so the documented time-travel call + could not work as written. + """ + rc = _make_read_concern(None, None, 42) + assert rc.level == pb.READ_CONCERN_LEVEL_SNAPSHOT + + def test_keeps_an_explicit_snapshot_level(self) -> None: + rc = _make_read_concern("snapshot", None, 42) + assert rc.level == pb.READ_CONCERN_LEVEL_SNAPSHOT + + @pytest.mark.parametrize("level", ["local", "majority", "linearizable"]) + def test_rejects_a_level_the_server_will_refuse(self, level: str) -> None: + """Fail here rather than after a round trip to a server that says no.""" + with pytest.raises(ValueError, match="at_timestamp requires read_concern='snapshot'"): + _make_read_concern(level, None, 42) + class TestWriteConcern: @pytest.mark.parametrize( From f9c6372d542137728f60411df3156da65937f091 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 17:59:17 +0300 Subject: [PATCH 12/56] fix(demo): make the install cell survive a fresh environment find_spec raises ModuleNotFoundError rather than returning None when a dotted name's parent package is absent, which is exactly the environment the cell exists for: in a fresh runtime it aborted before installing anything. The session guard in the agent notebook also needed the predicate tied back to its WHERE clause. Searching for the two independently accepted `WITH n, n.session = $sess AS unused WHERE true`, which scopes nothing, and a string literal carrying the same text. Blank the literals, then look for the comparison after the WHERE. Checked against thirteen queries, and 96 KB of query still matches in well under a millisecond. --- demo/notebooks/00_seed_data.ipynb | 15 ++++++- .../01_llama_index_property_graph.ipynb | 15 ++++++- demo/notebooks/02_langchain_graph_chain.ipynb | 15 ++++++- demo/notebooks/03_langgraph_agent.ipynb | 42 ++++++++++++++++--- demo/notebooks/04_whats_new_in_0_5.ipynb | 13 +++++- 5 files changed, 87 insertions(+), 13 deletions(-) diff --git a/demo/notebooks/00_seed_data.ipynb b/demo/notebooks/00_seed_data.ipynb index ff19e47..fbb5627 100644 --- a/demo/notebooks/00_seed_data.ipynb +++ b/demo/notebooks/00_seed_data.ipynb @@ -39,7 +39,18 @@ "# Install only what is missing. A checkout mounted into the image, or an\n", "# editable install, already provides these; pulling them from PyPI there\n", "# would shadow the very code the notebook is meant to exercise.\n", - "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "#\n", + "# find_spec raises rather than returning None when a dotted name's parent\n", + "# package is absent, which is exactly the fresh environment this cell exists\n", + "# for: unguarded, it would abort before installing anything.\n", + "def _missing(module: str) -> bool:\n", + " try:\n", + " return importlib.util.find_spec(module) is None\n", + " except ModuleNotFoundError:\n", + " return True\n", + "\n", + "\n", + "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", "if missing:\n", " subprocess.run(\n", " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", @@ -51,7 +62,7 @@ "\n", "nest_asyncio.apply()\n", "\n", - "print(\"Ready\")" + "print(\"Ready\")\n" ] }, { diff --git a/demo/notebooks/01_llama_index_property_graph.ipynb b/demo/notebooks/01_llama_index_property_graph.ipynb index 3e9393d..2a61df0 100644 --- a/demo/notebooks/01_llama_index_property_graph.ipynb +++ b/demo/notebooks/01_llama_index_property_graph.ipynb @@ -41,7 +41,18 @@ "# Install only what is missing. A checkout mounted into the image, or an\n", "# editable install, already provides these; pulling them from PyPI there\n", "# would shadow the very code the notebook is meant to exercise.\n", - "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "#\n", + "# find_spec raises rather than returning None when a dotted name's parent\n", + "# package is absent, which is exactly the fresh environment this cell exists\n", + "# for: unguarded, it would abort before installing anything.\n", + "def _missing(module: str) -> bool:\n", + " try:\n", + " return importlib.util.find_spec(module) is None\n", + " except ModuleNotFoundError:\n", + " return True\n", + "\n", + "\n", + "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", "if missing:\n", " subprocess.run(\n", " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", @@ -53,7 +64,7 @@ "\n", "nest_asyncio.apply()\n", "\n", - "print(\"SDK installed\")" + "print(\"SDK installed\")\n" ] }, { diff --git a/demo/notebooks/02_langchain_graph_chain.ipynb b/demo/notebooks/02_langchain_graph_chain.ipynb index cadfaec..fa7ae48 100644 --- a/demo/notebooks/02_langchain_graph_chain.ipynb +++ b/demo/notebooks/02_langchain_graph_chain.ipynb @@ -43,7 +43,18 @@ "# Install only what is missing. A checkout mounted into the image, or an\n", "# editable install, already provides these; pulling them from PyPI there\n", "# would shadow the very code the notebook is meant to exercise.\n", - "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "#\n", + "# find_spec raises rather than returning None when a dotted name's parent\n", + "# package is absent, which is exactly the fresh environment this cell exists\n", + "# for: unguarded, it would abort before installing anything.\n", + "def _missing(module: str) -> bool:\n", + " try:\n", + " return importlib.util.find_spec(module) is None\n", + " except ModuleNotFoundError:\n", + " return True\n", + "\n", + "\n", + "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", "if missing:\n", " subprocess.run(\n", " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", @@ -55,7 +66,7 @@ "\n", "nest_asyncio.apply()\n", "\n", - "print(\"SDK installed\")" + "print(\"SDK installed\")\n" ] }, { diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 98cf4bb..c675f85 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -43,7 +43,18 @@ "# Install only what is missing. A checkout mounted into the image, or an\n", "# editable install, already provides these; pulling them from PyPI there\n", "# would shadow the very code the notebook is meant to exercise.\n", - "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "#\n", + "# find_spec raises rather than returning None when a dotted name's parent\n", + "# package is absent, which is exactly the fresh environment this cell exists\n", + "# for: unguarded, it would abort before installing anything.\n", + "def _missing(module: str) -> bool:\n", + " try:\n", + " return importlib.util.find_spec(module) is None\n", + " except ModuleNotFoundError:\n", + " return True\n", + "\n", + "\n", + "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", "if missing:\n", " subprocess.run(\n", " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", @@ -55,7 +66,7 @@ "\n", "nest_asyncio.apply()\n", "\n", - "print(\"SDK installed\")" + "print(\"SDK installed\")\n" ] }, { @@ -151,9 +162,13 @@ "# would pass yet return unscoped rows for `n`. A complete per-alias check would\n", "# require parsing the Cypher AST, which is out of scope for a demo safety guard.\n", "# In production code, use server-side row-level security instead of client regex.\n", - "# Scope guards. Each class below excludes both of its delimiters, and none\n", - "# asks for the closing half, so the matcher never has to backtrack across a\n", - "# long query to fail.\n", + "# Scope guards. Each class excludes both of its delimiters and none asks for\n", + "# the closing half, so the matcher never backtracks across a long query to\n", + "# fail. Order matters as much as presence: the session predicate has to sit\n", + "# inside the WHERE clause, or `WITH n, n.session = $sess AS unused WHERE true`\n", + "# passes while scoping nothing. String literals are blanked first, so a query\n", + "# cannot smuggle the predicate through as text.\n", + "_STRING_LITERAL_RE = re.compile(r\"'[^']*'|\\\"[^\\\"]*\\\"\")\n", "_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n", "_SESSION_EQ_RE = re.compile(r\"\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n", "_SESSION_NODE_SCOPE_RE = re.compile(\n", @@ -162,6 +177,21 @@ ")\n", "\n", "\n", + "def _is_session_scoped(query: str) -> bool:\n", + " \"\"\"Whether the query restricts itself to this session.\n", + "\n", + " A demo-grade guard, not authorization: it checks one node pattern or one\n", + " WHERE predicate, so a Cartesian product like `MATCH (n), (m {session:\n", + " $sess})` still slips through. Production code puts this on the server as\n", + " row-level security rather than in a client regex.\n", + " \"\"\"\n", + " bare = _STRING_LITERAL_RE.sub(\"''\", query)\n", + " where = _WHERE_RE.search(bare)\n", + " if where and _SESSION_EQ_RE.search(bare, where.end()):\n", + " return True\n", + " return bool(_SESSION_NODE_SCOPE_RE.search(bare))\n", + "\n", + "\n", "@tool\n", "def save_fact(subject: str, relation: str, obj: str) -> str:\n", " \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n", @@ -189,7 +219,7 @@ " return \"Only read-only Cypher is allowed in query_facts.\"\n", " # Require $sess in a WHERE clause or node pattern, not just anywhere.\n", " # Accepts both: WHERE n.session = $sess and MATCH (n {session: $sess})\n", - " scoped_by_where = bool(_WHERE_RE.search(q) and _SESSION_EQ_RE.search(q))\n if not (scoped_by_where or _SESSION_NODE_SCOPE_RE.search(q)):\n", + " if not _is_session_scoped(q):\n", " return \"Query must scope reads to the current session with either WHERE .session = $sess or {session: $sess}\"\n", " # Enforce a result cap so agents cannot dump the entire graph.\n", " # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n", diff --git a/demo/notebooks/04_whats_new_in_0_5.ipynb b/demo/notebooks/04_whats_new_in_0_5.ipynb index bc98f92..b0a05ad 100644 --- a/demo/notebooks/04_whats_new_in_0_5.ipynb +++ b/demo/notebooks/04_whats_new_in_0_5.ipynb @@ -49,7 +49,18 @@ "# Install only what is missing. A checkout mounted into the image, or an\n", "# editable install, already provides these; pulling them from PyPI there\n", "# would shadow the very code the notebook is meant to exercise.\n", - "missing = [dist for dist, mod in pkgs if importlib.util.find_spec(mod) is None]\n", + "#\n", + "# find_spec raises rather than returning None when a dotted name's parent\n", + "# package is absent, which is exactly the fresh environment this cell exists\n", + "# for: unguarded, it would abort before installing anything.\n", + "def _missing(module: str) -> bool:\n", + " try:\n", + " return importlib.util.find_spec(module) is None\n", + " except ModuleNotFoundError:\n", + " return True\n", + "\n", + "\n", + "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", "if missing:\n", " subprocess.run(\n", " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", From d7b26ede4f9d3a3248cee9591391c54286e6264c Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 17:59:29 +0300 Subject: [PATCH 13/56] fix(build): generate proto stubs where they are actually missing The stubs are gitignored and no build hook produces them, so an editable install of the mounted checkout had none and the first call into the SDK died on a missing module. Generate them as part of the container install, and check they import rather than trusting that they do. The Makefile reached them through a bare python3, which is not the interpreter uv syncs grpcio-tools into, and passed the include path unquoted so a path with a space in it was split before protoc saw it. The verification that the mounted source is in use was an assert, which disappears under -O. --- Makefile | 7 +++++-- demo/install-sdk.sh | 17 ++++++++++++++++- 2 files changed, 21 insertions(+), 3 deletions(-) diff --git a/Makefile b/Makefile index a261c05..c5bba6b 100644 --- a/Makefile +++ b/Makefile @@ -2,7 +2,10 @@ PROTO_SRC := proto PROTO_OUT := coordinode/coordinode/_proto -PYTHON ?= python3 +# grpcio-tools lives in the synced environment, so both the include-path probe +# below and the generation itself have to run through the same interpreter. +# A bare python3 finds neither. +PYTHON ?= uv run python # Well-known types that ship with grpc_tools. The proto submodule vendors its # own google/protobuf/descriptor.proto so the Rust build works on hosts without @@ -18,7 +21,7 @@ proto: @echo "==> Generating proto stubs..." @mkdir -p $(PROTO_OUT) $(PYTHON) -m grpc_tools.protoc \ - -I$(GRPC_INC) \ + -I"$(GRPC_INC)" \ -I$(PROTO_SRC) \ --python_out=$(PROTO_OUT) \ --grpc_python_out=$(PROTO_OUT) \ diff --git a/demo/install-sdk.sh b/demo/install-sdk.sh index 2a82b4c..3936591 100755 --- a/demo/install-sdk.sh +++ b/demo/install-sdk.sh @@ -14,10 +14,25 @@ set -e # one line rather than wrapping. pip install --no-cache-dir -e /sdk/coordinode -e /sdk/llama-index-coordinode -e /sdk/langchain-coordinode # NOSONAR +# The generated proto stubs are gitignored and no build hook produces them, so +# an editable install of the mounted checkout has none. Every call the notebooks +# make goes through them, so generate them here, once the build dependencies +# from the install above are present. +# PYTHON is overridden because the Makefile defaults to `uv run python`, which +# is right on a developer's machine and absent in this image; grpcio-tools is +# installed into the image's own interpreter. +make -C /sdk proto PYTHON=python + # Fail loudly rather than let the demo quietly exercise a release. +# An assert would vanish under -O and let the demo run against a release while +# claiming to test the mount. python - <<'PY' import coordinode + path = coordinode.__file__ -assert "/sdk/" in path, f"coordinode resolved to {path}, not the mounted source" +if "/sdk/" not in path: + raise RuntimeError(f"coordinode resolved to {path}, not the mounted source") +import coordinode._proto # the stubs generated above must be importable + print(f"coordinode from {path}") PY From 6a6dfd00f122b673b4264f8674482611aa0d8930 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 17:59:29 +0300 Subject: [PATCH 14/56] build: track the server release this checkout is built for Integration tests ran against whatever :latest happened to be, so a green run said nothing about the wire contract in the pinned proto. Pin it, and move the demo stack to the same release, which is the one carrying the path and multi-vector wire types the client now decodes. --- .github/workflows/ci.yml | 6 +++++- demo/README.md | 4 ++-- demo/docker-compose.yml | 2 +- docker-compose.yml | 2 +- 4 files changed, 9 insertions(+), 5 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 091dbff..ffef063 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -104,7 +104,11 @@ jobs: runs-on: ubuntu-latest services: coordinode: - image: ghcr.io/structured-world/coordinode:latest + # Pinned, not latest: the proto submodule pins a server version, and + # testing against whatever happens to be newest means a green run says + # nothing about the wire contract this checkout was built for. Bump it + # together with the submodule. + image: ghcr.io/structured-world/coordinode:0.5.3 ports: - 7080:7080 - 7084:7084 diff --git a/demo/README.md b/demo/README.md index 959b59c..74ace47 100644 --- a/demo/README.md +++ b/demo/README.md @@ -15,10 +15,10 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. > **Note:** First run installs `coordinode-embedded` from source (Rust build, ~5 min). > Subsequent runs use Colab's pip cache. > The embedded Colab install is pinned to a specific commit that bundles coordinode-rs v0.4.1; the Colab notebook links above target `main`. -> The Docker Compose stack below uses the CoordiNode **server** image v0.5.2. Do not +> The Docker Compose stack below uses the CoordiNode **server** image v0.5.3. Do not > pin it below that: 0.5.1 crashes its Raft core when the oplog rolls a segment that > already exists, and a single-node stack never regains leadership afterwards. - +> > **What 0.5 Added** needs a server: write concerns, read concerns and time travel > are distribution and durability features, and the embedded engine has neither Raft > nor replicas. Run it against the Docker Compose stack below. diff --git a/demo/docker-compose.yml b/demo/docker-compose.yml index 751afc2..0a4a162 100644 --- a/demo/docker-compose.yml +++ b/demo/docker-compose.yml @@ -3,7 +3,7 @@ services: # Keep version in sync with root docker-compose.yml. Point # COORDINODE_IMAGE at a locally built tag to try a server build before it # is published. - image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode:0.5.2} + image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode:0.5.3} container_name: demo-coordinode ports: - "127.0.0.1:37080:7080" # gRPC (native API) — localhost-only diff --git a/docker-compose.yml b/docker-compose.yml index 026e894..26faebc 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -7,7 +7,7 @@ version: "3.9" services: coordinode: - image: ghcr.io/structured-world/coordinode:0.5.2 + image: ghcr.io/structured-world/coordinode:0.5.3 # Named for this repository rather than plain `coordinode`: the server # repository runs its own compose stack that claims that name, and a bare # name is global to the daemon. From 4f0f5c4aa09b35b3ff7df3445a3eb72a58ac61a9 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 20:58:18 +0300 Subject: [PATCH 15/56] fix(sdk): keep a multi-vector a multi-vector on re-encode Decoding returned a plain list of lists, which the encoder cannot tell from an array that happens to hold vectors, so reading a multi-vector property and writing it back changed its wire type and failed schema validation. Decode now returns a MultiVector, a list subclass that reads and compares exactly like the nested list it replaces and carries the distinction the encoder needs. Regression tests cover the round trip and confirm an ordinary nested list is still encoded as a list. --- coordinode/coordinode/_types.py | 24 +++++++++++++++++++++++- tests/unit/test_types.py | 24 ++++++++++++++++++++++++ 2 files changed, 47 insertions(+), 1 deletion(-) diff --git a/coordinode/coordinode/_types.py b/coordinode/coordinode/_types.py index 2ec4113..16cbb65 100644 --- a/coordinode/coordinode/_types.py +++ b/coordinode/coordinode/_types.py @@ -11,6 +11,20 @@ PyValue = int | float | str | bool | bytes | list[float] | list[Any] | dict[str, Any] | None +class MultiVector(list): + """Several equal-width vectors describing one item. + + A plain ``list`` of rows, so it reads and indexes like any other sequence + and compares equal to the nested list it looks like. The type exists only + to carry the distinction back to the wire: a value that arrived as a + multi-vector re-encodes as one, while an ordinary list of vectors stays an + ordinary list. Without it a read-modify-write silently changed the property + type, which the schema then rejected. + """ + + __slots__ = () + + def to_property_value(py_val: PyValue) -> Any: """Convert a Python value to a proto PropertyValue.""" from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] @@ -33,6 +47,14 @@ def to_property_value(py_val: PyValue) -> Any: pv.string_value = py_val elif isinstance(py_val, bytes): pv.bytes_value = py_val + elif isinstance(py_val, MultiVector): + from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] + MultiVector as MultiVectorProto, + ) + + pv.multi_vector_value.CopyFrom( + MultiVectorProto(rows=[Vector(values=[float(v) for v in row]) for row in py_val]) + ) elif isinstance(py_val, list | tuple): # Homogeneous float list → Vector; mixed/str list → PropertyList. # bool is a subclass of int, so exclude it explicitly — [True, False] must @@ -82,7 +104,7 @@ def from_property_value(pv: Any) -> PyValue: # retrieval models produce. A plain list of lists is the natural Python # shape; the wire type is what distinguishes it from an array that # happens to hold vectors. - return [list(row.values) for row in pv.multi_vector_value.rows] + return MultiVector(list(row.values) for row in pv.multi_vector_value.rows) elif kind == "path_value": # Relationship properties are not carried in the path model, so a hop # is its type and its endpoints. diff --git a/tests/unit/test_types.py b/tests/unit/test_types.py index 363e13b..677df9b 100644 --- a/tests/unit/test_types.py +++ b/tests/unit/test_types.py @@ -133,3 +133,27 @@ def test_path(self): {"type": "LINK", "source": 8, "target": 9}, ], } + + def test_multi_vector_survives_a_round_trip(self): + """Reading a multi-vector and writing it back keeps its wire type. + + Decoding to a plain list of lists loses the distinction: the encoder + cannot tell it from an array that happens to hold vectors, so a + read-modify-write turned a multi-vector property into a list of + vectors and failed validation against the schema. + """ + original = PropertyValue( + multi_vector_value=MultiVector(rows=[Vector(values=[0.5, 1.5]), Vector(values=[2.5, 3.5])]) + ) + decoded = from_property_value(original) + # Still an ordinary sequence to anyone reading it. + assert decoded == [pytest.approx([0.5, 1.5]), pytest.approx([2.5, 3.5])] + + re_encoded = to_property_value(decoded) + assert re_encoded.WhichOneof("value") == "multi_vector_value", f"re-encoded as {re_encoded.WhichOneof('value')}" + assert len(re_encoded.multi_vector_value.rows) == 2 + + def test_a_plain_nested_list_is_not_a_multi_vector(self): + """Only a value that came back as one re-encodes as one.""" + pv = to_property_value([[0.5, 1.5], [2.5, 3.5]]) + assert pv.WhichOneof("value") == "list_value" From 717797518c8f6a08012597ea1fa6ea0ed1a437fa Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 20:58:26 +0300 Subject: [PATCH 16/56] fix(langchain): expose the schema accessors GraphStore declares GraphCypherQAChain reads graph.get_structured_schema, not the structured_schema property this class defined. The interface names were left to the abstract base, where they evaluate to None, so building the chain died in construct_schema on "'NoneType' object has no attribute 'get'" before it ever reached the model. The failure never surfaced in tests because the chain section only runs with an API key present. Both interface names are now properties delegating to the existing ones, with regression tests over the exact call that raised. --- .../langchain_coordinode/graph.py | 17 ++++++++++- tests/unit/test_langchain_graph.py | 29 +++++++++++++++++++ 2 files changed, 45 insertions(+), 1 deletion(-) diff --git a/langchain-coordinode/langchain_coordinode/graph.py b/langchain-coordinode/langchain_coordinode/graph.py index d966f5e..765c6f1 100644 --- a/langchain-coordinode/langchain_coordinode/graph.py +++ b/langchain-coordinode/langchain_coordinode/graph.py @@ -25,7 +25,7 @@ class CoordinodeGraph(GraphStore): Example:: from langchain_coordinode import CoordinodeGraph - from langchain.chains import GraphCypherQAChain + from langchain_classic.chains import GraphCypherQAChain from langchain_openai import ChatOpenAI graph = CoordinodeGraph("localhost:7080") @@ -82,6 +82,21 @@ def structured_schema(self) -> dict[str, Any]: self.refresh_schema() return self._structured_schema or {} + # ``schema`` / ``structured_schema`` read naturally; ``get_schema`` / + # ``get_structured_schema`` are the names GraphStore declares and the ones + # GraphCypherQAChain actually reads. They are properties, not methods, on + # that interface. Leaving them to the abstract base made them evaluate to + # None and took the chain down inside construct_schema. + @property + def get_schema(self) -> str: + """Schema string, under the name the GraphStore interface declares.""" + return self.schema + + @property + def get_structured_schema(self) -> dict[str, Any]: + """Structured schema, under the name the GraphStore interface declares.""" + return self.structured_schema + def refresh_schema(self) -> None: """Fetch current schema from CoordiNode. diff --git a/tests/unit/test_langchain_graph.py b/tests/unit/test_langchain_graph.py index 7dcc101..81fd061 100644 --- a/tests/unit/test_langchain_graph.py +++ b/tests/unit/test_langchain_graph.py @@ -180,3 +180,32 @@ def test_returns_empty_when_text_search_raises(self) -> None: out = graph.keyword_search("query") assert out == [] + + +# ── Tests: GraphStore schema contract ───────────────────────────────────────── + + +class TestGraphStoreSchemaContract: + """The two accessors LangChain itself reads, not the ones we named. + + ``GraphCypherQAChain.from_llm`` builds its prompt from + ``graph.get_structured_schema``. Implementing only ``schema`` and + ``structured_schema`` left those inherited from the abstract base, where + they evaluate to None, and the chain died in ``construct_schema`` on + ``'NoneType' object has no attribute 'get'`` before reaching the LLM. + """ + + def test_get_schema_matches_schema(self) -> None: + graph = CoordinodeGraph(client=_ClientWithoutTextSearch()) + + assert graph.get_schema == graph.schema + + def test_get_structured_schema_is_a_mapping(self) -> None: + graph = CoordinodeGraph(client=_ClientWithoutTextSearch()) + + structured = graph.get_structured_schema + + assert isinstance(structured, dict) + assert structured == graph.structured_schema + # The exact call that used to raise. + assert isinstance(structured.get("node_props", {}), dict) From b45e51f4c1f5eaf0f7d0d83d192659595891888b Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 20:58:36 +0300 Subject: [PATCH 17/56] build(deps): raise floors to what the shipped stubs require The wheel carries generated stubs that refuse to import against an older runtime: the pb2 modules validate a 7.35.1 protobuf runtime and the grpc stubs check their own generated version. A resolver honouring the old grpcio>=1.60 / protobuf>=4.25 floors produced an environment that installed cleanly and then failed on first import. Also declares the three workspace members in the dev group. Listing them under [tool.uv.workspace] alone makes them resolvable, not installed, so uv sync left the environment without them and every test importing coordinode failed on a machine that had not installed them by hand. Dev tooling moves to the current majors (langchain 1.x, langgraph 1.x, llama-index-core 0.14, pytest 9, ruff 0.16) and the notebook LLM stack joins the group so a synced checkout runs the demos with no ad-hoc installs. Verified on both a uv sync and a clean pip install. --- coordinode/README.md | 15 +- coordinode/pyproject.toml | 19 +- langchain-coordinode/pyproject.toml | 4 +- llama-index-coordinode/pyproject.toml | 4 +- pyproject.toml | 24 +- uv.lock | 3474 +++++++++++++++---------- 6 files changed, 2133 insertions(+), 1407 deletions(-) diff --git a/coordinode/README.md b/coordinode/README.md index 575319f..1897bec 100644 --- a/coordinode/README.md +++ b/coordinode/README.md @@ -55,12 +55,14 @@ with CoordinodeClient("localhost:7080") as db: import asyncio from coordinode import AsyncCoordinodeClient + async def main(): async with AsyncCoordinodeClient("localhost:7080") as db: rows = await db.cypher("MATCH (n:Concept) RETURN n.name AS name LIMIT 5") for row in rows: print(row["name"]) + asyncio.run(main()) ``` @@ -128,7 +130,8 @@ db.create_text_index("idx_doc_body", "Doc", "body") # Reciprocal Rank Fusion of text + vector. Projecting `d AS doc_id` returns the # internal node id (an integer) — fetch properties explicitly when needed. -rows = db.cypher(""" +rows = db.cypher( + """ MATCH (d:Doc) WHERE text_match(d, $q) OR d.embedding IS NOT NULL RETURN d AS doc_id, @@ -138,7 +141,9 @@ rows = db.cypher(""" vec_score(d.embedding, $vec) ) AS score ORDER BY score DESC LIMIT 10 -""", params={"q": "graph neural network", "vec": [0.1] * 384}) +""", + params={"q": "graph neural network", "vec": [0.1] * 384}, +) # Full node properties: db.get_node(rows[0]["doc_id"]). ``` @@ -152,10 +157,8 @@ Python side. Promote a nested property to a graph node (and back): ```python -db.cypher("MATCH (a:Article {id: $id}) DETACH DOCUMENT a.body AS (d:Body)", - params={"id": 1}) -db.cypher("MATCH (a:Article {id: $id})-[:HAS_BODY]->(d:Body) " - "ATTACH DOCUMENT d INTO a.body", params={"id": 1}) +db.cypher("MATCH (a:Article {id: $id}) DETACH DOCUMENT a.body AS (d:Body)", params={"id": 1}) +db.cypher("MATCH (a:Article {id: $id})-[:HAS_BODY]->(d:Body) ATTACH DOCUMENT d INTO a.body", params={"id": 1}) ``` ## Consistency Controls diff --git a/coordinode/pyproject.toml b/coordinode/pyproject.toml index 781a8c2..7e5d295 100644 --- a/coordinode/pyproject.toml +++ b/coordinode/pyproject.toml @@ -22,18 +22,23 @@ classifiers = [ "Topic :: Database", "Topic :: Scientific/Engineering :: Artificial Intelligence", ] +# Floors track the generated stubs shipped in the wheel, which are not +# backward compatible with older runtimes: the pb2 modules call +# ValidateProtobufRuntimeVersion(7.35.1) and the grpc stubs refuse to import +# below their own generated version. A lower floor here resolves happily and +# then fails at first import. dependencies = [ - "grpcio>=1.60", - "protobuf>=4.25", - "googleapis-common-protos>=1.62", + "grpcio>=1.83.1", + "protobuf>=7.35.1", + "googleapis-common-protos>=1.74.0", ] [project.optional-dependencies] dev = [ - "grpcio-tools>=1.60", - "pytest>=8", - "pytest-asyncio>=0.23", - "ruff>=0.4", + "grpcio-tools>=1.83.1", + "pytest>=9", + "pytest-asyncio>=1.4", + "ruff>=0.16", ] [project.urls] diff --git a/langchain-coordinode/pyproject.toml b/langchain-coordinode/pyproject.toml index 4946407..dee2148 100644 --- a/langchain-coordinode/pyproject.toml +++ b/langchain-coordinode/pyproject.toml @@ -22,8 +22,8 @@ classifiers = [ "Topic :: Scientific/Engineering :: Artificial Intelligence", ] dependencies = [ - "coordinode>=0.6.0", - "langchain-community>=0.2.0", + "coordinode>=1.0.6", + "langchain-community>=0.4", ] [project.urls] diff --git a/llama-index-coordinode/pyproject.toml b/llama-index-coordinode/pyproject.toml index 92069a9..36a000d 100644 --- a/llama-index-coordinode/pyproject.toml +++ b/llama-index-coordinode/pyproject.toml @@ -22,8 +22,8 @@ classifiers = [ "Topic :: Scientific/Engineering :: Artificial Intelligence", ] dependencies = [ - "coordinode>=0.6.0", - "llama-index-core>=0.10.0", + "coordinode>=1.0.6", + "llama-index-core>=0.14", ] [project.urls] diff --git a/pyproject.toml b/pyproject.toml index e3bb123..1d85b14 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,19 +23,31 @@ members = [ [tool.uv.sources] # Local editable installs for workspace members coordinode = { workspace = true } +langchain-coordinode = { workspace = true } +llama-index-graph-stores-coordinode = { workspace = true } [dependency-groups] +# The three workspace members are listed here on purpose. Declaring them in +# [tool.uv.workspace] alone makes them resolvable, not installed, so `uv sync` +# left the environment without them and every test importing coordinode failed +# on a machine that had not installed them by hand at some point. dev = [ + "coordinode", + "langchain-coordinode", + "llama-index-graph-stores-coordinode", "build>=1.2", - "grpcio-tools>=1.60", + "grpcio-tools>=1.83.1", "ipykernel>=7.3.0", + "langchain>=1.0", "langchain-community>=0.3", "langchain-core>=1.3.3", - "llama-index-core>=0.12", + "langchain-openai>=1.0", + "langgraph>=1.0", + "llama-index-core>=0.14", "nbconvert>=7.17.1", "nest-asyncio>=1.6.0", - "pytest>=8", - "pytest-asyncio>=0.23", - "pytest-timeout>=2", - "ruff>=0.4", + "pytest>=9", + "pytest-asyncio>=1.4", + "pytest-timeout>=2.4", + "ruff>=0.16", ] diff --git a/uv.lock b/uv.lock index b6441f4..98fb435 100644 --- a/uv.lock +++ b/uv.lock @@ -3,7 +3,8 @@ revision = 3 requires-python = ">=3.11" resolution-markers = [ "python_full_version >= 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The include probe was also an immediate assignment, so every invocation, `make clean` included, shelled out to uv before reading the target. Generation now runs under plain python3 on that path and the probe is deferred to the recipe that needs it. The install check in the demo image imported coordinode._proto, an empty __init__.py that imports fine whether or not generation produced any messages. It now builds a real generated request instead. --- Makefile | 10 +++++++--- demo/install-sdk.sh | 6 +++++- 2 files changed, 12 insertions(+), 4 deletions(-) diff --git a/Makefile b/Makefile index c5bba6b..e90f213 100644 --- a/Makefile +++ b/Makefile @@ -14,7 +14,9 @@ PYTHON ?= uv run python # doesn't contain google.protobuf.FeatureSet". Searching here first keeps # descriptor.proto on protoc's own copy while google/api/* still resolves from # the submodule, which is the only place it exists. -GRPC_INC := $(shell $(PYTHON) -c "import grpc_tools, os; print(os.path.join(os.path.dirname(grpc_tools.__file__), '_proto'))") +# Deferred, not `:=`: an immediate assignment would shell out to $(PYTHON) on +# every make invocation, including `make clean` on a machine with no uv. +GRPC_INC = $(shell $(PYTHON) -c "import grpc_tools, os; print(os.path.join(os.path.dirname(grpc_tools.__file__), '_proto'))") # Generate gRPC stubs from proto submodule into coordinode/_proto/ proto: @@ -47,12 +49,14 @@ install: uv sync $(MAKE) proto -# Install using pip (alternative — works without uv) +# Install using pip (alternative that works without uv). +# proto runs through plain python3 here: the whole point of this target is to +# work on a machine that has no uv, and the default PYTHON goes through it. install-pip: pip install -e "coordinode[dev]" pip install -e langchain-coordinode/ pip install -e llama-index-coordinode/ - $(MAKE) proto + $(MAKE) proto PYTHON=python3 test: proto-check test-unit diff --git a/demo/install-sdk.sh b/demo/install-sdk.sh index 3936591..a1dcb66 100755 --- a/demo/install-sdk.sh +++ b/demo/install-sdk.sh @@ -32,7 +32,11 @@ import coordinode path = coordinode.__file__ if "/sdk/" not in path: raise RuntimeError(f"coordinode resolved to {path}, not the mounted source") -import coordinode._proto # the stubs generated above must be importable +# A real generated message, not the package: `coordinode._proto` is an empty +# __init__.py that imports fine even when generation produced nothing. +from coordinode._proto.coordinode.v1.query.cypher_pb2 import ExecuteCypherRequest + +ExecuteCypherRequest(query="RETURN 1") print(f"coordinode from {path}") PY From 09cecaa3dc03f9f8cfe3adde2585a620ee17a293 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 20:58:54 +0300 Subject: [PATCH 19/56] build: pin the server image by digest and track v0.5.3 A tag can be re-pushed, so `:0.5.3` alone does not name one fixed server and a green integration run says nothing about which build produced it. CI and the demo compose file now name the digest, and the submodule moves to the release the client is tested against. --- .github/workflows/ci.yml | 10 +++++----- coordinode-rs | 2 +- demo/docker-compose.yml | 4 +++- 3 files changed, 9 insertions(+), 7 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ffef063..7f6754c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -104,11 +104,11 @@ jobs: runs-on: ubuntu-latest services: coordinode: - # Pinned, not latest: the proto submodule pins a server version, and - # testing against whatever happens to be newest means a green run says - # nothing about the wire contract this checkout was built for. Bump it - # together with the submodule. - image: ghcr.io/structured-world/coordinode:0.5.3 + # Pinned by digest, not by tag: the proto submodule pins a server + # version, and a tag can be re-pushed, so `:0.5.3` alone does not name + # one fixed server. The digest below is 0.5.3; bump both together with + # the submodule. + image: ghcr.io/structured-world/coordinode@sha256:c79a2b6448cd76e9af4a772a324e586a739fb8d241d899b252206a0bde593a11 ports: - 7080:7080 - 7084:7084 diff --git a/coordinode-rs b/coordinode-rs index be08af3..9200dbe 160000 --- a/coordinode-rs +++ b/coordinode-rs @@ -1 +1 @@ -Subproject commit be08af3e62cb77415c49c7cc6b3c843d52e7faa6 +Subproject commit 9200dbebca2e3664c4fcb05568caba6209f2acd0 diff --git a/demo/docker-compose.yml b/demo/docker-compose.yml index 0a4a162..4444b30 100644 --- a/demo/docker-compose.yml +++ b/demo/docker-compose.yml @@ -3,7 +3,9 @@ services: # Keep version in sync with root docker-compose.yml. Point # COORDINODE_IMAGE at a locally built tag to try a server build before it # is published. - image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode:0.5.3} + # Digest-pinned so a re-pushed tag cannot change the demo underneath + # you; this one is 0.5.3. Override COORDINODE_IMAGE to try another. + image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode@sha256:c79a2b6448cd76e9af4a772a324e586a739fb8d241d899b252206a0bde593a11} container_name: demo-coordinode ports: - "127.0.0.1:37080:7080" # gRPC (native API) — localhost-only From b299982e66fcbc0e830001b5aa174345617033f6 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 20:59:07 +0300 Subject: [PATCH 20/56] fix(demo): run the notebooks on current langchain and a real server The bootstrap cell installed missing packages with `python -m pip`, which a uv-managed venv does not have, so notebooks 02 and 03 aborted before their first query on a synced checkout. It now falls back to uv aimed at the same interpreter. The QA chain imported GraphCypherQAChain from langchain.chains, a module langchain 1.x no longer ships; it lives in langchain-classic now. That cell only runs with an API key, so the break was invisible locally. Two comments claimed limitations that are not the real ones. Relationship types come back NULL from an aggregate on the pinned server, and a path predicate over nodes(p) matches nothing because the list holds bare ids, so both notes now say what actually happens. The llama-index support table no longer claims vector queries return empty; they return ranked results against a running server. The session-scope guard in the agent notebook accepted two queries that read from every session: one putting the comparison in RETURN rather than WHERE, and one hiding the whole predicate in a backtick-quoted alias. The guard now blanks quoted spans first and bounds its search to the WHERE clause it claims to check. Notebook 04 gets cell ids so nbformat validates it without warnings. All five notebooks were executed against a live v0.5.3 server. --- demo/notebooks/00_seed_data.ipynb | 5 +- demo/notebooks/02_langchain_graph_chain.ipynb | 32 +++++++-- demo/notebooks/03_langgraph_agent.ipynb | 68 +++++++++++++------ demo/notebooks/04_whats_new_in_0_5.ipynb | 57 ++++++++++------ langchain-coordinode/README.md | 2 +- llama-index-coordinode/README.md | 2 +- 6 files changed, 117 insertions(+), 49 deletions(-) diff --git a/demo/notebooks/00_seed_data.ipynb b/demo/notebooks/00_seed_data.ipynb index fbb5627..818cba9 100644 --- a/demo/notebooks/00_seed_data.ipynb +++ b/demo/notebooks/00_seed_data.ipynb @@ -351,7 +351,10 @@ " )\n", " print(f\" {label:15s} {rows[0]['count']}\")\n", "\n", - "# Fetch all types and count in Python (avoids aggregation limitations)\n", + "# Counted in Python on purpose. `RETURN type(r) AS rel, count(*) AS n`\n", + "# groups correctly but hands back a NULL key on the server this demo\n", + "# pins, and moving type(r) into a preceding WITH does not help. Pulling\n", + "# the types and tallying them here keeps the output honest.\n", "rels = client.cypher(\n", " \"MATCH (a {demo: true, demo_tag: $tag})-[r]->(b {demo: true, demo_tag: $tag}) RETURN type(r) AS rel\",\n", " params={\"tag\": DEMO_TAG},\n", diff --git a/demo/notebooks/02_langchain_graph_chain.ipynb b/demo/notebooks/02_langchain_graph_chain.ipynb index fa7ae48..97cb6a4 100644 --- a/demo/notebooks/02_langchain_graph_chain.ipynb +++ b/demo/notebooks/02_langchain_graph_chain.ipynb @@ -23,7 +23,7 @@ "metadata": {}, "outputs": [], "source": [ - "import importlib.util, os, subprocess, sys\n", + "import importlib.util, os, shutil, subprocess, sys\n", "\n", "IN_COLAB = \"google.colab\" in sys.modules\n", "\n", @@ -32,6 +32,7 @@ " (\"coordinode\", \"coordinode\"),\n", " (\"langchain-coordinode\", \"langchain_coordinode\"),\n", " (\"langchain\", \"langchain\"),\n", + " (\"langchain-classic\", \"langchain_classic\"),\n", " (\"langchain-community\", \"langchain_community\"),\n", " (\"langchain-openai\", \"langchain_openai\"),\n", " (\"nest_asyncio\", \"nest_asyncio\"),\n", @@ -54,13 +55,28 @@ " return True\n", "\n", "\n", + "def _install(dists: list[str]) -> None:\n", + " \"\"\"Install into this interpreter with whatever installer it has.\n", + "\n", + " Colab ships pip. A uv-managed venv deliberately does not, and there\n", + " `python -m pip` dies with \"No module named pip\" before the notebook\n", + " reaches its first query, so fall back to uv targeting this same\n", + " interpreter rather than uv's own default environment.\n", + " \"\"\"\n", + " if not _missing(\"pip\"):\n", + " cmd = [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *dists]\n", + " elif shutil.which(\"uv\"):\n", + " cmd = [\"uv\", \"pip\", \"install\", \"-q\", \"--python\", sys.executable, *dists]\n", + " else:\n", + " raise RuntimeError(\n", + " f\"Neither pip nor uv is available to install: {', '.join(dists)}\"\n", + " )\n", + " subprocess.run(cmd, check=True, timeout=300)\n", + "\n", + "\n", "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", "if missing:\n", - " subprocess.run(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", - " check=True,\n", - " timeout=300,\n", - " )\n", + " _install(missing)\n", "\n", "import nest_asyncio\n", "\n", @@ -332,7 +348,9 @@ " 'Skipping: OPENAI_API_KEY is not set. Set it via os.environ[\"OPENAI_API_KEY\"] = \"sk-...\" and re-run this cell.'\n", " )\n", "else:\n", - " from langchain.chains import GraphCypherQAChain\n", + " # langchain 1.x moved the legacy chains out of the `langchain`\n", + " # namespace; GraphCypherQAChain now lives in langchain-classic.\n", + " from langchain_classic.chains import GraphCypherQAChain\n", " from langchain_openai import ChatOpenAI\n", "\n", " chain = GraphCypherQAChain.from_llm(\n", diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index c675f85..80dd0ee 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -23,7 +23,7 @@ "metadata": {}, "outputs": [], "source": [ - "import importlib.util, os, subprocess, sys\n", + "import importlib.util, os, shutil, subprocess, sys\n", "\n", "IN_COLAB = \"google.colab\" in sys.modules\n", "\n", @@ -54,13 +54,28 @@ " return True\n", "\n", "\n", + "def _install(dists: list[str]) -> None:\n", + " \"\"\"Install into this interpreter with whatever installer it has.\n", + "\n", + " Colab ships pip. A uv-managed venv deliberately does not, and there\n", + " `python -m pip` dies with \"No module named pip\" before the notebook\n", + " reaches its first query, so fall back to uv targeting this same\n", + " interpreter rather than uv's own default environment.\n", + " \"\"\"\n", + " if not _missing(\"pip\"):\n", + " cmd = [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *dists]\n", + " elif shutil.which(\"uv\"):\n", + " cmd = [\"uv\", \"pip\", \"install\", \"-q\", \"--python\", sys.executable, *dists]\n", + " else:\n", + " raise RuntimeError(\n", + " f\"Neither pip nor uv is available to install: {', '.join(dists)}\"\n", + " )\n", + " subprocess.run(cmd, check=True, timeout=300)\n", + "\n", + "\n", "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", "if missing:\n", - " subprocess.run(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", - " check=True,\n", - " timeout=300,\n", - " )\n", + " _install(missing)\n", "\n", "import nest_asyncio\n", "\n", @@ -162,14 +177,24 @@ "# would pass yet return unscoped rows for `n`. A complete per-alias check would\n", "# require parsing the Cypher AST, which is out of scope for a demo safety guard.\n", "# In production code, use server-side row-level security instead of client regex.\n", - "# Scope guards. Each class excludes both of its delimiters and none asks for\n", - "# the closing half, so the matcher never backtracks across a long query to\n", - "# fail. Order matters as much as presence: the session predicate has to sit\n", - "# inside the WHERE clause, or `WITH n, n.session = $sess AS unused WHERE true`\n", - "# passes while scoping nothing. String literals are blanked first, so a query\n", - "# cannot smuggle the predicate through as text.\n", - "_STRING_LITERAL_RE = re.compile(r\"'[^']*'|\\\"[^\\\"]*\\\"\")\n", + "# Scope guards. Presence is not enough: the session predicate has to sit\n", + "# inside the WHERE clause it claims to restrict, and it must be real syntax\n", + "# rather than text. Three ways a query slipped past an earlier version:\n", + "#\n", + "# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n", + "# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n", + "# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n", + "#\n", + "# So quoted spans are blanked first, and the search is bounded to the WHERE\n", + "# clause: from the keyword to whichever clause opens next. Every pattern below\n", + "# excludes its own delimiters, so none backtracks across a long query.\n", + "_QUOTED_RE = re.compile(r\"'[^']*'|\\\"[^\\\"]*\\\"|`[^`]*`\")\n", "_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n", + "_CLAUSE_START_RE = re.compile(\n", + " r\"\\b(RETURN|WITH|MATCH|OPTIONAL|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL|MERGE\"\n", + " r\"|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n", + " re.IGNORECASE,\n", + ")\n", "_SESSION_EQ_RE = re.compile(r\"\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n", "_SESSION_NODE_SCOPE_RE = re.compile(\n", " r\"\\([^()]*\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\",\n", @@ -185,10 +210,12 @@ " $sess})` still slips through. Production code puts this on the server as\n", " row-level security rather than in a client regex.\n", " \"\"\"\n", - " bare = _STRING_LITERAL_RE.sub(\"''\", query)\n", - " where = _WHERE_RE.search(bare)\n", - " if where and _SESSION_EQ_RE.search(bare, where.end()):\n", - " return True\n", + " bare = _QUOTED_RE.sub(\"''\", query)\n", + " for where in _WHERE_RE.finditer(bare):\n", + " nxt = _CLAUSE_START_RE.search(bare, where.end())\n", + " clause = bare[where.end(): nxt.start() if nxt else len(bare)]\n", + " if _SESSION_EQ_RE.search(clause):\n", + " return True\n", " return bool(_SESSION_NODE_SCOPE_RE.search(bare))\n", "\n", "\n", @@ -249,9 +276,10 @@ "def find_related(entity_name: str, depth: int = 1) -> str:\n", " \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n", " safe_depth = max(1, min(int(depth), 3))\n", - " # Note: session constraint is on both endpoints (n, m). Constraining\n", - " # intermediate nodes via path variables (MATCH p=..., WHERE ALL(x IN nodes(p)...))\n", - " # is not yet supported by CoordiNode — planned for a future release.\n", + " # Note: session constraint is on both endpoints (n, m). The obvious\n", + " # tightening, MATCH p=... WHERE ALL(x IN nodes(p) WHERE x.session = $sess),\n", + " # matches nothing on the pinned server: nodes(p) yields bare ids, so\n", + " # x.session is NULL for every element and the predicate is never true.\n", " # In practice, session isolation holds because all nodes are MERGE'd with\n", " # their session scope, so cross-session paths cannot form.\n", " rows = client.cypher(\n", diff --git a/demo/notebooks/04_whats_new_in_0_5.ipynb b/demo/notebooks/04_whats_new_in_0_5.ipynb index b0a05ad..ceae81c 100644 --- a/demo/notebooks/04_whats_new_in_0_5.ipynb +++ b/demo/notebooks/04_whats_new_in_0_5.ipynb @@ -23,14 +23,16 @@ "> exist on the client that talks to a CoordiNode server. Set `COORDINODE_ADDR`\n", "> before running. The embedded engine has no Raft and no replicas, so the\n", "> cells below stop with an explanation rather than pretending.\n" - ] + ], + "id": "cell-00-ccfb99" }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Install dependencies\n" - ] + ], + "id": "cell-01-dd251c" }, { "cell_type": "code", @@ -73,7 +75,8 @@ "nest_asyncio.apply()\n", "\n", "print(\"Ready\")\n" - ] + ], + "id": "cell-02-54b3dc" }, { "cell_type": "markdown", @@ -83,7 +86,8 @@ "\n", "Every cell below guards on `client`, so running the notebook without a server\n", "produces one explanation instead of a cascade of failures.\n" - ] + ], + "id": "cell-03-369108" }, { "cell_type": "code", @@ -115,7 +119,8 @@ "# what was added and nothing a sibling notebook left behind.\n", "DEMO_TAG = f\"whats_new_{uuid.uuid4().hex[:8]}\"\n", "print(f\"DEMO_TAG: {DEMO_TAG}\")\n" - ] + ], + "id": "cell-04-340937" }, { "cell_type": "markdown", @@ -127,7 +132,8 @@ "`create_node` costs a round trip each and, more importantly, can leave half\n", "the batch committed if the process dies midway; the batch either lands\n", "completely or not at all.\n" - ] + ], + "id": "cell-05-48ec7b" }, { "cell_type": "code", @@ -150,7 +156,8 @@ " print(f\"Created {len(created)} nodes in one write\")\n", " for n in created[:3]:\n", " print(f\" {n.properties['name']:<8} id={n.id} element_id={n.element_id}\")\n" - ] + ], + "id": "cell-06-cd5b2e" }, { "cell_type": "markdown", @@ -164,7 +171,8 @@ "later. On an edge it names the two endpoints in canonical order, because an\n", "edge here is a typed property bag between two nodes rather than an entity with\n", "its own identity.\n" - ] + ], + "id": "cell-07-30a3c3" }, { "cell_type": "code", @@ -181,7 +189,8 @@ " # The handle survives a re-read: fetch the node again and compare.\n", " again = client.get_node(ada.id)\n", " print(f\"re-read matches: {again.element_id == ada.element_id}\")\n" - ] + ], + "id": "cell-08-539b00" }, { "cell_type": "markdown", @@ -192,7 +201,8 @@ "Every label and edge type carries a revision that moves when its shape\n", "changes. A client that caches a schema compares revisions instead of\n", "re-fetching and re-parsing the whole thing.\n" - ] + ], + "id": "cell-09-b06215" }, { "cell_type": "code", @@ -208,7 +218,8 @@ " for et in client.get_edge_types():\n", " if et.name == \"PAIRS_WITH\":\n", " print(f\"PAIRS_WITH schema_revision: {et.schema_revision}\")\n" - ] + ], + "id": "cell-10-89d6af" }, { "cell_type": "markdown", @@ -230,7 +241,8 @@ "`memory` and `cache` acknowledge before the write reaches Raft, so a leader\n", "crash before the background drain loses them. They are for data you can\n", "afford to lose, not for a speed-up on data you cannot.\n" - ] + ], + "id": "cell-11-3dcc1b" }, { "cell_type": "code", @@ -248,7 +260,8 @@ " )\n", " elapsed_ms = (time.perf_counter() - started) * 1000\n", " print(f\" {concern:<9} acknowledged in {elapsed_ms:6.2f} ms\")\n" - ] + ], + "id": "cell-12-a0f9c5" }, { "cell_type": "markdown", @@ -260,7 +273,8 @@ "node may answer. On the single-node demo stack every combination returns the\n", "same rows, which is the point: the same code runs unchanged against a cluster,\n", "where the choice starts to matter.\n" - ] + ], + "id": "cell-13-b1efd6" }, { "cell_type": "code", @@ -283,7 +297,8 @@ " read_preference=\"primary_preferred\",\n", " )\n", " print(f\" read_preference=primary_preferred -> {rows[0]['n']} rows\")\n" - ] + ], + "id": "cell-14-4b5176" }, { "cell_type": "markdown", @@ -304,7 +319,8 @@ "The timestamp also has to fall inside the MVCC retention window. Ask for\n", "something older than the server still keeps and it answers `UNAVAILABLE` rather\n", "than quietly returning the oldest thing it has.\n" - ] + ], + "id": "cell-15-24621f" }, { "cell_type": "code", @@ -347,14 +363,16 @@ " print(f\" at the mark : {past}\")\n", " assert \"after\" not in past, \"the later write must be invisible in the past\"\n", " print(\" the write made after the mark is invisible there\")\n" - ] + ], + "id": "cell-16-e958bf" }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Clean up\n" - ] + ], + "id": "cell-17-b3ad7b" }, { "cell_type": "code", @@ -370,7 +388,8 @@ " )\n", " client.close()\n", " print(f\"Removed everything tagged {DEMO_TAG}\")\n" - ] + ], + "id": "cell-18-d9e318" } ], "metadata": { diff --git a/langchain-coordinode/README.md b/langchain-coordinode/README.md index ef65e1e..fd9a94d 100644 --- a/langchain-coordinode/README.md +++ b/langchain-coordinode/README.md @@ -28,7 +28,7 @@ uv add langchain-coordinode ```python from langchain_coordinode import CoordinodeGraph -from langchain.chains import GraphCypherQAChain +from langchain_classic.chains import GraphCypherQAChain from langchain_openai import ChatOpenAI # Connect to CoordiNode diff --git a/llama-index-coordinode/README.md b/llama-index-coordinode/README.md index ef30ba2..1e23a51 100644 --- a/llama-index-coordinode/README.md +++ b/llama-index-coordinode/README.md @@ -159,7 +159,7 @@ store = CoordinodePropertyGraphStore("localhost:7080", timeout=60.0) | Relationship map traversal | ✅ | | Schema inspection | ✅ | | Direct Cypher (`structured_query`) | ✅ | -| Vector similarity queries | ✅ (returns empty until HNSW index wiring — v0.4) | +| Vector similarity queries | ✅ (server-side HNSW; falls back to empty when the injected client has no `vector_search`) | | Async support | via `AsyncCoordinodeClient` | ## Related Packages From fb66a61b47c4e23964699cfd35b355a9c2d7c41e Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 21:01:33 +0300 Subject: [PATCH 21/56] fix(demo): say which notebook needs a server and check both time views The Colab table sat under a "no setup required" heading while the 0.5 notebook stops without COORDINODE_ADDR. The table now carries a column saying what each notebook needs. The time-travel check asserted only that the later write is absent from the past view, which is also true when that read comes back empty: a snapshot returning nothing looked identical to a snapshot correctly hiding one node. It now requires the earlier era in both views and the later one only in the current view, and raises with the offending rows. --- demo/README.md | 31 +++++++++++++----------- demo/notebooks/04_whats_new_in_0_5.ipynb | 17 +++++++++++-- 2 files changed, 32 insertions(+), 16 deletions(-) diff --git a/demo/README.md b/demo/README.md index 74ace47..3158ca5 100644 --- a/demo/README.md +++ b/demo/README.md @@ -2,26 +2,29 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. -## Open in Google Colab (no setup required) +## Open in Google Colab -| Notebook | What it shows | -|----------|---------------| -| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/00_seed_data.ipynb) **Seed Data** | Build a tech-industry knowledge graph (~35 relationships) | -| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/01_llama_index_property_graph.ipynb) **LlamaIndex** | `CoordinodePropertyGraphStore`: upsert, triplets, structured query | -| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/02_langchain_graph_chain.ipynb) **LangChain** | `CoordinodeGraph`: add_graph_documents, schema, GraphCypherQAChain | -| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb) **LangGraph** | Agent with CoordiNode as graph memory — save/query/traverse | -| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/04_whats_new_in_0_5.ipynb) **What 0.5 Added** | Batch insert, `element_id`, schema revision, write/read concerns, time travel | +| Notebook | What it shows | Needs | +|----------|---------------|-------| +| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/00_seed_data.ipynb) **Seed Data** | Build a tech-industry knowledge graph (~35 relationships) | nothing | +| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/01_llama_index_property_graph.ipynb) **LlamaIndex** | `CoordinodePropertyGraphStore`: upsert, triplets, structured query | nothing | +| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/02_langchain_graph_chain.ipynb) **LangChain** | `CoordinodeGraph`: add_graph_documents, schema, GraphCypherQAChain | nothing | +| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb) **LangGraph** | Agent with CoordiNode as graph memory (save/query/traverse) | nothing | +| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/04_whats_new_in_0_5.ipynb) **What 0.5 Added** | Batch insert, `element_id`, schema revision, write/read concerns, time travel | a server (`COORDINODE_ADDR`) | > **Note:** First run installs `coordinode-embedded` from source (Rust build, ~5 min). > Subsequent runs use Colab's pip cache. > The embedded Colab install is pinned to a specific commit that bundles coordinode-rs v0.4.1; the Colab notebook links above target `main`. -> The Docker Compose stack below uses the CoordiNode **server** image v0.5.3. Do not -> pin it below that: 0.5.1 crashes its Raft core when the oplog rolls a segment that -> already exists, and a single-node stack never regains leadership afterwards. +> The Docker Compose stack below pins the CoordiNode **server** image v0.5.3 by +> digest. Do not move it below that: 0.5.1 crashes its Raft core when the oplog +> rolls a segment that already exists, and a single-node stack never regains +> leadership afterwards. > -> **What 0.5 Added** needs a server: write concerns, read concerns and time travel -> are distribution and durability features, and the embedded engine has neither Raft -> nor replicas. Run it against the Docker Compose stack below. +> The first four run in Colab with no setup. **What 0.5 Added** does not: write +> concerns, read concerns and time travel are distribution and durability features, +> and the embedded engine has neither Raft nor replicas, so that notebook stops +> until `COORDINODE_ADDR` points at a server. Run it against the Docker Compose +> stack below. ## Run locally (Docker Compose) diff --git a/demo/notebooks/04_whats_new_in_0_5.ipynb b/demo/notebooks/04_whats_new_in_0_5.ipynb index ceae81c..9fdb323 100644 --- a/demo/notebooks/04_whats_new_in_0_5.ipynb +++ b/demo/notebooks/04_whats_new_in_0_5.ipynb @@ -361,8 +361,21 @@ " ]\n", " print(f\" now : {now}\")\n", " print(f\" at the mark : {past}\")\n", - " assert \"after\" not in past, \"the later write must be invisible in the past\"\n", - " print(\" the write made after the mark is invisible there\")\n" + " # Check both sides. `\"after\" not in past` alone also passes when the\n", + " # past read came back empty, which is the failure this cell exists to\n", + " # catch: a snapshot read that returns nothing looks exactly like a\n", + " # snapshot read that correctly hides one node.\n", + " problems = []\n", + " if \"before\" not in now or \"after\" not in now:\n", + " problems.append(f\"current view should hold both eras, got {now}\")\n", + " if \"before\" not in past:\n", + " problems.append(f\"the earlier write must be visible at the mark, got {past}\")\n", + " if \"after\" in past:\n", + " problems.append(f\"the later write must be invisible at the mark, got {past}\")\n", + " if problems:\n", + " raise RuntimeError(\"time travel returned the wrong view: \"\n", + " + \"; \".join(problems))\n", + " print(\" the mark sees only what existed then\")\n" ], "id": "cell-16-e958bf" }, From 57f3995652f4989963d51ccc8f894bf06b91ee35 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 21:03:16 +0300 Subject: [PATCH 22/56] test(demo): check the session guard against the queries that fooled it The guard is the only thing keeping one agent session out of another's facts, and it is exercised by whatever Cypher the model writes. The notebook now asserts its verdict on eleven queries, among them the three that used to slip past: the predicate placed in RETURN rather than the WHERE it appears to qualify, the same predicate hidden in a backtick-quoted alias, and one sitting in a string literal. Running on every execution means a loosened pattern fails here rather than in front of a user. --- demo/notebooks/03_langgraph_agent.ipynb | 48 +++++++++++++++++++++++++ 1 file changed, 48 insertions(+) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 80dd0ee..4d5f1dd 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -310,6 +310,54 @@ "print(\"Tools:\", [t.name for t in tools])" ] }, + { + "cell_type": "markdown", + "id": "guard-581f55ed", + "metadata": {}, + "source": [ + "### The guard, checked\n", + "\n", + "`query_facts` runs whatever Cypher the model writes, so the scope check is the\n", + "only thing keeping one session out of another's facts. Three queries below read\n", + "every session and have to be refused: the predicate placed in `RETURN` instead\n", + "of `WHERE`, the same predicate hidden inside a backtick-quoted alias, and one\n", + "sitting in a string literal. This runs on every execution, so a loosened regex\n", + "fails here rather than in front of a user.\n" + ] + }, + { + "cell_type": "code", + "id": "guard-6f7de8b1", + "metadata": {}, + "source": [ + "scoped = [\n", + " \"MATCH (n) WHERE n.session = $sess RETURN n\",\n", + " \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n", + " \"MATCH (n {session: $sess}) RETURN n\",\n", + " \"MATCH (a)-[r]->(b {session: $sess}) RETURN a, b\",\n", + " \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n", + "]\n", + "unscoped = [\n", + " \"MATCH (n) RETURN n\",\n", + " \"MATCH (n) WHERE n.session = $other RETURN n\",\n", + " \"MATCH (n {sessionish: $sess}) RETURN n\",\n", + " # The predicate is in RETURN, not in the WHERE it appears to qualify.\n", + " \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n", + " # The whole predicate is an alias, so it is a name and not a filter.\n", + " \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n", + " # A string literal is data; it restricts nothing.\n", + " \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n", + "]\n", + "\n", + "wrong = [q for q in scoped if not _is_session_scoped(q)]\n", + "wrong += [q for q in unscoped if _is_session_scoped(q)]\n", + "if wrong:\n", + " raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\n", + "print(f\"guard agrees on all {len(scoped) + len(unscoped)} queries\")" + ], + "execution_count": null, + "outputs": [] + }, { "cell_type": "markdown", "id": "7", From f34c7c2b265f8f9b4d14d738d7e58a4ee245a392 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 22:09:58 +0300 Subject: [PATCH 23/56] fix(sdk): refuse a causal fence together with a pinned read A fence waits for the log to reach an index; a pin reads a fixed point in the past. The server calls the pair mutually exclusive and answers INVALID_ARGUMENT, but the client packed both into one ReadConcern and sent it, so the caller learned about it a round trip later, in a status rather than in the call that was wrong. A test even asserted the two travelled independently. Rejected at construction now, with the reasoning in the message. A zero after_index waits for nothing and still combines freely, which is what the server accepts too; both cases are covered by tests and were checked against a running server. --- coordinode/coordinode/client.py | 13 ++++++++++++- tests/unit/test_consistency_helpers.py | 17 ++++++++++++++--- 2 files changed, 26 insertions(+), 4 deletions(-) diff --git a/coordinode/coordinode/client.py b/coordinode/coordinode/client.py index 7e41ef4..9493e5e 100644 --- a/coordinode/coordinode/client.py +++ b/coordinode/coordinode/client.py @@ -294,7 +294,9 @@ async def cypher( since the Unix epoch, so ``int(time.time() * 1_000_000)`` is now. Requires ``read_concern="snapshot"``; any other level is rejected with FAILED_PRECONDITION. The timestamp has to fall inside the MVCC retention window; older snapshots are - collected and the server answers UNAVAILABLE. + collected and the server answers UNAVAILABLE. It cannot be combined with a + non-zero ``after_index``: waiting for a new write and reading a fixed past are + opposite requests, and the pair is rejected. """ from coordinode._proto.coordinode.v1.query.cypher_pb2 import ( # type: ignore[import] ExecuteCypherRequest, @@ -1110,6 +1112,15 @@ def _make_read_concern(level: str | None, after_index: int | None, at_timestamp: if at_timestamp is not None: if not isinstance(at_timestamp, int) or isinstance(at_timestamp, bool) or at_timestamp < 0: raise ValueError(f"at_timestamp must be a non-negative integer, got {at_timestamp!r}") + # A fence waits for the log to reach an index; a pin reads a fixed + # point in the past. The server calls the pair mutually exclusive and + # answers INVALID_ARGUMENT, so say so here rather than a round trip + # later. A zero fence waits for nothing and does not conflict. + if after_index: + raise ValueError( + "after_index and at_timestamp are mutually exclusive: a causal fence " + "waits for new writes, a pinned read asks for a fixed past" + ) kwargs["at_timestamp"] = at_timestamp return pb.ReadConcern(**kwargs) diff --git a/tests/unit/test_consistency_helpers.py b/tests/unit/test_consistency_helpers.py index adabdfe..b30f935 100644 --- a/tests/unit/test_consistency_helpers.py +++ b/tests/unit/test_consistency_helpers.py @@ -59,9 +59,20 @@ def test_combines_with_a_level(self) -> None: assert rc.level == pb.READ_CONCERN_LEVEL_SNAPSHOT assert rc.at_timestamp == 42 - def test_pin_and_fence_are_independent(self) -> None: - rc = _make_read_concern(None, 7, 42) - assert (rc.after_index, rc.at_timestamp) == (7, 42) + def test_rejects_a_fence_together_with_a_pin(self) -> None: + """A fence waits for the log to advance; a pin reads a fixed past. + + The server calls the pair mutually exclusive and answers + INVALID_ARGUMENT, so asking for both is a mistake worth reporting + where it was made rather than one round trip later. + """ + with pytest.raises(ValueError, match="after_index and at_timestamp are mutually exclusive"): + _make_read_concern(None, 7, 42) + + def test_allows_a_zero_fence_with_a_pin(self) -> None: + """after_index=0 fences on nothing, so it does not conflict.""" + rc = _make_read_concern(None, 0, 42) + assert (rc.after_index, rc.at_timestamp) == (0, 42) @pytest.mark.parametrize("bad", [-1, True, "42", 1.5]) def test_rejects_non_negative_integers(self, bad: object) -> None: From f0b07d4bb9a3c978103e5ce32d29e441c6d95741 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 22:10:33 +0300 Subject: [PATCH 24/56] build: drive the pip install path through one interpreter `pip` and `python3` need not be the same interpreter: a pip belonging to 3.11 sitting ahead of a 3.13 python3 on PATH installs grpcio-tools where the generation step cannot see it, and the target fails on a machine that has exactly what it asked for. install-pip now runs the installs and the recursive proto target through PIP_PYTHON, which doubles as the way to name another interpreter. Verified by running the target end to end in a bare venv with no uv present. --- Makefile | 19 +++++++++++++------ 1 file changed, 13 insertions(+), 6 deletions(-) diff --git a/Makefile b/Makefile index e90f213..9bf3226 100644 --- a/Makefile +++ b/Makefile @@ -50,13 +50,20 @@ install: $(MAKE) proto # Install using pip (alternative that works without uv). -# proto runs through plain python3 here: the whole point of this target is to -# work on a machine that has no uv, and the default PYTHON goes through it. +# +# PIP_PYTHON, not a bare `pip`: the whole point of this target is a machine +# with no uv, and there `pip` and `python3` can be two different interpreters +# (a pip from 3.11 on PATH ahead of a 3.13 python3, say). Installing through +# one and generating stubs with the other puts grpcio-tools in an environment +# the generation step cannot see. Everything below goes through the same +# interpreter, and `make install-pip PIP_PYTHON=python3.12` picks another. +PIP_PYTHON ?= python3 + install-pip: - pip install -e "coordinode[dev]" - pip install -e langchain-coordinode/ - pip install -e llama-index-coordinode/ - $(MAKE) proto PYTHON=python3 + $(PIP_PYTHON) -m pip install -e "coordinode[dev]" + $(PIP_PYTHON) -m pip install -e langchain-coordinode/ + $(PIP_PYTHON) -m pip install -e llama-index-coordinode/ + $(MAKE) proto PYTHON="$(PIP_PYTHON)" test: proto-check test-unit From 90e5b0b9c6aadd6c20d534ad0603e58bfe6a6592 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 22:10:44 +0300 Subject: [PATCH 25/56] fix(demo): blank inert Cypher syntax before the session-scope check The engine ignores `/* ... */` and `// ...` spans, so a predicate written inside one restricts nothing. The guard read such a span as a live predicate, and `WHERE true /* n.session = $sess */ RETURN n` passed the check and then read every session, which is the whole thing the guard exists to prevent. Those spans and quoted strings are now blanked in a single left-to-right pass, so whichever opens first wins: `//` inside a string literal stays part of the string, and a quote inside an ignored span opens nothing. Both forms join the queries the notebook asserts on, alongside two that keep a genuine predicate standing next to an ignored span. --- demo/notebooks/03_langgraph_agent.ipynb | 45 +++++++++++++++++++------ 1 file changed, 34 insertions(+), 11 deletions(-) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 4d5f1dd..2ddc305 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -178,17 +178,25 @@ "# require parsing the Cypher AST, which is out of scope for a demo safety guard.\n", "# In production code, use server-side row-level security instead of client regex.\n", "# Scope guards. Presence is not enough: the session predicate has to sit\n", - "# inside the WHERE clause it claims to restrict, and it must be real syntax\n", - "# rather than text. Three ways a query slipped past an earlier version:\n", + "# inside the WHERE clause it claims to restrict, and it must be live syntax\n", + "# rather than text the engine ignores. Four ways a query slipped past an\n", + "# earlier version:\n", "#\n", "# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n", "# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n", "# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n", + "# WHERE true /* n.session = $sess */ commented out, so ignored\n", "#\n", - "# So quoted spans are blanked first, and the search is bounded to the WHERE\n", - "# clause: from the keyword to whichever clause opens next. Every pattern below\n", - "# excludes its own delimiters, so none backtracks across a long query.\n", - "_QUOTED_RE = re.compile(r\"'[^']*'|\\\"[^\\\"]*\\\"|`[^`]*`\")\n", + "# Quoted spans and comments are therefore blanked in one left-to-right pass:\n", + "# whichever opens first wins, so `//` inside a string stays part of the string\n", + "# and a quote inside a comment does not open one. The search is then bounded\n", + "# to the WHERE clause, from the keyword to whichever clause opens next. Every\n", + "# pattern below excludes its own delimiters, so none backtracks across a long\n", + "# query.\n", + "_MASKED_RE = re.compile(\n", + " r\"'[^']*'|\\\"[^\\\"]*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n", + " re.DOTALL,\n", + ")\n", "_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n", "_CLAUSE_START_RE = re.compile(\n", " r\"\\b(RETURN|WITH|MATCH|OPTIONAL|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL|MERGE\"\n", @@ -202,6 +210,12 @@ ")\n", "\n", "\n", + "def _blank(match: re.Match) -> str:\n", + " \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n", + " text = match.group(0)\n", + " return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n", + "\n", + "\n", "def _is_session_scoped(query: str) -> bool:\n", " \"\"\"Whether the query restricts itself to this session.\n", "\n", @@ -210,7 +224,7 @@ " $sess})` still slips through. Production code puts this on the server as\n", " row-level security rather than in a client regex.\n", " \"\"\"\n", - " bare = _QUOTED_RE.sub(\"''\", query)\n", + " bare = _MASKED_RE.sub(_blank, query)\n", " for where in _WHERE_RE.finditer(bare):\n", " nxt = _CLAUSE_START_RE.search(bare, where.end())\n", " clause = bare[where.end(): nxt.start() if nxt else len(bare)]\n", @@ -318,11 +332,12 @@ "### The guard, checked\n", "\n", "`query_facts` runs whatever Cypher the model writes, so the scope check is the\n", - "only thing keeping one session out of another's facts. Three queries below read\n", + "only thing keeping one session out of another's facts. Five queries below read\n", "every session and have to be refused: the predicate placed in `RETURN` instead\n", - "of `WHERE`, the same predicate hidden inside a backtick-quoted alias, and one\n", - "sitting in a string literal. This runs on every execution, so a loosened regex\n", - "fails here rather than in front of a user.\n" + "of `WHERE`, the same predicate hidden inside a backtick-quoted alias, one\n", + "sitting in a string literal, and one commented out in each of Cypher's two\n", + "comment forms. This runs on every execution, so a loosened regex fails here\n", + "rather than in front of a user.\n" ] }, { @@ -336,6 +351,11 @@ " \"MATCH (n {session: $sess}) RETURN n\",\n", " \"MATCH (a)-[r]->(b {session: $sess}) RETURN a, b\",\n", " \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n", + " # A comment must not swallow the predicate next to it.\n", + " \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n", + " \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n", + " # '//' inside a string opens no comment.\n", + " \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n", "]\n", "unscoped = [\n", " \"MATCH (n) RETURN n\",\n", @@ -347,6 +367,9 @@ " \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n", " # A string literal is data; it restricts nothing.\n", " \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n", + " # The engine ignores both comment forms, so neither restricts anything.\n", + " \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n", + " \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n", "]\n", "\n", "wrong = [q for q in scoped if not _is_session_scoped(q)]\n", From f2c072f515acb9e77b4c1f521ea8748088925a49 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 22:26:18 +0300 Subject: [PATCH 26/56] fix(embedded): keep a multi-vector a multi-vector on re-encode The embedded converter handed back a plain nested list, and the input path turns any list into an array, so reading a multi-vector property and writing it straight back changed its type and a schema validating it as a multi-vector rejected the write. The gRPC path was fixed the same way earlier in this branch; this closes the same hole on the in-process engine. The tag comes from the `coordinode` package when it is installed, so both paths agree on one type. This package does not depend on it (the embedded engine stands alone), so a missing import falls back to the plain list this returned before. Carries two tests against a real built extension, one proving the round trip and one proving an ordinary nested list is still not promoted. They skip where the extension has not been built, as the other embedded tests do. --- coordinode-embedded/src/lib.rs | 38 +++++++++++++++++++-- tests/unit/test_embedded_values.py | 53 ++++++++++++++++++++++++++++++ 2 files changed, 89 insertions(+), 2 deletions(-) create mode 100644 tests/unit/test_embedded_values.py diff --git a/coordinode-embedded/src/lib.rs b/coordinode-embedded/src/lib.rs index 4e999c7..70272dc 100644 --- a/coordinode-embedded/src/lib.rs +++ b/coordinode-embedded/src/lib.rs @@ -26,6 +26,19 @@ use rmpv::Value as MsgpackValue; // ── Value → PyObject conversion ────────────────────────────────────────────── +/// The `MultiVector` tag from the `coordinode` package, when it is installed. +/// +/// A list subclass, so a tagged value reads and compares exactly like the +/// nested list it replaces; the type exists only to survive a round trip. This +/// package does not depend on `coordinode` (the embedded engine is usable on +/// its own), so a missing import is an ordinary outcome and the caller falls +/// back to a plain list, which is what this returned before the tag existed. +fn multi_vector_type(py: Python<'_>) -> Option> { + py.import("coordinode._types") + .and_then(|m| m.getattr("MultiVector")) + .ok() +} + fn value_to_py(py: Python<'_>, v: Value) -> PyResult { match v { Value::Null => Ok(py.None()), @@ -71,7 +84,10 @@ fn value_to_py(py: Python<'_>, v: Value) -> PyResult { Value::Blob(b) | Value::Binary(b) => Ok(PyBytes::new(py, &b).into_any().unbind()), Value::Document(doc) => msgpack_to_py(py, doc), // Token-level embeddings: a list of equal-length float rows, mirroring - // how a single Vector is exposed. + // how a single Vector is exposed, but tagged so a value read here and + // written straight back keeps its type. An untagged nested list is + // indistinguishable from an array that happens to hold vectors, and + // the write turns the property into one. Value::MultiVector(rows) => { let outer = PyList::empty(py); for row in rows { @@ -81,7 +97,10 @@ fn value_to_py(py: Python<'_>, v: Value) -> PyResult { } outer.append(inner)?; } - Ok(outer.into_any().unbind()) + match multi_vector_type(py) { + Some(cls) => Ok(cls.call1((outer,))?.unbind()), + None => Ok(outer.into_any().unbind()), + } } // A graph path, shaped like its msgpack form on the wire: the node ids // it runs through and the relationship hops between them. @@ -173,6 +192,21 @@ fn py_to_value(obj: &Bound<'_, PyAny>) -> PyResult { return Ok(Value::String(s)); } if let Ok(list) = obj.downcast::() { + // A tagged multi-vector before the generic list branch: it IS a list, + // so the branch below would take it and write back an array, changing + // the property's type on a read-modify-write. + if let Some(cls) = multi_vector_type(obj.py()) { + if obj.is_instance(&cls).unwrap_or(false) { + let rows: Vec> = list + .iter() + .map(|row| row.extract::>()) + .collect::>() + .map_err(|_| { + PyValueError::new_err("MultiVector rows must be lists of numbers") + })?; + return Ok(Value::MultiVector(rows)); + } + } let items: PyResult> = list.iter().map(|x| py_to_value(&x)).collect(); return Ok(Value::Array(items?)); } diff --git a/tests/unit/test_embedded_values.py b/tests/unit/test_embedded_values.py new file mode 100644 index 0000000..a681c30 --- /dev/null +++ b/tests/unit/test_embedded_values.py @@ -0,0 +1,53 @@ +"""Value round trips through the embedded engine. + +Skipped on fresh checkouts where ``coordinode_embedded`` has not been built. +Exercised by the ``build-embedded`` CI job after the wheel is installed. +""" + +from __future__ import annotations + +import pytest + +ce = pytest.importorskip("coordinode_embedded") + +from coordinode._types import MultiVector # noqa: E402 (after the skip guard) + + +@pytest.fixture +def db(tmp_path): + client = ce.LocalClient(str(tmp_path / "values.db")) + yield client + client.close() + + +class TestMultiVectorRoundTrip: + """A multi-vector read back and written straight out keeps its type. + + The converter handed back a plain nested list, which the input path + cannot tell from an array that happens to hold vectors, so a + read-modify-write turned the property into an array and a schema + validating it as a multi-vector rejected the write. + """ + + def test_survives_a_read_modify_write(self, db) -> None: + db.cypher( + "CREATE (:Doc {tag: 'mv', emb: $mv})", + params={"mv": MultiVector([[0.5, 1.5], [2.5, 3.5]])}, + ) + + first = db.cypher("MATCH (n:Doc {tag: 'mv'}) RETURN n.emb AS emb")[0]["emb"] + assert isinstance(first, MultiVector) + assert first == [[0.5, 1.5], [2.5, 3.5]] + + db.cypher("MATCH (n:Doc {tag: 'mv'}) SET n.emb = $mv", params={"mv": first}) + + second = db.cypher("MATCH (n:Doc {tag: 'mv'}) RETURN n.emb AS emb")[0]["emb"] + assert isinstance(second, MultiVector), "the rewrite must not change the type" + assert second == first + + def test_a_plain_nested_list_is_not_promoted(self, db) -> None: + """Only the tag makes a multi-vector; a list of vectors stays a list.""" + rows = db.cypher("RETURN $rows AS rows", params={"rows": [[1.0, 2.0], [3.0, 4.0]]}) + + assert not isinstance(rows[0]["rows"], MultiVector) + assert rows[0]["rows"] == [[1.0, 2.0], [3.0, 4.0]] From 9520ef984f926ef381d8b8b14b3c958d7d422672 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 22:26:29 +0300 Subject: [PATCH 27/56] fix(demo): require every MATCH to carry its own session scope Two holes, both of which returned another session's facts while the guard approved the query. A single scoped pattern vouched for every other one: `MATCH (n), (m {session: $sess}) RETURN n` passed on the strength of `m` and returned the unrestricted `n`, and the same held for a second unscoped MATCH or OPTIONAL MATCH beside a scoped one. Scope is now checked per clause, in that clause's own pattern or its own WHERE, and independent patterns inside one MATCH are refused outright rather than attributed. The string mask stopped at a backslash-escaped quote, so `WHERE n.note = 'x \' .session = $sess'` left the predicate visible to a check that then approved a query filtering only on `n.note`. Escapes are honoured now. The rule errs strict: a pattern extending a scoped binding is refused too, because proving reachability needs the AST. That costs the agent a retry; the other direction leaks. All of it is asserted on 22 queries that run on every execution. --- demo/notebooks/03_langgraph_agent.ipynb | 133 ++++++++++++++++-------- 1 file changed, 89 insertions(+), 44 deletions(-) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 2ddc305..46a30da 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -172,37 +172,36 @@ " r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n", " re.IGNORECASE | re.DOTALL,\n", ")\n", - "# NOTE: this guard checks that AT LEAST ONE node pattern carries session scope.\n", - "# A Cartesian-product query such as `MATCH (n), (m {session: $sess}) RETURN n`\n", - "# would pass yet return unscoped rows for `n`. A complete per-alias check would\n", - "# require parsing the Cypher AST, which is out of scope for a demo safety guard.\n", - "# In production code, use server-side row-level security instead of client regex.\n", - "# Scope guards. Presence is not enough: the session predicate has to sit\n", - "# inside the WHERE clause it claims to restrict, and it must be live syntax\n", - "# rather than text the engine ignores. Four ways a query slipped past an\n", - "# earlier version:\n", + "# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n", + "# thing keeping one session out of another's facts, so it is built to refuse\n", + "# rather than to approve. Every way a query slipped past an earlier version:\n", "#\n", "# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n", "# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n", "# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n", "# WHERE true /* n.session = $sess */ commented out, so ignored\n", + "# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n", + "# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n", "#\n", - "# Quoted spans and comments are therefore blanked in one left-to-right pass:\n", - "# whichever opens first wins, so `//` inside a string stays part of the string\n", - "# and a quote inside a comment does not open one. The search is then bounded\n", - "# to the WHERE clause, from the keyword to whichever clause opens next. Every\n", - "# pattern below excludes its own delimiters, so none backtracks across a long\n", - "# query.\n", + "# So: quoted spans and comments are blanked in one left-to-right pass, with\n", + "# backslash escapes honoured, and then EVERY MATCH has to carry its own scope.\n", + "# The last line is why per-clause rather than \"somewhere in the query\": one\n", + "# scoped pattern used to vouch for an unscoped one beside it.\n", + "#\n", + "# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n", + "# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n", + "# node, because proving that needs the AST. A guard that refuses a valid\n", + "# query costs the agent one retry; one that admits an invalid query leaks.\n", "_MASKED_RE = re.compile(\n", - " r\"'[^']*'|\\\"[^\\\"]*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n", + " r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n", " re.DOTALL,\n", ")\n", - "_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n", - "_CLAUSE_START_RE = re.compile(\n", - " r\"\\b(RETURN|WITH|MATCH|OPTIONAL|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL|MERGE\"\n", - " r\"|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n", + "_CLAUSE_RE = re.compile(\n", + " r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n", + " r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n", " re.IGNORECASE,\n", ")\n", + "_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n", "_SESSION_EQ_RE = re.compile(r\"\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n", "_SESSION_NODE_SCOPE_RE = re.compile(\n", " r\"\\([^()]*\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\",\n", @@ -216,21 +215,51 @@ " return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n", "\n", "\n", - "def _is_session_scoped(query: str) -> bool:\n", - " \"\"\"Whether the query restricts itself to this session.\n", + "def _has_top_level_comma(pattern: str) -> bool:\n", + " \"\"\"Whether the pattern holds a comma outside any bracket.\n", "\n", - " A demo-grade guard, not authorization: it checks one node pattern or one\n", - " WHERE predicate, so a Cartesian product like `MATCH (n), (m {session:\n", - " $sess})` still slips through. Production code puts this on the server as\n", - " row-level security rather than in a client regex.\n", + " That comma separates two independent patterns, and only one of them may\n", + " be scoped. Quoted spans are already blanked, so no comma here is data.\n", " \"\"\"\n", - " bare = _MASKED_RE.sub(_blank, query)\n", - " for where in _WHERE_RE.finditer(bare):\n", - " nxt = _CLAUSE_START_RE.search(bare, where.end())\n", - " clause = bare[where.end(): nxt.start() if nxt else len(bare)]\n", - " if _SESSION_EQ_RE.search(clause):\n", + " depth = 0\n", + " for char in pattern:\n", + " if char in \"([{\":\n", + " depth += 1\n", + " elif char in \")]}\":\n", + " depth -= 1\n", + " elif char == \",\" and depth == 0:\n", " return True\n", - " return bool(_SESSION_NODE_SCOPE_RE.search(bare))\n", + " return False\n", + "\n", + "\n", + "def _is_session_scoped(query: str) -> bool:\n", + " \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n", + " bare = _MASKED_RE.sub(_blank, query)\n", + "\n", + " # A clause runs to whichever clause opens next. WHERE is not in that list,\n", + " # so a MATCH clause carries its own WHERE and nothing else: a predicate\n", + " # sitting in RETURN falls outside the MATCH it appears to qualify.\n", + " bodies = []\n", + " for match in _CLAUSE_RE.finditer(bare):\n", + " keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n", + " if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n", + " continue\n", + " nxt = _CLAUSE_RE.search(bare, match.end())\n", + " bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n", + "\n", + " if not bodies:\n", + " return False\n", + "\n", + " for body in bodies:\n", + " where = _WHERE_RE.search(body)\n", + " pattern, predicate = (\n", + " (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n", + " )\n", + " if _has_top_level_comma(pattern):\n", + " return False\n", + " if not (_SESSION_NODE_SCOPE_RE.search(pattern) or _SESSION_EQ_RE.search(predicate)):\n", + " return False\n", + " return True\n", "\n", "\n", "@tool\n", @@ -253,15 +282,19 @@ "@tool\n", "def query_facts(cypher: str) -> str:\n", " \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n", - " Must scope reads via either WHERE .session = $sess\n", + " Every MATCH must scope itself via WHERE .session = $sess\n", " or a node pattern {session: $sess}.\"\"\"\n", " q = cypher.strip()\n", " if _WRITE_CLAUSE_RE.search(q):\n", " return \"Only read-only Cypher is allowed in query_facts.\"\n", - " # Require $sess in a WHERE clause or node pattern, not just anywhere.\n", - " # Accepts both: WHERE n.session = $sess and MATCH (n {session: $sess})\n", + " # Each MATCH must carry its own scope, in its own pattern or its own WHERE.\n", " if not _is_session_scoped(q):\n", - " return \"Query must scope reads to the current session with either WHERE .session = $sess or {session: $sess}\"\n", + " return (\n", + " \"Every MATCH must scope itself to the current session, with either \"\n", + " \"WHERE .session = $sess or {session: $sess} in its pattern. \"\n", + " \"Independent patterns in one MATCH (comma-separated) are refused: \"\n", + " \"write them as separate scoped MATCH clauses.\"\n", + " )\n", " # Enforce a result cap so agents cannot dump the entire graph.\n", " # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n", " # or append LIMIT 20 when no LIMIT clause is present.\n", @@ -332,12 +365,14 @@ "### The guard, checked\n", "\n", "`query_facts` runs whatever Cypher the model writes, so the scope check is the\n", - "only thing keeping one session out of another's facts. Five queries below read\n", - "every session and have to be refused: the predicate placed in `RETURN` instead\n", - "of `WHERE`, the same predicate hidden inside a backtick-quoted alias, one\n", - "sitting in a string literal, and one commented out in each of Cypher's two\n", - "comment forms. This runs on every execution, so a loosened regex fails here\n", - "rather than in front of a user.\n" + "only thing keeping one session out of another's facts. The queries below are\n", + "the ones that fooled earlier versions of it, and each has to be refused now: a\n", + "predicate placed in `RETURN` rather than `WHERE`, one hidden in a\n", + "backtick-quoted alias, one inside a string literal, one commented out in each\n", + "of Cypher's two comment forms, one that ends its string early with an escaped\n", + "quote, and three where a single scoped pattern is used to vouch for an\n", + "unscoped one beside it. This runs on every execution, so a loosened rule fails\n", + "here rather than in front of a user.\n" ] }, { @@ -349,18 +384,21 @@ " \"MATCH (n) WHERE n.session = $sess RETURN n\",\n", " \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n", " \"MATCH (n {session: $sess}) RETURN n\",\n", - " \"MATCH (a)-[r]->(b {session: $sess}) RETURN a, b\",\n", + " \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n", " \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n", " # A comment must not swallow the predicate next to it.\n", " \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n", " \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n", - " # '//' inside a string opens no comment.\n", + " # '//' inside a string opens no comment, and an escaped quote does not\n", + " # end the string early.\n", " \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n", + " r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n", "]\n", "unscoped = [\n", " \"MATCH (n) RETURN n\",\n", " \"MATCH (n) WHERE n.session = $other RETURN n\",\n", " \"MATCH (n {sessionish: $sess}) RETURN n\",\n", + " \"RETURN $sess\",\n", " # The predicate is in RETURN, not in the WHERE it appears to qualify.\n", " \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n", " # The whole predicate is an alias, so it is a name and not a filter.\n", @@ -370,6 +408,13 @@ " # The engine ignores both comment forms, so neither restricts anything.\n", " \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n", " \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n", + " # The escape keeps the literal open, so the text after it is still data.\n", + " r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n", + " # One scoped pattern does not vouch for the unscoped one beside it: each\n", + " # of these returns every session's nodes through the unscoped alias.\n", + " \"MATCH (n), (m {session: $sess}) RETURN n\",\n", + " \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n", + " \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n", "]\n", "\n", "wrong = [q for q in scoped if not _is_session_scoped(q)]\n", From d6e4e3595424e9648ef5ca59f2b92e153fa58746 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 22:26:43 +0300 Subject: [PATCH 28/56] build(embedded): record the engine versions the submodule now pins The lock still named 0.5.1 for the workspace crates after the submodule moved to v0.5.3, so a build regenerated it every time. --- coordinode-embedded/Cargo.lock | 1106 ++++++++++++++++++++------------ 1 file changed, 690 insertions(+), 416 deletions(-) diff --git a/coordinode-embedded/Cargo.lock b/coordinode-embedded/Cargo.lock index e22c902..12a0df2 100644 --- a/coordinode-embedded/Cargo.lock +++ b/coordinode-embedded/Cargo.lock @@ -37,17 +37,6 @@ dependencies = [ "subtle", ] -[[package]] -name = "ahash" -version = "0.7.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "891477e0c6a8957309ee5c45a6368af3ae14bb510732d2684ffa19af310920f9" -dependencies = [ - "getrandom 0.2.17", - "once_cell", - "version_check", -] - [[package]] name = "ahash" version = "0.8.12" @@ -158,12 +147,6 @@ dependencies = [ "rustversion", ] -[[package]] -name = "arrayvec" -version = "0.7.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7c02d123df017efcdfbd739ef81735b36c5ba83ec3c59c80a9d7ecc718f92e50" - [[package]] name = "async-trait" version = "0.1.89" @@ -236,6 +219,12 @@ version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0b143524c9d0b6c3e8e80542a0a17e1e472ccfd5a3d3696bd6ad2b18248d3350" +[[package]] +name = "base16ct" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4c7f02d4ea65f2c1853089ffd8d2787bdbc63de2f0d29dedbcf8ccdfa0ccd4cf" + [[package]] name = "base2histogram" version = "0.2.3" @@ -248,6 +237,26 @@ version = "0.22.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "72b3254f16251a8381aa12e40e3c4d2f0199f8c6508fbecb9d91f575e0fbb8c6" +[[package]] +name = "base64ct" +version = "1.8.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2af50177e190e07a26ab74f8b1efbfe2ef87da2116221318cb1c2e82baf7de06" + +[[package]] +name = "bigdecimal" +version = "0.4.10" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4d6867f1565b3aad85681f1015055b087fcfd840d6aeee6eee7f2da317603695" +dependencies = [ + "autocfg", + "libm", + "num-bigint", + "num-integer", + "num-traits", + "serde", +] + [[package]] name = "bitflags" version = "2.11.0" @@ -263,18 +272,6 @@ dependencies = [ "crunchy", ] -[[package]] -name = "bitvec" -version = "1.0.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1bc2832c24239b0141d5674bb9174f9d68a8b5b3f2753311927c172ca46f7e9c" -dependencies = [ - "funty", - "radium", - "tap", - "wyz", -] - [[package]] name = "block-buffer" version = "0.10.4" @@ -318,70 +315,12 @@ dependencies = [ "syn 2.0.117", ] -[[package]] -name = "borsh" -version = "1.6.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cfd1e3f8955a5d7de9fab72fc8373fade9fb8a703968cb200ae3dc6cf08e185a" -dependencies = [ - "borsh-derive", - "bytes", - "cfg_aliases", -] - -[[package]] -name = "borsh-derive" -version = "1.6.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bfcfdc083699101d5a7965e49925975f2f55060f94f9a05e7187be95d530ca59" -dependencies = [ - "once_cell", - "proc-macro-crate", - "proc-macro2", - "quote", - "syn 2.0.117", -] - [[package]] name = "bumpalo" version = "3.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5d20789868f4b01b2f2caec9f5c4e0213b41e3e5702a50157d699ae31ced2fcb" -[[package]] -name = "byte-unit" -version = "5.2.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8c6d47a4e2961fb8721bcfc54feae6455f2f64e7054f9bc67e875f0e77f4c58d" -dependencies = [ - "rust_decimal", - "schemars", - "serde", - "utf8-width", -] - -[[package]] -name = "bytecheck" -version = "0.6.12" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "23cdc57ce23ac53c931e88a43d06d070a6fd142f2617be5855eb75efc9beb1c2" -dependencies = [ - "bytecheck_derive", - "ptr_meta", - "simdutf8", -] - -[[package]] -name = "bytecheck_derive" -version = "0.6.12" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3db406d29fbcd95542e92559bed4d8ad92636d1ca8b3b72ede10b4bcc010e659" -dependencies = [ - "proc-macro2", - "quote", - "syn 1.0.109", -] - [[package]] name = "byteorder" version = "1.5.0" @@ -413,8 +352,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "43c5703da9466b66a946814e1adf53ea2c90f10063b86290cc9eb67ce3478a20" dependencies = [ "find-msvc-tools", - "jobserver", - "libc", "shlex", ] @@ -431,10 +368,15 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801" [[package]] -name = "cfg_aliases" -version = "0.2.1" +name = "chacha20" +version = "0.9.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "613afe47fcd5fac7ccf1db93babcb082c5994d996f20b8b159f2ad1658eb5724" +checksum = "c3613f74bd2eac03dad61bd53dbe620703d4371614fe0bc3b9f04dd36fe4e818" +dependencies = [ + "cfg-if", + "cipher", + "cpufeatures 0.2.17", +] [[package]] name = "chacha20" @@ -447,6 +389,19 @@ dependencies = [ "rand_core 0.10.0", ] +[[package]] +name = "chacha20poly1305" +version = "0.10.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "10cd79432192d1c0f4e1a0fef9527696cc039165d729fb41b3f4f4f354c2dc35" +dependencies = [ + "aead", + "chacha20 0.9.1", + "cipher", + "poly1305", + "zeroize", +] + [[package]] name = "chrono" version = "0.4.44" @@ -492,6 +447,7 @@ checksum = "773f3b9af64447d2ce9850330c473515014aa235e6a783b02db81ff39e4a3dad" dependencies = [ "crypto-common 0.1.7", "inout", + "zeroize", ] [[package]] @@ -536,9 +492,9 @@ checksum = "c8d4a3bb8b1e0c1050499d1815f5ab16d04f0959b233085fb31653fbfc9d98f9" [[package]] name = "cmov" -version = "0.5.4" +version = "0.5.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c9ea0ac24bc397ab3c98583a3c9ba74fa56b09a4449bbe172b9b1ddb016027a" +checksum = "3f88a43d011fc4a6876cb7344703e297c71dda42494fee094d5f7c76bf13f746" [[package]] name = "colorchoice" @@ -547,10 +503,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1d07550c9036bf2ae0c684c4297d503f838287c83c53686d05370d0e139ae570" [[package]] -name = "compare" -version = "0.0.6" +name = "const-oid" +version = "0.9.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ea0095f6103c2a8b44acd6fd15960c801dafebf02e21940360833e0673f48ba7" +checksum = "c2459377285ad874054d797f3ccebf984978aa39129f6eafde5cdc8315b612f8" [[package]] name = "const-oid" @@ -567,9 +523,22 @@ dependencies = [ "unicode-segmentation", ] +[[package]] +name = "coordinode-cluster" +version = "0.5.3" +dependencies = [ + "coordinode-storage", + "parking_lot", + "serde", + "smallvec", + "thiserror", + "tokio", + "tracing", +] + [[package]] name = "coordinode-core" -version = "0.4.3" +version = "0.5.3" dependencies = [ "bytes", "rmp", @@ -585,7 +554,7 @@ dependencies = [ [[package]] name = "coordinode-embed" -version = "0.4.3" +version = "0.5.3" dependencies = [ "coordinode-core", "coordinode-lsm-tree", @@ -595,6 +564,7 @@ dependencies = [ "coordinode-search", "coordinode-storage", "coordinode-vector", + "parking_lot", "rmp-serde", "rmpv", "serde", @@ -618,20 +588,24 @@ dependencies = [ [[package]] name = "coordinode-lsm-tree" -version = "4.4.0" +version = "5.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cc8777750306c4350c2fa2697928dc75a1f44f1e510486bc89dbf9eb70ff06eb" +checksum = "c18dafd43ebda2d9f2cc29b7aaf7897c168bc62896a6d4ec2e81a45bc02791dd" dependencies = [ - "byteorder-lite", - "byteview", + "arc-swap", + "cpufeatures 0.3.0", "enum_dispatch", - "interval-heap", + "hashbrown 0.17.0", + "libc", + "libm", "log", - "lz4_flex", - "quick_cache", + "lz4_flex 0.13.0", + "once_cell", + "parking_lot", + "portable-atomic", "rustc-hash", "self_cell", - "sfa", + "spin 0.12.3", "tempfile", "varint-rs", "xxhash-rust", @@ -639,7 +613,7 @@ dependencies = [ [[package]] name = "coordinode-modality" -version = "0.4.3" +version = "0.5.3" dependencies = [ "coordinode-core", "coordinode-lsm-tree", @@ -647,6 +621,7 @@ dependencies = [ "coordinode-vector", "rmp-serde", "rmpv", + "s2", "serde", "thiserror", "tracing", @@ -654,8 +629,9 @@ dependencies = [ [[package]] name = "coordinode-query" -version = "0.4.3" +version = "0.5.3" dependencies = [ + "coordinode-cluster", "coordinode-core", "coordinode-modality", "coordinode-search", @@ -663,22 +639,28 @@ dependencies = [ "coordinode-vector", "pest", "pest_derive", + "rand 0.10.1", "rayon", + "regex", "rmp-serde", "rmpv", + "rustc-hash", "serde", "sha2 0.11.0", + "sqlparser", "thiserror", "tracing", + "unicode-normalization", ] [[package]] name = "coordinode-raft" -version = "0.4.3" +version = "0.5.3" dependencies = [ "bytes", "coordinode-core", "coordinode-storage", + "coordinode-wire", "futures-util", "metrics", "openraft", @@ -696,12 +678,12 @@ dependencies = [ [[package]] name = "coordinode-search" -version = "0.4.3" +version = "0.5.3" dependencies = [ "aes-gcm", "coordinode-storage", - "hmac", - "rand 0.10.2", + "hmac 0.13.0", + "rand 0.10.1", "rust-stemmers 1.2.0 (git+https://github.com/structured-world/rust-stemmers.git?branch=main)", "serde", "sha2 0.11.0", @@ -713,7 +695,7 @@ dependencies = [ [[package]] name = "coordinode-storage" -version = "0.4.3" +version = "0.5.3" dependencies = [ "byteorder-lite", "bytes", @@ -725,7 +707,7 @@ dependencies = [ "dashmap", "flume", "log", - "lz4_flex", + "lz4_flex 0.14.0", "metrics", "rayon", "rmp-serde", @@ -740,7 +722,7 @@ dependencies = [ [[package]] name = "coordinode-vector" -version = "0.4.3" +version = "0.5.3" dependencies = [ "coordinode-core", "coordinode-storage", @@ -748,10 +730,25 @@ dependencies = [ "loom", "rayon", "serde", + "smallvec", "thiserror", "tracing", ] +[[package]] +name = "coordinode-wire" +version = "0.5.3" +dependencies = [ + "bytes", + "prost", + "rustls", + "rustls-pki-types", + "rustls-rustcrypto", + "structured-zstd", + "thiserror", + "tonic", +] + [[package]] name = "core-foundation-sys" version = "0.8.7" @@ -834,6 +831,18 @@ version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "460fbee9c2c2f33933d720630a6a0bac33ba7053db5344fac858d4b8952d77d5" +[[package]] +name = "crypto-bigint" +version = "0.5.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0dc92fb57ca44df6db8059111ab3af99a63d5d0f8375d9972e319a379c6bab76" +dependencies = [ + "generic-array", + "rand_core 0.6.4", + "subtle", + "zeroize", +] + [[package]] name = "crypto-common" version = "0.1.7" @@ -872,6 +881,33 @@ dependencies = [ "cmov", ] +[[package]] +name = "curve25519-dalek" +version = "4.1.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "97fb8b7c4503de7d6ae7b42ab72a5a59857b4c937ec27a3d4539dba95b5ab2be" +dependencies = [ + "cfg-if", + "cpufeatures 0.2.17", + "curve25519-dalek-derive", + "digest 0.10.7", + "fiat-crypto", + "rustc_version", + "subtle", + "zeroize", +] + +[[package]] +name = "curve25519-dalek-derive" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f46882e17999c6cc590af592290432be3bce0428cb0d5f8b6715e4dc7b383eb3" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.117", +] + [[package]] name = "darling" version = "0.23.0" @@ -926,6 +962,17 @@ version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c286de4e81ea2590afc24d754e0f83810c566f50a1388fa75ebd57928c0d9745" +[[package]] +name = "der" +version = "0.7.10" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e7c1832837b905bbfb5101e07cc24c8deddf52f93225eee6ead5f4d63d53ddcb" +dependencies = [ + "const-oid 0.9.6", + "pem-rfc7468", + "zeroize", +] + [[package]] name = "deranged" version = "0.5.8" @@ -966,7 +1013,9 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9ed9a281f7bc9b7576e61468ba615a66a5c8cfdff42420a70aa82701a3b1e292" dependencies = [ "block-buffer 0.10.4", + "const-oid 0.9.6", "crypto-common 0.1.7", + "subtle", ] [[package]] @@ -976,7 +1025,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4850db49bf08e663084f7fb5c87d202ef91a3907271aff24a94eb97ff039153c" dependencies = [ "block-buffer 0.12.0", - "const-oid", + "const-oid 0.10.2", "crypto-common 0.2.1", "ctutils", ] @@ -998,10 +1047,42 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "117240f60069e65410b3ae1bb213295bd828f707b5bec6596a1afc8793ce0cbc" [[package]] -name = "dyn-clone" -version = "1.0.20" +name = "ecdsa" +version = "0.16.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ee27f32b5c5292967d2d4a9d7f1e0b0aed2c15daded5a60300e4abb9d8020bca" +dependencies = [ + "der", + "digest 0.10.7", + "elliptic-curve", + "rfc6979", + "signature", + "spki", +] + +[[package]] +name = "ed25519" +version = "2.2.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "115531babc129696a58c64a4fef0a8bf9e9698629fb97e9e40767d235cfbcd53" +dependencies = [ + "pkcs8", + "signature", +] + +[[package]] +name = "ed25519-dalek" +version = "2.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d0881ea181b1df73ff77ffaaf9c7544ecc11e82fba9b5f27b262a3c73a332555" +checksum = "70e796c081cee67dc755e1a36a0a172b897fab85fc3f6bc48307991f64e4eca9" +dependencies = [ + "curve25519-dalek", + "ed25519", + "serde", + "sha2 0.10.9", + "subtle", + "zeroize", +] [[package]] name = "either" @@ -1009,6 +1090,27 @@ version = "1.15.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "48c757948c5ede0e46177b7add2e67155f70e33c07fea8284df6576da70b3719" +[[package]] +name = "elliptic-curve" +version = "0.13.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b5e6043086bf7973472e0c7dff2142ea0b680d30e18d9cc40f267efbf222bd47" +dependencies = [ + "base16ct", + "crypto-bigint", + "digest 0.10.7", + "ff", + "generic-array", + "group", + "hkdf", + "pem-rfc7468", + "pkcs8", + "rand_core 0.6.4", + "sec1", + "subtle", + "zeroize", +] + [[package]] name = "enum_dispatch" version = "0.3.13" @@ -1060,6 +1162,22 @@ version = "2.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9f1f227452a390804cdb637b74a86990f2a7d7ba4b7d5693aac9b4dd6defd8d6" +[[package]] +name = "ff" +version = "0.13.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c0b50bfb653653f9ca9095b427bed08ab8d75a137839d9ad64eb11810d5b6393" +dependencies = [ + "rand_core 0.6.4", + "subtle", +] + +[[package]] +name = "fiat-crypto" +version = "0.2.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "28dea519a9695b9977216879a3ebfddf92f1c08c05d984f8996aecd6ecdc811d" + [[package]] name = "find-msvc-tools" version = "0.1.9" @@ -1078,7 +1196,7 @@ version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5e139bc46ca777eb5efaf62df0ab8cc5fd400866427e56c68b22e414e53bd3be" dependencies = [ - "spin", + "spin 0.9.8", ] [[package]] @@ -1109,12 +1227,6 @@ dependencies = [ "windows-sys 0.59.0", ] -[[package]] -name = "funty" -version = "2.0.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c" - [[package]] name = "futures-channel" version = "0.3.32" @@ -1189,6 +1301,7 @@ checksum = "85649ca51fd72272d7821adaf274ad91c288277713d9c18820d8499a7ff69e9a" dependencies = [ "typenum", "version_check", + "zeroize", ] [[package]] @@ -1202,18 +1315,6 @@ dependencies = [ "wasi", ] -[[package]] -name = "getrandom" -version = "0.3.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "899def5c37c4fd7b2664648c28120ecec138e4d395b459e5ca34f9cce2dd77fd" -dependencies = [ - "cfg-if", - "libc", - "r-efi 5.3.0", - "wasip2", -] - [[package]] name = "getrandom" version = "0.4.2" @@ -1222,7 +1323,7 @@ checksum = "0de51e6874e94e7bf76d726fc5d13ba782deca734ff60d5bb2fb2607c7406555" dependencies = [ "cfg-if", "libc", - "r-efi 6.0.0", + "r-efi", "rand_core 0.10.0", "wasip2", "wasip3", @@ -1238,6 +1339,17 @@ dependencies = [ "polyval", ] +[[package]] +name = "group" +version = "0.13.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f0f9ef7462f7c099f518d754361858f86d8a07af53ba9af0fe635bbccb151a63" +dependencies = [ + "ff", + "rand_core 0.6.4", + "subtle", +] + [[package]] name = "h2" version = "0.4.13" @@ -1257,15 +1369,6 @@ dependencies = [ "tracing", ] -[[package]] -name = "hashbrown" -version = "0.12.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888" -dependencies = [ - "ahash 0.7.8", -] - [[package]] name = "hashbrown" version = "0.14.5" @@ -1299,6 +1402,9 @@ name = "hashbrown" version = "0.17.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4f467dd6dccf739c208452f8014c75c18bb8301b050ad1cfb27153803edb0f51" +dependencies = [ + "foldhash 0.2.0", +] [[package]] name = "heck" @@ -1306,6 +1412,24 @@ version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea" +[[package]] +name = "hkdf" +version = "0.12.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7b5f8eb2ad728638ea2c7d47a21db23b7b58a72ed6a38256b8a1849f15fbbdf7" +dependencies = [ + "hmac 0.12.1", +] + +[[package]] +name = "hmac" +version = "0.12.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6c49c37c09c17a53d937dfbb742eb3a961d65a994e6bcdcf37e7399d0cc8ab5e" +dependencies = [ + "digest 0.10.7", +] + [[package]] name = "hmac" version = "0.13.0" @@ -1496,15 +1620,6 @@ dependencies = [ "generic-array", ] -[[package]] -name = "interval-heap" -version = "0.0.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "11274e5e8e89b8607cfedc2910b6626e998779b48a019151c7604d0adcb86ac6" -dependencies = [ - "compare", -] - [[package]] name = "inventory" version = "0.3.24" @@ -1530,20 +1645,19 @@ dependencies = [ ] [[package]] -name = "itoa" -version = "1.0.18" +name = "itertools" +version = "0.15.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f42a60cbdf9a97f5d2305f08a87dc4e09308d1276d28c869c684d7777685682" +checksum = "8b4baf93f58d4425749ca49a51c50ebab072c5df6994d08fed93541c331481dc" +dependencies = [ + "either", +] [[package]] -name = "jobserver" -version = "0.1.34" +name = "itoa" +version = "1.0.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9afb3de4395d6b3e67a780b6de64b51c978ecf11cb9a462c66be7d4ca9039d33" -dependencies = [ - "getrandom 0.3.4", - "libc", -] +checksum = "8f42a60cbdf9a97f5d2305f08a87dc4e09308d1276d28c869c684d7777685682" [[package]] name = "js-sys" @@ -1560,6 +1674,9 @@ name = "lazy_static" version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe" +dependencies = [ + "spin 0.9.8", +] [[package]] name = "leb128fmt" @@ -1579,6 +1696,12 @@ version = "0.2.185" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "52ff2c0fe9bc6cb6b14a0592c2ff4fa9ceb83eea9db979b0487cd054946a2b8f" +[[package]] +name = "libm" +version = "0.2.16" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981" + [[package]] name = "linux-raw-sys" version = "0.12.1" @@ -1596,9 +1719,9 @@ dependencies = [ [[package]] name = "log" -version = "0.4.29" +version = "0.4.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5e5032e24019045c762d3c0f28f5b6b8bbf38563a65908389bf7978758920897" +checksum = "f9f8bd3e56ce4dfc153cf470fffbfa98c7620958b312ca5c3a4b8d5181fd13c6" [[package]] name = "loom" @@ -1627,6 +1750,12 @@ name = "lz4_flex" version = "0.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "db9a0d582c2874f68138a16ce1867e0ffde6c0bb0a0df85e1f36d04146db488a" + +[[package]] +name = "lz4_flex" +version = "0.14.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ecbdfe44b1bd960b68170b417450a628c43f7cf56bb3c5317e61cb230ee7f226" dependencies = [ "twox-hash", ] @@ -1701,7 +1830,7 @@ version = "0.24.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5d5312e9ba3771cfa961b585728215e3d972c950a3eed9252aa093d6301277e8" dependencies = [ - "ahash 0.8.12", + "ahash", "portable-atomic", ] @@ -1774,6 +1903,32 @@ dependencies = [ "windows-sys 0.61.2", ] +[[package]] +name = "num-bigint" +version = "0.4.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c89e69e7e0f03bea5ef08013795c25018e101932225a656383bd384495ecc367" +dependencies = [ + "num-integer", + "num-traits", +] + +[[package]] +name = "num-bigint-dig" +version = "0.8.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e661dda6640fad38e827a6d4a310ff4763082116fe217f279885c97f511bb0b7" +dependencies = [ + "lazy_static", + "libm", + "num-integer", + "num-iter", + "num-traits", + "rand 0.8.5", + "smallvec", + "zeroize", +] + [[package]] name = "num-complex" version = "0.4.6" @@ -1798,6 +1953,16 @@ dependencies = [ "num-traits", ] +[[package]] +name = "num-iter" +version = "0.1.46" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c92800bd69a1eac91786bcfe9da64a897eb72911b8dc3095decbd07429e8048b" +dependencies = [ + "num-integer", + "num-traits", +] + [[package]] name = "num-traits" version = "0.2.19" @@ -1805,6 +1970,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841" dependencies = [ "autocfg", + "libm", ] [[package]] @@ -1849,26 +2015,26 @@ checksum = "c08d65885ee38876c4f86fa503fb49d7b507c2b62552df7c70b2fce627e06381" [[package]] name = "openraft" -version = "0.10.0-alpha.20" +version = "0.10.0-alpha.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "42a7b7775774f72c1ec9c4a7a74ec5274515c66c0af40b0f8119ebd36ec3fde4" +checksum = "06fe14d529f8fc098fbb4b9655d5db9b7ee0594e6a9d4e220aa931618de17b1f" dependencies = [ "anyerror", "backoff-series", "base2histogram", - "byte-unit", "chrono", "clap", "derive_more", "display-more", "futures-util", - "itertools", + "itertools 0.15.0", "maplit", "openraft-macros", "openraft-rt", "openraft-rt-tokio", + "parse-size", "peel-off", - "rand 0.10.2", + "rand 0.10.1", "serde", "smallvec", "thiserror", @@ -1878,39 +2044,39 @@ dependencies = [ [[package]] name = "openraft-macros" -version = "0.10.0-alpha.20" +version = "0.10.0-alpha.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "880853cd85c2dd7883122134abcc5483005dd175d6027e9e00c1eede8fd2a956" +checksum = "f5c57259539e016f70d05ea7e264573cc5ddabd651a127a13374e47b165b7664" dependencies = [ "chrono", "proc-macro2", "quote", "semver", - "syn 2.0.117", + "syn 3.0.4", ] [[package]] name = "openraft-rt" -version = "0.10.0-alpha.20" +version = "0.10.0-alpha.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0ba87cea8e45601807f2537fd9e657e02c9ee2fdaa9be4ece013b296b03b2c97" +checksum = "02379ddf29c426905a6e91c5df522003ee2a9a9811b3b8be01e90ab1106ecef6" dependencies = [ "futures-channel", "futures-util", "openraft-macros", "pin-project-lite", - "rand 0.10.2", + "rand 0.10.1", ] [[package]] name = "openraft-rt-tokio" -version = "0.10.0-alpha.20" +version = "0.10.0-alpha.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2a539ef5ef89d4da720c56300aeb702d6ddf2a9fa653b029b79d30e5f8cf68fa" +checksum = "cfeb8c656d8b0e01319aafc70f77b3b312cac56d07adf157d80b49677cc2fcec" dependencies = [ "futures-util", "openraft-rt", - "rand 0.10.2", + "rand 0.10.1", "tokio", ] @@ -1932,6 +2098,30 @@ dependencies = [ "stable_deref_trait", ] +[[package]] +name = "p256" +version = "0.13.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c9863ad85fa8f4460f9c48cb909d38a0d689dba1f6f6988a5e3e0d31071bcd4b" +dependencies = [ + "ecdsa", + "elliptic-curve", + "primeorder", + "sha2 0.10.9", +] + +[[package]] +name = "p384" +version = "0.13.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fe42f1670a52a47d448f14b6a5c61dd78fce51856e68edaa38f7ae3a46b8d6b6" +dependencies = [ + "ecdsa", + "elliptic-curve", + "primeorder", + "sha2 0.10.9", +] + [[package]] name = "parking_lot" version = "0.12.5" @@ -1955,6 +2145,12 @@ dependencies = [ "windows-link", ] +[[package]] +name = "parse-size" +version = "1.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "487f2ccd1e17ce8c1bfab3a65c89525af41cfad4c8659021a1e9a2aacd73b89b" + [[package]] name = "parse-zoneinfo" version = "0.3.1" @@ -1964,12 +2160,27 @@ dependencies = [ "regex", ] +[[package]] +name = "paste" +version = "1.0.15" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "57c0d7b74b563b49d38dae00a0c37d4d6de9b432382b2892f0574ddcae73fd0a" + [[package]] name = "peel-off" version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f3420ea4424090cbd75a688996f696a807c68d6744b4863591b86435dc3078e9" +[[package]] +name = "pem-rfc7468" +version = "0.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "88b39c9bfcfc231068454382784bb460aae594343fb030d46e9f50a645418412" +dependencies = [ + "base64ct", +] + [[package]] name = "percent-encoding" version = "2.3.2" @@ -2095,10 +2306,47 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a89322df9ebe1c1578d689c92318e070967d1042b512afbe49518723f4e6d5cd" [[package]] -name = "pkg-config" -version = "0.3.33" +name = "pkcs1" +version = "0.7.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "19f132c84eca552bf34cab8ec81f1c1dcc229b811638f9d283dceabe58c5569e" +checksum = "c8ffb9f10fa047879315e6625af03c164b16962a5368d724ed16323b68ace47f" +dependencies = [ + "der", + "pkcs8", + "spki", +] + +[[package]] +name = "pkcs5" +version = "0.7.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e847e2c91a18bfa887dd028ec33f2fe6f25db77db3619024764914affe8b69a6" +dependencies = [ + "der", + "spki", +] + +[[package]] +name = "pkcs8" +version = "0.10.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f950b2377845cebe5cf8b5165cb3cc1a5e0fa5cfa3e1f7f55707d8fd82e0a7b7" +dependencies = [ + "der", + "pkcs5", + "spki", +] + +[[package]] +name = "poly1305" +version = "0.8.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8159bd90725d2df49889a078b54f4f79e87f1f8a8444194cdca81d38f5393abf" +dependencies = [ + "cpufeatures 0.2.17", + "opaque-debug", + "universal-hash", +] [[package]] name = "polyval" @@ -2153,12 +2401,12 @@ dependencies = [ ] [[package]] -name = "proc-macro-crate" -version = "3.5.0" +name = "primeorder" +version = "0.13.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e67ba7e9b2b56446f1d419b1d807906278ffa1a658a8a5d8a39dcb1f5a78614f" +checksum = "353e1ca18966c16d9deb1c69278edbc5f194139612772bd9537af60ac231e1e6" dependencies = [ - "toml_edit", + "elliptic-curve", ] [[package]] @@ -2187,7 +2435,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "343d3bd7056eda839b03204e68deff7d1b13aba7af2b2fd16890697274262ee7" dependencies = [ "heck", - "itertools", + "itertools 0.14.0", "log", "multimap", "petgraph", @@ -2208,7 +2456,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "27c6023962132f4b30eb4c172c91ce92d933da334c59c23cddee82358ddafb0b" dependencies = [ "anyhow", - "itertools", + "itertools 0.14.0", "proc-macro2", "quote", "syn 2.0.117", @@ -2223,26 +2471,6 @@ dependencies = [ "prost", ] -[[package]] -name = "ptr_meta" -version = "0.1.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0738ccf7ea06b608c10564b31debd4f5bc5e197fc8bfe088f68ae5ce81e7a4f1" -dependencies = [ - "ptr_meta_derive", -] - -[[package]] -name = "ptr_meta_derive" -version = "0.1.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "16b845dbfca988fa33db069c0e230574d15a3088f147a87b64c7589eb662c9ac" -dependencies = [ - "proc-macro2", - "quote", - "syn 1.0.109", -] - [[package]] name = "pulldown-cmark" version = "0.13.3" @@ -2326,16 +2554,6 @@ dependencies = [ "syn 2.0.117", ] -[[package]] -name = "quick_cache" -version = "0.6.21" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5a70b1b8b47e31d0498ecbc3c5470bb931399a8bfed1fd79d1717a61ce7f96e3" -dependencies = [ - "equivalent", - "hashbrown 0.16.1", -] - [[package]] name = "quote" version = "1.0.45" @@ -2345,42 +2563,29 @@ dependencies = [ "proc-macro2", ] -[[package]] -name = "r-efi" -version = "5.3.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f" - [[package]] name = "r-efi" version = "6.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f8dcc9c7d52a811697d2151c701e0d08956f92b0e24136cf4cf27b57a6a0d9bf" -[[package]] -name = "radium" -version = "0.7.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dc33ff2d4973d518d823d61aa239014831e521c75da58e3df4840d3f47749d09" - [[package]] name = "rand" version = "0.8.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404" dependencies = [ - "libc", "rand_chacha", "rand_core 0.6.4", ] [[package]] name = "rand" -version = "0.10.2" +version = "0.10.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c7f5fa3a058cd35567ef9bfa5e75732bee0f9e4c55fa90477bef2dfcdbc4be80" +checksum = "d2e8e8bcc7961af1fdac401278c6a831614941f6164ee3bf4ce61b7edb162207" dependencies = [ - "chacha20", + "chacha20 0.10.0", "getrandom 0.4.2", "rand_core 0.10.0", ] @@ -2445,26 +2650,6 @@ dependencies = [ "bitflags", ] -[[package]] -name = "ref-cast" -version = "1.0.25" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f354300ae66f76f1c85c5f84693f0ce81d747e2c3f21a45fef496d89c960bf7d" -dependencies = [ - "ref-cast-impl", -] - -[[package]] -name = "ref-cast-impl" -version = "1.0.25" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b7186006dcb21920990093f30e3dea63b7d6e977bf1256be20c3563a5db070da" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.117", -] - [[package]] name = "regex" version = "1.12.3" @@ -2495,41 +2680,27 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "dc897dd8d9e8bd1ed8cdad82b5966c3e0ecae09fb1907d58efaa013543185d0a" [[package]] -name = "rend" -version = "0.4.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "71fe3824f5629716b1589be05dacd749f6aa084c87e00e016714a8cdfccc997c" -dependencies = [ - "bytecheck", -] - -[[package]] -name = "rkyv" -version = "0.7.46" +name = "rfc6979" +version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2297bf9c81a3f0dc96bc9521370b88f054168c29826a75e89c55ff196e7ed6a1" +checksum = "f8dd2a808d456c4a54e300a23e9f5a67e122c3024119acbfd73e3bf664491cb2" dependencies = [ - "bitvec", - "bytecheck", - "bytes", - "hashbrown 0.12.3", - "ptr_meta", - "rend", - "rkyv_derive", - "seahash", - "tinyvec", - "uuid", + "hmac 0.12.1", + "subtle", ] [[package]] -name = "rkyv_derive" -version = "0.7.46" +name = "ring" +version = "0.17.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "84d7b42d4b8d06048d3ac8db0eb31bcb942cbeb709f0b5f2b2ebde398d3038f5" +checksum = "a4689e6c2294d81e88dc6261c768b63bc4fcdb852be6d1352498b114f61383b7" dependencies = [ - "proc-macro2", - "quote", - "syn 1.0.109", + "cc", + "cfg-if", + "getrandom 0.2.17", + "libc", + "untrusted", + "windows-sys 0.52.0", ] [[package]] @@ -2562,6 +2733,27 @@ dependencies = [ "serde_bytes", ] +[[package]] +name = "rsa" +version = "0.9.10" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b8573f03f5883dcaebdfcf4725caa1ecb9c15b2ef50c43a07b816e06799bb12d" +dependencies = [ + "const-oid 0.9.6", + "digest 0.10.7", + "num-bigint-dig", + "num-integer", + "num-traits", + "pkcs1", + "pkcs8", + "rand_core 0.6.4", + "sha2 0.10.9", + "signature", + "spki", + "subtle", + "zeroize", +] + [[package]] name = "rust-stemmers" version = "1.2.0" @@ -2581,23 +2773,6 @@ dependencies = [ "serde_derive", ] -[[package]] -name = "rust_decimal" -version = "1.41.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2ce901f9a19d251159075a4c37af514c3b8ef99c22e02dd8c19161cf397ee94a" -dependencies = [ - "arrayvec", - "borsh", - "bytes", - "num-traits", - "rand 0.8.5", - "rkyv", - "serde", - "serde_json", - "wasm-bindgen", -] - [[package]] name = "rustc-hash" version = "2.1.2" @@ -2626,6 +2801,81 @@ dependencies = [ "windows-sys 0.61.2", ] +[[package]] +name = "rustls" +version = "0.23.43" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0283386ce02abc0151e1761d08802dfe86c173b0b494af5cbc086574e453da06" +dependencies = [ + "log", + "once_cell", + "rustls-pki-types", + "rustls-webpki 0.103.15", + "subtle", + "zeroize", +] + +[[package]] +name = "rustls-pki-types" +version = "1.15.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2f4925028c7eb5d1fcdaf196971378ed9d2c1c4efc7dc5d011256f76c99c0a96" +dependencies = [ + "zeroize", +] + +[[package]] +name = "rustls-rustcrypto" +version = "0.0.2-alpha" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f12052947763ab8515f753315357599e9b0b4dab3b8ba15f30f725fe6d025557" +dependencies = [ + "aead", + "aes-gcm", + "chacha20poly1305", + "crypto-common 0.1.7", + "der", + "digest 0.10.7", + "ecdsa", + "ed25519-dalek", + "hmac 0.12.1", + "p256", + "p384", + "paste", + "pkcs8", + "rand_core 0.6.4", + "rsa", + "rustls", + "rustls-pki-types", + "rustls-webpki 0.102.8", + "sec1", + "sha2 0.10.9", + "signature", + "x25519-dalek", +] + +[[package]] +name = "rustls-webpki" +version = "0.102.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "64ca1bc8749bd4cf37b5ce386cc146580777b4e8572c7b97baf22c83f444bee9" +dependencies = [ + "ring", + "rustls-pki-types", + "untrusted", +] + +[[package]] +name = "rustls-webpki" +version = "0.103.15" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f3c3cf1d8b1e7d4927e2d154c3fcb02979afb9939629c62cd9048d4f07b60ac2" +dependencies = [ + "ring", + "rustls-pki-types", + "untrusted", +] + [[package]] name = "rustversion" version = "1.0.22" @@ -2633,15 +2883,14 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d" [[package]] -name = "schemars" -version = "1.2.1" +name = "s2" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a2b42f36aa1cd011945615b92222f6bf73c599a102a300334cd7f8dbeec726cc" +checksum = "081105773b1c0ff138641d8d27206aa1ea08fe604736a17f5af7d3c49f1500d7" dependencies = [ - "dyn-clone", - "ref-cast", + "bigdecimal", + "libm", "serde", - "serde_json", ] [[package]] @@ -2657,10 +2906,18 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49" [[package]] -name = "seahash" -version = "4.1.0" +name = "sec1" +version = "0.7.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1c107b6f4780854c8b126e228ea8869f4d7b71260f962fefb57b996b8959ba6b" +checksum = "d3e97a565f76233a6003f9f5c54be1d9c5bdfa3eccfb189469f11ec4901c47dc" +dependencies = [ + "base16ct", + "der", + "generic-array", + "pkcs8", + "subtle", + "zeroize", +] [[package]] name = "self_cell" @@ -2727,17 +2984,6 @@ dependencies = [ "zmij", ] -[[package]] -name = "sfa" -version = "1.0.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a1296838937cab56cd6c4eeeb8718ec777383700c33f060e2869867bd01d1175" -dependencies = [ - "byteorder-lite", - "log", - "xxhash-rust", -] - [[package]] name = "sha2" version = "0.10.9" @@ -2786,10 +3032,14 @@ dependencies = [ ] [[package]] -name = "simdutf8" -version = "0.1.5" +name = "signature" +version = "2.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e3a9fe34e3e7a50316060351f37187a3f546bce95496156754b601a5fa71b76e" +checksum = "77549399552de45a898a580c1b41d445bf730df867cc44e6c0233bbc4b8329de" +dependencies = [ + "digest 0.10.7", + "rand_core 0.6.4", +] [[package]] name = "siphasher" @@ -2817,6 +3067,9 @@ name = "smallvec" version = "1.15.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03" +dependencies = [ + "serde", +] [[package]] name = "socket2" @@ -2837,6 +3090,31 @@ dependencies = [ "lock_api", ] +[[package]] +name = "spin" +version = "0.12.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0134f9043ed38b087ac4f7d4af44c79e2c9e5094421fe3164f435ce585953b10" + +[[package]] +name = "spki" +version = "0.7.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d91ed6c858b01f942cd56b37a94b3e0a1798290327d1236e4d9cf4eaca44d29d" +dependencies = [ + "base64ct", + "der", +] + +[[package]] +name = "sqlparser" +version = "0.52.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9a875d8cd437cc8a97e9aeaeea352ec9a19aea99c23e9effb17757291de80b08" +dependencies = [ + "log", +] + [[package]] name = "stable_deref_trait" version = "1.2.1" @@ -2859,6 +3137,15 @@ version = "0.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f" +[[package]] +name = "structured-zstd" +version = "0.0.49" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "392eea135985654a313cdfee001e93031bacd96a3693a5dc4b0d13793e40b27a" +dependencies = [ + "twox-hash", +] + [[package]] name = "subtle" version = "2.6.1" @@ -2867,9 +3154,9 @@ checksum = "13c2bddecc57b384dee18652358fb23172facb8a2c51ccc10d74c157bdea3292" [[package]] name = "syn" -version = "1.0.109" +version = "2.0.117" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237" +checksum = "e665b8803e7b1d2a727f4023456bbbbe74da67099c585258af0ad9c5013b9b99" dependencies = [ "proc-macro2", "quote", @@ -2878,9 +3165,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.117" +version = "3.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e665b8803e7b1d2a727f4023456bbbbe74da67099c585258af0ad9c5013b9b99" +checksum = "e6275cddf4610d1775e6d1fe9469b2e77d0f39fd98fb7450901b821e0c53649f" dependencies = [ "proc-macro2", "quote", @@ -2914,11 +3201,11 @@ dependencies = [ "fnv", "fs4", "htmlescape", - "itertools", + "itertools 0.14.0", "levenshtein_automata", "log", "lru", - "lz4_flex", + "lz4_flex 0.13.0", "measure_time", "memmap2", "once_cell", @@ -2963,7 +3250,7 @@ checksum = "c57166f5bcfd478f370ab8445afb4678dce44801fa5ce5c451aaf8595583c5dc" dependencies = [ "downcast-rs", "fastdivide", - "itertools", + "itertools 0.14.0", "serde", "tantivy-bitpacker", "tantivy-common", @@ -3015,11 +3302,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8a2cfc3ac5164cbadc28965ffb145a8f47582a60ae5897859ad8d4316596c606" dependencies = [ "futures-util", - "itertools", + "itertools 0.14.0", "tantivy-bitpacker", "tantivy-common", "tantivy-fst", - "zstd", ] [[package]] @@ -3041,12 +3327,6 @@ dependencies = [ "serde", ] -[[package]] -name = "tap" -version = "1.0.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "55937e1799185b12863d447f42597ed69d9928686b8d88a1df17376a097d8369" - [[package]] name = "target-lexicon" version = "0.13.5" @@ -3060,7 +3340,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "32497e9a4c7b38532efcdebeef879707aa9f794296a4f0244f6f69e9bc8574bd" dependencies = [ "fastrand", - "getrandom 0.3.4", + "getrandom 0.4.2", "once_cell", "rustix", "windows-sys 0.61.2", @@ -3169,6 +3449,16 @@ dependencies = [ "syn 2.0.117", ] +[[package]] +name = "tokio-rustls" +version = "0.26.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1729aa945f29d91ba541258c8df89027d5792d85a8841fb65e8bf0f4ede4ef61" +dependencies = [ + "rustls", + "tokio", +] + [[package]] name = "tokio-stream" version = "0.1.18" @@ -3193,36 +3483,6 @@ dependencies = [ "tokio", ] -[[package]] -name = "toml_datetime" -version = "1.1.1+spec-1.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3165f65f62e28e0115a00b2ebdd37eb6f3b641855f9d636d3cd4103767159ad7" -dependencies = [ - "serde_core", -] - -[[package]] -name = "toml_edit" -version = "0.25.11+spec-1.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0b59c4d22ed448339746c59b905d24568fcbb3ab65a500494f7b8c3e97739f2b" -dependencies = [ - "indexmap", - "toml_datetime", - "toml_parser", - "winnow", -] - -[[package]] -name = "toml_parser" -version = "1.1.2+spec-1.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a2abe9b86193656635d2411dc43050282ca48aa31c2451210f4202550afb7526" -dependencies = [ - "winnow", -] - [[package]] name = "tonic" version = "0.14.5" @@ -3245,11 +3505,13 @@ dependencies = [ "socket2", "sync_wrapper", "tokio", + "tokio-rustls", "tokio-stream", "tower", "tower-layer", "tower-service", "tracing", + "webpki-roots", ] [[package]] @@ -3449,6 +3711,15 @@ version = "1.0.24" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75" +[[package]] +name = "unicode-normalization" +version = "0.1.25" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5fd4f6878c9cb28d874b009da9e8d183b5abc80117c40bbd187a1fde336be6e8" +dependencies = [ + "tinyvec", +] + [[package]] name = "unicode-segmentation" version = "1.13.2" @@ -3478,16 +3749,16 @@ dependencies = [ ] [[package]] -name = "utf8-ranges" -version = "1.0.5" +name = "untrusted" +version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7fcfc827f90e53a02eaef5e535ee14266c1d569214c6aa70133a624d8a3164ba" +checksum = "8ecb6da28b8a351d773b68d5825ac39017e680750f980f3a1a85cd8dd28a47c1" [[package]] -name = "utf8-width" -version = "0.1.8" +name = "utf8-ranges" +version = "1.0.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1292c0d970b54115d14f2492fe0170adf21d68a1de108eebc51c1df4f346a091" +checksum = "7fcfc827f90e53a02eaef5e535ee14266c1d569214c6aa70133a624d8a3164ba" [[package]] name = "utf8parse" @@ -3524,9 +3795,9 @@ checksum = "ba73ea9cf16a25df0c8caa16c51acb937d5712a8429db78a3ee29d5dcacd3a65" [[package]] name = "varint-rs" -version = "2.2.0" +version = "2.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f54a172d0620933a27a4360d3db3e2ae0dd6cceae9730751a036bbf182c4b23" +checksum = "bfa6c38708f6257f1ec2ca7e5a11f9bbf58a27d7060078b6b333624968183d96" [[package]] name = "version_check" @@ -3646,6 +3917,15 @@ dependencies = [ "semver", ] +[[package]] +name = "webpki-roots" +version = "1.0.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7dcd9d09a39985f5344844e66b0c530a33843579125f23e21e9f0f220850f22a" +dependencies = [ + "rustls-pki-types", +] + [[package]] name = "whatlang" version = "0.18.0" @@ -3736,6 +4016,15 @@ dependencies = [ "windows-link", ] +[[package]] +name = "windows-sys" +version = "0.52.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d" +dependencies = [ + "windows-targets", +] + [[package]] name = "windows-sys" version = "0.59.0" @@ -3818,15 +4107,6 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec" -[[package]] -name = "winnow" -version = "1.0.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09dac053f1cd375980747450bfc7250c264eaae0583872e845c0c7cd578872b5" -dependencies = [ - "memchr", -] - [[package]] name = "wit-bindgen" version = "0.51.0" @@ -3916,12 +4196,14 @@ dependencies = [ ] [[package]] -name = "wyz" -version = "0.5.1" +name = "x25519-dalek" +version = "2.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "05f360fc0b24296329c78fda852a1e9ae82de9cf7b27dae4b7f62f118f77b9ed" +checksum = "c7e468321c81fb07fa7f4c636c3972b9100f0346e5b6a9f2bd0603a52f7ed277" dependencies = [ - "tap", + "curve25519-dalek", + "rand_core 0.6.4", + "zeroize", ] [[package]] @@ -3951,35 +4233,27 @@ dependencies = [ ] [[package]] -name = "zmij" -version = "1.0.21" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b8848ee67ecc8aedbaf3e4122217aff892639231befc6a1b58d29fff4c2cabaa" - -[[package]] -name = "zstd" -version = "0.13.3" +name = "zeroize" +version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e91ee311a569c327171651566e07972200e76fcfe2242a4fa446149a3881c08a" +checksum = "e13c156562582aa81c60cb29407084cdb54c4164760106ab78e6c5b0858cf64e" dependencies = [ - "zstd-safe", + "zeroize_derive", ] [[package]] -name = "zstd-safe" -version = "7.2.4" +name = "zeroize_derive" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f49c4d5f0abb602a93fb8736af2a4f4dd9512e36f7f570d66e65ff867ed3b9d" +checksum = "3c50655cbb0fe3fc43170059e702f1ce5e19b84cec58dc87b037a09935c2f328" dependencies = [ - "zstd-sys", + "proc-macro2", + "quote", + "syn 2.0.117", ] [[package]] -name = "zstd-sys" -version = "2.0.16+zstd.1.5.7" +name = "zmij" +version = "1.0.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "91e19ebc2adc8f83e43039e79776e3fda8ca919132d68a1fed6a5faca2683748" -dependencies = [ - "cc", - "pkg-config", -] +checksum = "b8848ee67ecc8aedbaf3e4122217aff892639231befc6a1b58d29fff4c2cabaa" From 5309c8e3bbb28645fe121985e7bae7485b429a2c Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 23:44:28 +0300 Subject: [PATCH 29/56] build: track the v0.5.4 server release The submodule, the CI service image and the demo compose file all move to v0.5.4, pinned by its digest. That release carries four engine fixes this branch has been working around. --- .github/workflows/ci.yml | 6 +++--- coordinode-embedded/Cargo.lock | 20 ++++++++++---------- coordinode-rs | 2 +- demo/README.md | 2 +- demo/docker-compose.yml | 4 ++-- 5 files changed, 17 insertions(+), 17 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 7f6754c..484981b 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -105,10 +105,10 @@ jobs: services: coordinode: # Pinned by digest, not by tag: the proto submodule pins a server - # version, and a tag can be re-pushed, so `:0.5.3` alone does not name - # one fixed server. The digest below is 0.5.3; bump both together with + # version, and a tag can be re-pushed, so `:0.5.4` alone does not name + # one fixed server. The digest below is 0.5.4; bump both together with # the submodule. - image: ghcr.io/structured-world/coordinode@sha256:c79a2b6448cd76e9af4a772a324e586a739fb8d241d899b252206a0bde593a11 + image: ghcr.io/structured-world/coordinode@sha256:b658e07ca1c03fb4a8e92929d35f0640677b219c3d6b73ff9efd68543be0a323 ports: - 7080:7080 - 7084:7084 diff --git a/coordinode-embedded/Cargo.lock b/coordinode-embedded/Cargo.lock index 12a0df2..e913913 100644 --- a/coordinode-embedded/Cargo.lock +++ b/coordinode-embedded/Cargo.lock @@ -525,7 +525,7 @@ dependencies = [ [[package]] name = "coordinode-cluster" -version = "0.5.3" +version = "0.5.4" dependencies = [ "coordinode-storage", "parking_lot", @@ -538,7 +538,7 @@ dependencies = [ [[package]] name = "coordinode-core" -version = "0.5.3" +version = "0.5.4" dependencies = [ "bytes", "rmp", @@ -554,7 +554,7 @@ dependencies = [ [[package]] name = "coordinode-embed" -version = "0.5.3" +version = "0.5.4" dependencies = [ "coordinode-core", "coordinode-lsm-tree", @@ -613,7 +613,7 @@ dependencies = [ [[package]] name = "coordinode-modality" -version = "0.5.3" +version = "0.5.4" dependencies = [ "coordinode-core", "coordinode-lsm-tree", @@ -629,7 +629,7 @@ dependencies = [ [[package]] name = "coordinode-query" -version = "0.5.3" +version = "0.5.4" dependencies = [ "coordinode-cluster", "coordinode-core", @@ -655,7 +655,7 @@ dependencies = [ [[package]] name = "coordinode-raft" -version = "0.5.3" +version = "0.5.4" dependencies = [ "bytes", "coordinode-core", @@ -678,7 +678,7 @@ dependencies = [ [[package]] name = "coordinode-search" -version = "0.5.3" +version = "0.5.4" dependencies = [ "aes-gcm", "coordinode-storage", @@ -695,7 +695,7 @@ dependencies = [ [[package]] name = "coordinode-storage" -version = "0.5.3" +version = "0.5.4" dependencies = [ "byteorder-lite", "bytes", @@ -722,7 +722,7 @@ dependencies = [ [[package]] name = "coordinode-vector" -version = "0.5.3" +version = "0.5.4" dependencies = [ "coordinode-core", "coordinode-storage", @@ -737,7 +737,7 @@ dependencies = [ [[package]] name = "coordinode-wire" -version = "0.5.3" +version = "0.5.4" dependencies = [ "bytes", "prost", diff --git a/coordinode-rs b/coordinode-rs index 9200dbe..adde7c5 160000 --- a/coordinode-rs +++ b/coordinode-rs @@ -1 +1 @@ -Subproject commit 9200dbebca2e3664c4fcb05568caba6209f2acd0 +Subproject commit adde7c5e963b0cd21b8c72a624719d7d2b445bea diff --git a/demo/README.md b/demo/README.md index 3158ca5..359f924 100644 --- a/demo/README.md +++ b/demo/README.md @@ -15,7 +15,7 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. > **Note:** First run installs `coordinode-embedded` from source (Rust build, ~5 min). > Subsequent runs use Colab's pip cache. > The embedded Colab install is pinned to a specific commit that bundles coordinode-rs v0.4.1; the Colab notebook links above target `main`. -> The Docker Compose stack below pins the CoordiNode **server** image v0.5.3 by +> The Docker Compose stack below pins the CoordiNode **server** image v0.5.4 by > digest. Do not move it below that: 0.5.1 crashes its Raft core when the oplog > rolls a segment that already exists, and a single-node stack never regains > leadership afterwards. diff --git a/demo/docker-compose.yml b/demo/docker-compose.yml index 4444b30..f27ffe4 100644 --- a/demo/docker-compose.yml +++ b/demo/docker-compose.yml @@ -4,8 +4,8 @@ services: # COORDINODE_IMAGE at a locally built tag to try a server build before it # is published. # Digest-pinned so a re-pushed tag cannot change the demo underneath - # you; this one is 0.5.3. Override COORDINODE_IMAGE to try another. - image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode@sha256:c79a2b6448cd76e9af4a772a324e586a739fb8d241d899b252206a0bde593a11} + # you; this one is 0.5.4. Override COORDINODE_IMAGE to try another. + image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode@sha256:b658e07ca1c03fb4a8e92929d35f0640677b219c3d6b73ff9efd68543be0a323} container_name: demo-coordinode ports: - "127.0.0.1:37080:7080" # gRPC (native API) — localhost-only From 9e1f5c2273370bb16dc2a3ccf07adb10bf002494 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Sun, 30 Aug 2026 23:44:38 +0300 Subject: [PATCH 30/56] refactor(demo): drop the workarounds v0.5.4 makes unnecessary Relationship types were pulled out and tallied in Python because an aggregate handed back a NULL key; the seed notebook groups them in the query now. `find_related` constrained only the endpoints, because a predicate over nodes(p) matched nothing when path elements had no properties to read. It checks every node on the path now, so a path crossing another session's node is refused rather than reached through its ends. Both were verified against a running v0.5.4 before the code changed, and all five notebooks execute against it. --- demo/notebooks/00_seed_data.ipynb | 27 ++----------------------- demo/notebooks/03_langgraph_agent.ipynb | 12 +++++------ 2 files changed, 7 insertions(+), 32 deletions(-) diff --git a/demo/notebooks/00_seed_data.ipynb b/demo/notebooks/00_seed_data.ipynb index 818cba9..91a8e68 100644 --- a/demo/notebooks/00_seed_data.ipynb +++ b/demo/notebooks/00_seed_data.ipynb @@ -340,30 +340,7 @@ "id": "12", "metadata": {}, "outputs": [], - "source": [ - "from collections import Counter\n", - "\n", - "print(\"Node counts:\")\n", - "for label in [\"Person\", \"Company\", \"Technology\"]:\n", - " rows = client.cypher(\n", - " f\"MATCH (n:{label} {{demo: true, demo_tag: $tag}}) RETURN count(n) AS count\",\n", - " params={\"tag\": DEMO_TAG},\n", - " )\n", - " print(f\" {label:15s} {rows[0]['count']}\")\n", - "\n", - "# Counted in Python on purpose. `RETURN type(r) AS rel, count(*) AS n`\n", - "# groups correctly but hands back a NULL key on the server this demo\n", - "# pins, and moving type(r) into a preceding WITH does not help. Pulling\n", - "# the types and tallying them here keeps the output honest.\n", - "rels = client.cypher(\n", - " \"MATCH (a {demo: true, demo_tag: $tag})-[r]->(b {demo: true, demo_tag: $tag}) RETURN type(r) AS rel\",\n", - " params={\"tag\": DEMO_TAG},\n", - ")\n", - "counts = Counter(r[\"rel\"] for r in rels)\n", - "print(\"\\nRelationship counts:\")\n", - "for rel, cnt in sorted(counts.items(), key=lambda x: -x[1]):\n", - " print(f\" {rel:20s} {cnt}\")" - ] + "source": "print(\"Node counts:\")\nfor label in [\"Person\", \"Company\", \"Technology\"]:\n rows = client.cypher(\n f\"MATCH (n:{label} {{demo: true, demo_tag: $tag}}) RETURN count(n) AS count\",\n params={\"tag\": DEMO_TAG},\n )\n print(f\" {label:15s} {rows[0]['count']}\")\n\nrels = client.cypher(\n \"MATCH (a {demo: true, demo_tag: $tag})-[r]->(b {demo: true, demo_tag: $tag}) \"\n \"RETURN type(r) AS rel, count(*) AS n ORDER BY n DESC, rel\",\n params={\"tag\": DEMO_TAG},\n)\nprint(\"\\nRelationship counts:\")\nfor row in rels:\n print(f\" {row['rel']:20s} {row['n']}\")" }, { "cell_type": "code", @@ -419,4 +396,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} +} \ No newline at end of file diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 46a30da..63eb0f4 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -323,14 +323,12 @@ "def find_related(entity_name: str, depth: int = 1) -> str:\n", " \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n", " safe_depth = max(1, min(int(depth), 3))\n", - " # Note: session constraint is on both endpoints (n, m). The obvious\n", - " # tightening, MATCH p=... WHERE ALL(x IN nodes(p) WHERE x.session = $sess),\n", - " # matches nothing on the pinned server: nodes(p) yields bare ids, so\n", - " # x.session is NULL for every element and the predicate is never true.\n", - " # In practice, session isolation holds because all nodes are MERGE'd with\n", - " # their session scope, so cross-session paths cannot form.\n", + " # Every node on the path is checked, not just the endpoints. Nodes carry\n", + " # their session from `save_fact`, so a path through a node belonging to\n", + " # another session is refused rather than returned by way of its ends.\n", " rows = client.cypher(\n", - " f\"MATCH (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity {{session: $sess}}) \"\n", + " f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n", + " \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n", " \"RETURN DISTINCT m.name AS related LIMIT 20\",\n", " params={\"name\": entity_name, \"sess\": SESSION},\n", " )\n", From 5673cf667570f3963afccae487125437b6835036 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 12:14:23 +0300 Subject: [PATCH 31/56] build: track the v0.5.5 server release The submodule, the CI service image and the demo compose file move to v0.5.5, pinned by its digest. That release carries the last two engine fixes this branch was working around, so the relationship properties the integration packages upsert alongside an edge now survive: notebook 01 reads back the `since` it wrote instead of NULL. --- .github/workflows/ci.yml | 6 +++--- coordinode-rs | 2 +- demo/README.md | 2 +- demo/docker-compose.yml | 4 ++-- 4 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 484981b..43fd733 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -105,10 +105,10 @@ jobs: services: coordinode: # Pinned by digest, not by tag: the proto submodule pins a server - # version, and a tag can be re-pushed, so `:0.5.4` alone does not name - # one fixed server. The digest below is 0.5.4; bump both together with + # version, and a tag can be re-pushed, so `:0.5.5` alone does not name + # one fixed server. The digest below is 0.5.5; bump both together with # the submodule. - image: ghcr.io/structured-world/coordinode@sha256:b658e07ca1c03fb4a8e92929d35f0640677b219c3d6b73ff9efd68543be0a323 + image: ghcr.io/structured-world/coordinode@sha256:8d3554be7680aa2cea7b6e773037aee97513865f4698b6df0ffc2daf845c42b8 ports: - 7080:7080 - 7084:7084 diff --git a/coordinode-rs b/coordinode-rs index adde7c5..c4488d7 160000 --- a/coordinode-rs +++ b/coordinode-rs @@ -1 +1 @@ -Subproject commit adde7c5e963b0cd21b8c72a624719d7d2b445bea +Subproject commit c4488d7315128e797a3e27228f0bf010b207610e diff --git a/demo/README.md b/demo/README.md index 359f924..a44a3ff 100644 --- a/demo/README.md +++ b/demo/README.md @@ -15,7 +15,7 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. > **Note:** First run installs `coordinode-embedded` from source (Rust build, ~5 min). > Subsequent runs use Colab's pip cache. > The embedded Colab install is pinned to a specific commit that bundles coordinode-rs v0.4.1; the Colab notebook links above target `main`. -> The Docker Compose stack below pins the CoordiNode **server** image v0.5.4 by +> The Docker Compose stack below pins the CoordiNode **server** image v0.5.5 by > digest. Do not move it below that: 0.5.1 crashes its Raft core when the oplog > rolls a segment that already exists, and a single-node stack never regains > leadership afterwards. diff --git a/demo/docker-compose.yml b/demo/docker-compose.yml index f27ffe4..31763d5 100644 --- a/demo/docker-compose.yml +++ b/demo/docker-compose.yml @@ -4,8 +4,8 @@ services: # COORDINODE_IMAGE at a locally built tag to try a server build before it # is published. # Digest-pinned so a re-pushed tag cannot change the demo underneath - # you; this one is 0.5.4. Override COORDINODE_IMAGE to try another. - image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode@sha256:b658e07ca1c03fb4a8e92929d35f0640677b219c3d6b73ff9efd68543be0a323} + # you; this one is 0.5.5. Override COORDINODE_IMAGE to try another. + image: ${COORDINODE_IMAGE:-ghcr.io/structured-world/coordinode@sha256:8d3554be7680aa2cea7b6e773037aee97513865f4698b6df0ffc2daf845c42b8} container_name: demo-coordinode ports: - "127.0.0.1:37080:7080" # gRPC (native API) — localhost-only From 10209753907941cf2ce74f2327ac6e826ff668b3 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 12:14:37 +0300 Subject: [PATCH 32/56] build(embedded): record the engine versions the submodule now pins The lock still named 0.5.4 for the workspace crates after the submodule moved to v0.5.5, so a build regenerated it every time. --- coordinode-embedded/Cargo.lock | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/coordinode-embedded/Cargo.lock b/coordinode-embedded/Cargo.lock index e913913..43cddb4 100644 --- a/coordinode-embedded/Cargo.lock +++ b/coordinode-embedded/Cargo.lock @@ -525,7 +525,7 @@ dependencies = [ [[package]] name = "coordinode-cluster" -version = "0.5.4" +version = "0.5.5" dependencies = [ "coordinode-storage", "parking_lot", @@ -538,7 +538,7 @@ dependencies = [ [[package]] name = "coordinode-core" -version = "0.5.4" +version = "0.5.5" dependencies = [ "bytes", "rmp", @@ -554,7 +554,7 @@ dependencies = [ [[package]] name = "coordinode-embed" -version = "0.5.4" +version = "0.5.5" dependencies = [ "coordinode-core", "coordinode-lsm-tree", @@ -613,7 +613,7 @@ dependencies = [ [[package]] name = "coordinode-modality" -version = "0.5.4" +version = "0.5.5" dependencies = [ "coordinode-core", "coordinode-lsm-tree", @@ -629,7 +629,7 @@ dependencies = [ [[package]] name = "coordinode-query" -version = "0.5.4" +version = "0.5.5" dependencies = [ "coordinode-cluster", "coordinode-core", @@ -655,7 +655,7 @@ dependencies = [ [[package]] name = "coordinode-raft" -version = "0.5.4" +version = "0.5.5" dependencies = [ "bytes", "coordinode-core", @@ -678,7 +678,7 @@ dependencies = [ [[package]] name = "coordinode-search" -version = "0.5.4" +version = "0.5.5" dependencies = [ "aes-gcm", "coordinode-storage", @@ -695,7 +695,7 @@ dependencies = [ [[package]] name = "coordinode-storage" -version = "0.5.4" +version = "0.5.5" dependencies = [ "byteorder-lite", "bytes", @@ -722,7 +722,7 @@ dependencies = [ [[package]] name = "coordinode-vector" -version = "0.5.4" +version = "0.5.5" dependencies = [ "coordinode-core", "coordinode-storage", @@ -737,7 +737,7 @@ dependencies = [ [[package]] name = "coordinode-wire" -version = "0.5.4" +version = "0.5.5" dependencies = [ "bytes", "prost", From 1f2b843f0aba9342210f53ad19984953a07a85d1 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:00:55 +0300 Subject: [PATCH 33/56] fix(demo): reject a session scope that OR or NOT undoes The agent guard accepted any WHERE that mentioned the session equality, so a predicate could carry it and still return every session's rows: WHERE n.session = $sess OR true true for every row WHERE NOT n.session = $sess exactly the other sessions WHERE n.session = $sess AND a OR b b alone satisfies it A WHERE relied on for scope is now split on the OR keywords outside any bracket, and every part has to carry the equality itself; NOT anywhere in such a predicate is refused rather than interpreted, which would need an AST. Scope written into the pattern is untouched by this: {session: $sess} cannot be undone by a predicate, so those queries keep the full run of OR and NOT. A bracketed OR beside the equality stays accepted, so the common "scoped AND (a OR b)" is not a false refusal. The three bypasses join the guard's checked list, which runs on every execution, along with a map literal in RETURN that the clause split already refuses. --- demo/notebooks/03_langgraph_agent.ipynb | 256 +----------------------- 1 file changed, 4 insertions(+), 252 deletions(-) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 63eb0f4..0e01e50 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -160,267 +160,19 @@ "id": "6", "metadata": {}, "outputs": [], - "source": [ - "import os, re, uuid\n", - "from langchain_core.tools import tool\n", - "\n", - "SESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n", - "\n", - "_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n", - "# Regex guards for query_facts (demo safety guard).\n", - "_WRITE_CLAUSE_RE = re.compile(\n", - " r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n", - " re.IGNORECASE | re.DOTALL,\n", - ")\n", - "# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n", - "# thing keeping one session out of another's facts, so it is built to refuse\n", - "# rather than to approve. Every way a query slipped past an earlier version:\n", - "#\n", - "# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n", - "# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n", - "# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n", - "# WHERE true /* n.session = $sess */ commented out, so ignored\n", - "# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n", - "# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n", - "#\n", - "# So: quoted spans and comments are blanked in one left-to-right pass, with\n", - "# backslash escapes honoured, and then EVERY MATCH has to carry its own scope.\n", - "# The last line is why per-clause rather than \"somewhere in the query\": one\n", - "# scoped pattern used to vouch for an unscoped one beside it.\n", - "#\n", - "# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n", - "# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n", - "# node, because proving that needs the AST. A guard that refuses a valid\n", - "# query costs the agent one retry; one that admits an invalid query leaks.\n", - "_MASKED_RE = re.compile(\n", - " r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n", - " re.DOTALL,\n", - ")\n", - "_CLAUSE_RE = re.compile(\n", - " r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n", - " r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n", - " re.IGNORECASE,\n", - ")\n", - "_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n", - "_SESSION_EQ_RE = re.compile(r\"\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n", - "_SESSION_NODE_SCOPE_RE = re.compile(\n", - " r\"\\([^()]*\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\",\n", - " re.IGNORECASE | re.DOTALL,\n", - ")\n", - "\n", - "\n", - "def _blank(match: re.Match) -> str:\n", - " \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n", - " text = match.group(0)\n", - " return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n", - "\n", - "\n", - "def _has_top_level_comma(pattern: str) -> bool:\n", - " \"\"\"Whether the pattern holds a comma outside any bracket.\n", - "\n", - " That comma separates two independent patterns, and only one of them may\n", - " be scoped. Quoted spans are already blanked, so no comma here is data.\n", - " \"\"\"\n", - " depth = 0\n", - " for char in pattern:\n", - " if char in \"([{\":\n", - " depth += 1\n", - " elif char in \")]}\":\n", - " depth -= 1\n", - " elif char == \",\" and depth == 0:\n", - " return True\n", - " return False\n", - "\n", - "\n", - "def _is_session_scoped(query: str) -> bool:\n", - " \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n", - " bare = _MASKED_RE.sub(_blank, query)\n", - "\n", - " # A clause runs to whichever clause opens next. WHERE is not in that list,\n", - " # so a MATCH clause carries its own WHERE and nothing else: a predicate\n", - " # sitting in RETURN falls outside the MATCH it appears to qualify.\n", - " bodies = []\n", - " for match in _CLAUSE_RE.finditer(bare):\n", - " keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n", - " if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n", - " continue\n", - " nxt = _CLAUSE_RE.search(bare, match.end())\n", - " bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n", - "\n", - " if not bodies:\n", - " return False\n", - "\n", - " for body in bodies:\n", - " where = _WHERE_RE.search(body)\n", - " pattern, predicate = (\n", - " (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n", - " )\n", - " if _has_top_level_comma(pattern):\n", - " return False\n", - " if not (_SESSION_NODE_SCOPE_RE.search(pattern) or _SESSION_EQ_RE.search(predicate)):\n", - " return False\n", - " return True\n", - "\n", - "\n", - "@tool\n", - "def save_fact(subject: str, relation: str, obj: str) -> str:\n", - " \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n", - " Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n", - " rel_type = relation.upper().replace(\" \", \"_\")\n", - " # Validate rel_type before interpolating into Cypher to prevent injection.\n", - " if not _REL_TYPE_RE.fullmatch(rel_type):\n", - " return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n", - " client.cypher(\n", - " f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n", - " f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n", - " f\"MERGE (a)-[r:{rel_type}]->(b)\",\n", - " params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n", - " )\n", - " return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n", - "\n", - "\n", - "@tool\n", - "def query_facts(cypher: str) -> str:\n", - " \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n", - " Every MATCH must scope itself via WHERE .session = $sess\n", - " or a node pattern {session: $sess}.\"\"\"\n", - " q = cypher.strip()\n", - " if _WRITE_CLAUSE_RE.search(q):\n", - " return \"Only read-only Cypher is allowed in query_facts.\"\n", - " # Each MATCH must carry its own scope, in its own pattern or its own WHERE.\n", - " if not _is_session_scoped(q):\n", - " return (\n", - " \"Every MATCH must scope itself to the current session, with either \"\n", - " \"WHERE .session = $sess or {session: $sess} in its pattern. \"\n", - " \"Independent patterns in one MATCH (comma-separated) are refused: \"\n", - " \"write them as separate scoped MATCH clauses.\"\n", - " )\n", - " # Enforce a result cap so agents cannot dump the entire graph.\n", - " # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n", - " # or append LIMIT 20 when no LIMIT clause is present.\n", - " _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n", - "\n", - " def _cap_limit(m):\n", - " return f\"LIMIT {min(int(m.group(1)), 20)}\"\n", - "\n", - " # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n", - " extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n", - " if extra_params:\n", - " return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n", - " if _LIMIT_AT_END_RE.search(q):\n", - " q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n", - " elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n", - " # Respect caller-provided non-terminal LIMIT clauses;\n", - " # appending a second LIMIT would produce invalid Cypher.\n", - " pass\n", - " else:\n", - " q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n", - " rows = client.cypher(q, params={\"sess\": SESSION})\n", - " return str(rows) if rows else \"No results\"\n", - "\n", - "\n", - "@tool\n", - "def find_related(entity_name: str, depth: int = 1) -> str:\n", - " \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n", - " safe_depth = max(1, min(int(depth), 3))\n", - " # Every node on the path is checked, not just the endpoints. Nodes carry\n", - " # their session from `save_fact`, so a path through a node belonging to\n", - " # another session is refused rather than returned by way of its ends.\n", - " rows = client.cypher(\n", - " f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n", - " \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n", - " \"RETURN DISTINCT m.name AS related LIMIT 20\",\n", - " params={\"name\": entity_name, \"sess\": SESSION},\n", - " )\n", - " if not rows:\n", - " return f\"No related entities found for {entity_name}\"\n", - " return \"\\n\".join(r[\"related\"] for r in rows)\n", - "\n", - "\n", - "@tool\n", - "def list_all_facts() -> str:\n", - " \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n", - " rows = client.cypher(\n", - " \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n", - " \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n", - " params={\"sess\": SESSION},\n", - " )\n", - " if not rows:\n", - " return \"No facts stored yet\"\n", - " return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n", - "\n", - "\n", - "tools = [save_fact, query_facts, find_related, list_all_facts]\n", - "print(f\"Session: {SESSION}\")\n", - "print(\"Tools:\", [t.name for t in tools])" - ] + "source": "import os, re, uuid\nfrom langchain_core.tools import tool\n\nSESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n# Regex guards for query_facts (demo safety guard).\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n# thing keeping one session out of another's facts, so it is built to refuse\n# rather than to approve. Every way a query slipped past an earlier version:\n#\n# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n# WHERE true /* n.session = $sess */ commented out, so ignored\n# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n# WHERE n.session = $sess OR true disjoined away\n# WHERE NOT n.session = $sess inverted into its opposite\n#\n# So: quoted spans and comments are blanked in one left-to-right pass, with\n# backslash escapes honoured, then EVERY MATCH has to carry its own scope, and\n# a scope that lives in a WHERE has to actually narrow the rows. The MATCH-by-\n# MATCH rule is why this is per-clause rather than \"somewhere in the query\":\n# one scoped pattern used to vouch for an unscoped one beside it.\n#\n# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n# node, because proving that needs the AST. A guard that refuses a valid\n# query costs the agent one retry; one that admits an invalid query leaks.\n_MASKED_RE = re.compile(\n r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n re.DOTALL,\n)\n_CLAUSE_RE = re.compile(\n r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n re.IGNORECASE,\n)\n_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n_SESSION_EQ_RE = re.compile(r\"\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n_SESSION_NODE_SCOPE_RE = re.compile(\n r\"\\([^()]*\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n_NOT_RE = re.compile(r\"\\bNOT\\b\", re.IGNORECASE)\n# Brackets and the OR keyword, so a predicate can be walked with a depth count.\n_OR_SCAN_RE = re.compile(r\"[([{]|[)\\]}]|\\bOR\\b\", re.IGNORECASE)\n\n\ndef _blank(match: re.Match) -> str:\n \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n text = match.group(0)\n return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n\n\ndef _has_top_level_comma(pattern: str) -> bool:\n \"\"\"Whether the pattern holds a comma outside any bracket.\n\n That comma separates two independent patterns, and only one of them may\n be scoped. Quoted spans are already blanked, so no comma here is data.\n \"\"\"\n depth = 0\n for char in pattern:\n if char in \"([{\":\n depth += 1\n elif char in \")]}\":\n depth -= 1\n elif char == \",\" and depth == 0:\n return True\n return False\n\n\ndef _top_level_or_parts(predicate: str) -> list[str]:\n \"\"\"Split a predicate on the OR keywords that sit outside every bracket.\n\n AND binds tighter than OR, so the predicate holds whenever any one of\n these parts holds. A part without the session equality therefore admits\n rows on its own, whatever the parts beside it say: `n.session = $sess OR\n true` filters nothing at all. Each part has to carry the scope itself.\n \"\"\"\n parts, depth, start = [], 0, 0\n for match in _OR_SCAN_RE.finditer(predicate):\n token = match.group(0)\n if token in \"([{\":\n depth += 1\n elif token in \")]}\":\n depth -= 1\n elif depth == 0: # an OR joining two top-level parts\n parts.append(predicate[start : match.start()])\n start = match.end()\n parts.append(predicate[start:])\n return parts\n\n\ndef _is_session_scoped(query: str) -> bool:\n \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n bare = _MASKED_RE.sub(_blank, query)\n\n # A clause runs to whichever clause opens next. WHERE is not in that list,\n # so a MATCH clause carries its own WHERE and nothing else: a predicate\n # sitting in RETURN falls outside the MATCH it appears to qualify.\n bodies = []\n for match in _CLAUSE_RE.finditer(bare):\n keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n continue\n nxt = _CLAUSE_RE.search(bare, match.end())\n bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n\n if not bodies:\n return False\n\n for body in bodies:\n where = _WHERE_RE.search(body)\n pattern, predicate = (\n (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n )\n if _has_top_level_comma(pattern):\n return False\n if _SESSION_NODE_SCOPE_RE.search(pattern):\n continue\n # Scope in the WHERE instead. Being present is not enough there: NOT\n # turns the equality into its opposite, and an OR branch without it\n # returns rows regardless of it. Both are refused rather than read,\n # which needs an AST. A query wanting either writes `{session: $sess}`\n # into its pattern, where the scope is structural and cannot be undone.\n if _NOT_RE.search(predicate):\n return False\n if not all(_SESSION_EQ_RE.search(part) for part in _top_level_or_parts(predicate)):\n return False\n return True\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n # Validate rel_type before interpolating into Cypher to prevent injection.\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n Every MATCH must scope itself via WHERE .session = $sess\n or a node pattern {session: $sess}.\"\"\"\n q = cypher.strip()\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n # Each MATCH must carry its own scope, in its own pattern or its own WHERE.\n if not _is_session_scoped(q):\n return (\n \"Every MATCH must scope itself to the current session, with either \"\n \"WHERE .session = $sess or {session: $sess} in its pattern. \"\n \"Independent patterns in one MATCH (comma-separated) are refused: \"\n \"write them as separate scoped MATCH clauses. A WHERE carrying the \"\n \"scope may not use OR or NOT; put {session: $sess} in the pattern \"\n \"instead and the rest of the WHERE is free.\"\n )\n # Enforce a result cap so agents cannot dump the entire graph.\n # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n # or append LIMIT 20 when no LIMIT clause is present.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n if extra_params:\n return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # Respect caller-provided non-terminal LIMIT clauses;\n # appending a second LIMIT would produce invalid Cypher.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n rows = client.cypher(q, params={\"sess\": SESSION})\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n # Every node on the path is checked, not just the endpoints. Nodes carry\n # their session from `save_fact`, so a path through a node belonging to\n # another session is refused rather than returned by way of its ends.\n rows = client.cypher(\n f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name, \"sess\": SESSION},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n params={\"sess\": SESSION},\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(f\"Session: {SESSION}\")\nprint(\"Tools:\", [t.name for t in tools])" }, { "cell_type": "markdown", "id": "guard-581f55ed", "metadata": {}, - "source": [ - "### The guard, checked\n", - "\n", - "`query_facts` runs whatever Cypher the model writes, so the scope check is the\n", - "only thing keeping one session out of another's facts. The queries below are\n", - "the ones that fooled earlier versions of it, and each has to be refused now: a\n", - "predicate placed in `RETURN` rather than `WHERE`, one hidden in a\n", - "backtick-quoted alias, one inside a string literal, one commented out in each\n", - "of Cypher's two comment forms, one that ends its string early with an escaped\n", - "quote, and three where a single scoped pattern is used to vouch for an\n", - "unscoped one beside it. This runs on every execution, so a loosened rule fails\n", - "here rather than in front of a user.\n" - ] + "source": "### The guard, checked\n\n`query_facts` runs whatever Cypher the model writes, so the scope check is the\nonly thing keeping one session out of another's facts. The queries below are\nthe ones that fooled earlier versions of it, and each has to be refused now: a\npredicate placed in `RETURN` rather than `WHERE`, one hidden in a\nbacktick-quoted alias, one inside a string literal, one commented out in each\nof Cypher's two comment forms, one that ends its string early with an escaped\nquote, three where a single scoped pattern is used to vouch for an unscoped\none beside it, and three where the scope is written into the `WHERE` but then\ndisjoined or negated away so that it narrows nothing. Alongside them sit the\nqueries that must keep working, including a bracketed `OR` that leaves the\nscope intact. This runs on every execution, so a loosened rule fails here\nrather than in front of a user.\n" }, { "cell_type": "code", "id": "guard-6f7de8b1", "metadata": {}, - "source": [ - "scoped = [\n", - " \"MATCH (n) WHERE n.session = $sess RETURN n\",\n", - " \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n", - " \"MATCH (n {session: $sess}) RETURN n\",\n", - " \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n", - " \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n", - " # A comment must not swallow the predicate next to it.\n", - " \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n", - " \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n", - " # '//' inside a string opens no comment, and an escaped quote does not\n", - " # end the string early.\n", - " \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n", - " r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n", - "]\n", - "unscoped = [\n", - " \"MATCH (n) RETURN n\",\n", - " \"MATCH (n) WHERE n.session = $other RETURN n\",\n", - " \"MATCH (n {sessionish: $sess}) RETURN n\",\n", - " \"RETURN $sess\",\n", - " # The predicate is in RETURN, not in the WHERE it appears to qualify.\n", - " \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n", - " # The whole predicate is an alias, so it is a name and not a filter.\n", - " \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n", - " # A string literal is data; it restricts nothing.\n", - " \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n", - " # The engine ignores both comment forms, so neither restricts anything.\n", - " \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n", - " \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n", - " # The escape keeps the literal open, so the text after it is still data.\n", - " r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n", - " # One scoped pattern does not vouch for the unscoped one beside it: each\n", - " # of these returns every session's nodes through the unscoped alias.\n", - " \"MATCH (n), (m {session: $sess}) RETURN n\",\n", - " \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n", - " \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n", - "]\n", - "\n", - "wrong = [q for q in scoped if not _is_session_scoped(q)]\n", - "wrong += [q for q in unscoped if _is_session_scoped(q)]\n", - "if wrong:\n", - " raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\n", - "print(f\"guard agrees on all {len(scoped) + len(unscoped)} queries\")" - ], + "source": "scoped = [\n \"MATCH (n) WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n \"MATCH (n {session: $sess}) RETURN n\",\n \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n # A comment must not swallow the predicate next to it.\n \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n # '//' inside a string opens no comment, and an escaped quote does not\n # end the string early.\n \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n # A bracketed OR is one term of the AND, so the scope still holds for\n # every row: refusing this would cost the agent a retry for nothing.\n \"MATCH (n) WHERE n.session = $sess AND (n.a OR n.b) RETURN n\",\n # OR and NOT are free once the scope is in the pattern, where no\n # predicate can undo it.\n \"MATCH (n {session: $sess}) WHERE NOT n.archived OR n.pinned RETURN n\",\n]\nunscoped = [\n \"MATCH (n) RETURN n\",\n \"MATCH (n) WHERE n.session = $other RETURN n\",\n \"MATCH (n {sessionish: $sess}) RETURN n\",\n \"RETURN $sess\",\n # The predicate is in RETURN, not in the WHERE it appears to qualify.\n \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n # Same clause boundary, reached through a map literal: RETURN is where\n # this {session: $sess} sits, so it names a value and filters nothing.\n \"MATCH (n) RETURN n, coalesce({session: $sess}, {}) AS marker\",\n # The whole predicate is an alias, so it is a name and not a filter.\n \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n # A string literal is data; it restricts nothing.\n \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n # The engine ignores both comment forms, so neither restricts anything.\n \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n # The escape keeps the literal open, so the text after it is still data.\n r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n # One scoped pattern does not vouch for the unscoped one beside it: each\n # of these returns every session's nodes through the unscoped alias.\n \"MATCH (n), (m {session: $sess}) RETURN n\",\n \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n # Present in the WHERE but not constraining it: the first is true for\n # every row, the second returns exactly the other sessions' rows, and\n # the third is (scope AND a) OR b, which b alone satisfies.\n \"MATCH (n) WHERE n.session = $sess OR true RETURN n\",\n \"MATCH (n) WHERE NOT n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess AND n.a OR n.b RETURN n\",\n]\n\nwrong = [q for q in scoped if not _is_session_scoped(q)]\nwrong += [q for q in unscoped if _is_session_scoped(q)]\nif wrong:\n raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\nprint(f\"guard agrees on all {len(scoped) + len(unscoped)} queries\")", "execution_count": null, "outputs": [] }, @@ -605,4 +357,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} +} \ No newline at end of file From 4a8b33844406ff07d31c22da2c245987c68c9bba Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:01:11 +0300 Subject: [PATCH 34/56] fix(demo): bootstrap on the client surface, not on import alone Every cell of the 0.5 notebook calls something 0.5 added, but the install cell only asked whether `coordinode` imports. A 0.4 install answers that happily, nothing is installed, and the notebook dies four cells later on AttributeError: 'CoordinodeClient' object has no attribute 'create_nodes_batch', which reads like a broken notebook rather than an old package. The cell now probes for the surface it depends on, upgrades when it is absent, drops the stale module from sys.modules so the re-probe sees the new code, and explains the situation instead of raising a bare AttributeError when the environment mounts an older checkout. A version floor would be the obvious check and is the wrong one: an editable install without hatch-vcs reports 0.0.0 and would reject exactly the checkout the notebook exists to exercise. Installation also goes through the pip-or-uv fallback the other notebooks use, since `python -m pip` is absent in a uv-managed venv. --- demo/notebooks/04_whats_new_in_0_5.ipynb | 40 ++---------------------- 1 file changed, 2 insertions(+), 38 deletions(-) diff --git a/demo/notebooks/04_whats_new_in_0_5.ipynb b/demo/notebooks/04_whats_new_in_0_5.ipynb index 9fdb323..bba3e3a 100644 --- a/demo/notebooks/04_whats_new_in_0_5.ipynb +++ b/demo/notebooks/04_whats_new_in_0_5.ipynb @@ -39,43 +39,7 @@ "execution_count": null, "metadata": {}, "outputs": [], - "source": [ - "import importlib.util, os, subprocess, sys\n", - "\n", - "# (distribution on PyPI, module to import it by).\n", - "pkgs = [\n", - " (\"coordinode\", \"coordinode\"),\n", - " (\"nest_asyncio\", \"nest_asyncio\"),\n", - "]\n", - "\n", - "# Install only what is missing. A checkout mounted into the image, or an\n", - "# editable install, already provides these; pulling them from PyPI there\n", - "# would shadow the very code the notebook is meant to exercise.\n", - "#\n", - "# find_spec raises rather than returning None when a dotted name's parent\n", - "# package is absent, which is exactly the fresh environment this cell exists\n", - "# for: unguarded, it would abort before installing anything.\n", - "def _missing(module: str) -> bool:\n", - " try:\n", - " return importlib.util.find_spec(module) is None\n", - " except ModuleNotFoundError:\n", - " return True\n", - "\n", - "\n", - "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", - "if missing:\n", - " subprocess.run(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *missing],\n", - " check=True,\n", - " timeout=300,\n", - " )\n", - "\n", - "import nest_asyncio\n", - "\n", - "nest_asyncio.apply()\n", - "\n", - "print(\"Ready\")\n" - ], + "source": "import importlib.util, inspect, os, shutil, subprocess, sys\n\n# (distribution on PyPI, module to import it by).\npkgs = [\n (\"coordinode\", \"coordinode\"),\n (\"nest_asyncio\", \"nest_asyncio\"),\n]\n\n# Install only what is missing. A checkout mounted into the image, or an\n# editable install, already provides these; pulling them from PyPI there\n# would shadow the very code the notebook is meant to exercise.\n#\n# find_spec raises rather than returning None when a dotted name's parent\n# package is absent, which is exactly the fresh environment this cell exists\n# for: unguarded, it would abort before installing anything.\ndef _missing(module: str) -> bool:\n try:\n return importlib.util.find_spec(module) is None\n except ModuleNotFoundError:\n return True\n\n\ndef _install(dists: list[str], upgrade: bool = False) -> None:\n \"\"\"Install into this interpreter with whatever installer it has.\n\n Colab ships pip. A uv-managed venv deliberately does not, and there\n `python -m pip` dies with \"No module named pip\" before the notebook\n reaches its first query, so fall back to uv targeting this same\n interpreter rather than uv's own default environment.\n \"\"\"\n flags = [\"-q\", \"-U\"] if upgrade else [\"-q\"]\n if not _missing(\"pip\"):\n cmd = [sys.executable, \"-m\", \"pip\", \"install\", *flags, *dists]\n elif shutil.which(\"uv\"):\n cmd = [\"uv\", \"pip\", \"install\", *flags, \"--python\", sys.executable, *dists]\n else:\n raise RuntimeError(\n f\"Neither pip nor uv is available to install: {', '.join(dists)}\"\n )\n subprocess.run(cmd, check=True, timeout=300)\n\n\ndef _has_0_5_surface() -> bool:\n \"\"\"Whether the installed `coordinode` has the API this notebook calls.\n\n Every cell below is about something 0.5 added, so \"the module imports\" is\n the wrong question: a 0.4 install answers it happily and then fails four\n cells later with an AttributeError about `create_nodes_batch`, which reads\n like a broken notebook rather than an old package. Two probes cover the\n whole set, since these all shipped together: the batch method, and the\n consistency arguments on `cypher`.\n\n Probing the surface rather than comparing `__version__` is deliberate. An\n editable install without hatch-vcs reports 0.0.0, so a version floor would\n reject exactly the checkout this notebook is meant to exercise.\n \"\"\"\n try:\n from coordinode import CoordinodeClient\n except ImportError:\n return False\n if not hasattr(CoordinodeClient, \"create_nodes_batch\"):\n return False\n params = inspect.signature(CoordinodeClient.cypher).parameters\n return {\"read_concern\", \"write_concern\", \"at_timestamp\"}.issubset(params)\n\n\nmissing = [dist for dist, mod in pkgs if _missing(mod)]\nif missing:\n _install(missing)\n\nif not _has_0_5_surface():\n print(\"Installed `coordinode` predates 0.5, upgrading it.\")\n _install([\"coordinode\"], upgrade=True)\n # The old module object stays in sys.modules and would keep answering\n # imports for the rest of the session, so drop it and re-probe.\n for name in [m for m in sys.modules if m == \"coordinode\" or m.startswith(\"coordinode.\")]:\n del sys.modules[name]\n importlib.invalidate_caches()\n if not _has_0_5_surface():\n raise RuntimeError(\n \"`coordinode` still lacks the 0.5 client surface after upgrading. \"\n \"If this environment mounts a checkout or uses an editable install, \"\n \"that source is older than 0.5: update it, or install the released \"\n \"package instead.\"\n )\n\nimport nest_asyncio\n\nnest_asyncio.apply()\n\nprint(\"Ready\")\n", "id": "cell-02-54b3dc" }, { @@ -417,4 +381,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} +} \ No newline at end of file From fa910b1d1c3c32803f62d7c1be3a655ebd26ddf1 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:01:26 +0300 Subject: [PATCH 35/56] docs(client): say why the schema type map mirrors the wire enum The map converting a property dict to a PropertyDefinition covers every member of the wire PropertyType enum and nothing else, which invites the question of why multi-vector is missing when PropertyValue carries one. Because that enum is the list of types a property can be declared as, and multi-vector is not one of them: it and path are shapes a value takes on its way in or out, with no declarable counterpart to map to. A key for either would name an enum member that does not exist. --- coordinode/coordinode/client.py | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/coordinode/coordinode/client.py b/coordinode/coordinode/client.py index 9493e5e..56ad625 100644 --- a/coordinode/coordinode/client.py +++ b/coordinode/coordinode/client.py @@ -534,6 +534,12 @@ def _build_property_definitions( Shared by :meth:`create_label` and :meth:`create_edge_type` to avoid duplicating the type-map and validation logic. """ + # A 1:1 mirror of the wire enum, which is the whole list of types a + # property can be *declared* as. Multi-vector and path are not among + # them: they are shapes a value takes on its way in or out, carried on + # PropertyValue, and no declarable type corresponds to either. Adding + # a key here for one of them would name an enum member that does not + # exist. Extend this only when the enum itself grows. type_map = { "int64": property_type_cls.PROPERTY_TYPE_INT64, "float64": property_type_cls.PROPERTY_TYPE_FLOAT64, From 230eff8dbcc86a7f3ce551732b396e081fca869e Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:31:28 +0300 Subject: [PATCH 36/56] ci: resolve from the lockfile and install wheels only Every uv step resolved freshly and allowed source builds, so a job could install a version nobody had resolved locally and run a dependency's setup.py on the runner. Two flags close both: - --locked fails the job when uv.lock and pyproject disagree, instead of silently resolving something newer mid-run - --no-build installs from wheels only, so no dependency executes code during installation Workspace members still install under --no-build: a clean environment built with both flags runs the unit suite with the same result as before (120 passed, 2 skipped, the embedded pair the job is designed to skip). The wheel smoke-test venv pins numpy, pytest and pytest-timeout to the versions uv.lock already resolves, so it exercises the same stack as the other jobs rather than whatever is newest on PyPI that day. --- .github/workflows/ci.yml | 29 +++++++++++++++++++---------- 1 file changed, 19 insertions(+), 10 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 43fd733..3c117e9 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -16,9 +16,14 @@ jobs: with: python-version: "3.11" - - run: uv sync - - run: uv run ruff check coordinode/ langchain-coordinode/ llama-index-coordinode/ tests/ - - run: uv run ruff format --check coordinode/ langchain-coordinode/ llama-index-coordinode/ tests/ + # --locked fails the job when uv.lock does not match pyproject, so CI + # resolves exactly what a developer resolved rather than picking up a + # newer release mid-run. --no-build installs from wheels only, which + # keeps a dependency's setup.py from executing on the runner. Workspace + # members still install, so the pair costs nothing here. + - run: uv sync --locked --no-build + - run: uv run --locked --no-build ruff check coordinode/ langchain-coordinode/ llama-index-coordinode/ tests/ + - run: uv run --locked --no-build ruff format --check coordinode/ langchain-coordinode/ llama-index-coordinode/ tests/ test: name: Test (Python ${{ matrix.python-version }}) @@ -37,13 +42,13 @@ jobs: python-version: ${{ matrix.python-version }} - name: Install dependencies - run: uv sync --all-packages + run: uv sync --locked --no-build --all-packages - name: Generate proto stubs - run: uv run make proto + run: uv run --locked --no-build make proto - name: Unit tests - run: uv run pytest tests/unit/ -v + run: uv run --locked --no-build pytest tests/unit/ -v build-embedded: name: Build embedded (CI check) @@ -83,7 +88,11 @@ jobs: WHL=$(ls dist/coordinode_embedded-*.whl | head -1) test -n "$WHL" uv venv --python 3.12 /tmp/test-venv - uv pip install --python /tmp/test-venv/bin/python "$WHL" numpy pytest pytest-timeout + # Pinned to the versions uv.lock already resolves for the workspace, + # so this throwaway venv tests against the same stack as the other + # jobs instead of whatever is newest on PyPI that morning. + uv pip install --python /tmp/test-venv/bin/python "$WHL" \ + numpy==2.4.6 pytest==9.1.1 pytest-timeout==2.4.0 OUTPUT=$(/tmp/test-venv/bin/python -m pytest tests/unit/test_hnsw.py -v --strict-markers -ra 2>&1) echo "$OUTPUT" # `-ra` prints a "SKIPPED [N]" short summary header when anything was @@ -138,10 +147,10 @@ jobs: - name: Install + generate proto run: | - uv sync --all-packages - uv run make proto + uv sync --locked --no-build --all-packages + uv run --locked --no-build make proto - name: Integration tests env: COORDINODE_ADDR: "localhost:7080" - run: uv run pytest tests/integration/ -v --timeout=30 + run: uv run --locked --no-build pytest tests/integration/ -v --timeout=30 From 979e676b67c5cba098aafec17c600e40d8f6c95e Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:47:49 +0300 Subject: [PATCH 37/56] fix(demo): tie a WHERE scope to an alias its own MATCH binds The guard accepted any session equality in the WHERE, whatever it named, so a scope belonging to an earlier clause vouched for an unscoped one: MATCH (m {session: $sess}) MATCH (n) WHERE m.session = $sess RETURN n The predicate is true for every row m already satisfies and says nothing about n, so the second MATCH returns every session's nodes. The aliases a pattern binds are now collected, and only an equality naming one of them counts as that MATCH's scope. Both forms join the guard's checked list. The per-MATCH decision moves into a helper, so the outer function is left with masking, splitting the clauses and iterating. --- demo/notebooks/03_langgraph_agent.ipynb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 0e01e50..7dddb8f 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -160,19 +160,19 @@ "id": "6", "metadata": {}, "outputs": [], - "source": "import os, re, uuid\nfrom langchain_core.tools import tool\n\nSESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n# Regex guards for query_facts (demo safety guard).\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n# thing keeping one session out of another's facts, so it is built to refuse\n# rather than to approve. Every way a query slipped past an earlier version:\n#\n# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n# WHERE true /* n.session = $sess */ commented out, so ignored\n# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n# WHERE n.session = $sess OR true disjoined away\n# WHERE NOT n.session = $sess inverted into its opposite\n#\n# So: quoted spans and comments are blanked in one left-to-right pass, with\n# backslash escapes honoured, then EVERY MATCH has to carry its own scope, and\n# a scope that lives in a WHERE has to actually narrow the rows. The MATCH-by-\n# MATCH rule is why this is per-clause rather than \"somewhere in the query\":\n# one scoped pattern used to vouch for an unscoped one beside it.\n#\n# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n# node, because proving that needs the AST. A guard that refuses a valid\n# query costs the agent one retry; one that admits an invalid query leaks.\n_MASKED_RE = re.compile(\n r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n re.DOTALL,\n)\n_CLAUSE_RE = re.compile(\n r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n re.IGNORECASE,\n)\n_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n_SESSION_EQ_RE = re.compile(r\"\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n_SESSION_NODE_SCOPE_RE = re.compile(\n r\"\\([^()]*\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n_NOT_RE = re.compile(r\"\\bNOT\\b\", re.IGNORECASE)\n# Brackets and the OR keyword, so a predicate can be walked with a depth count.\n_OR_SCAN_RE = re.compile(r\"[([{]|[)\\]}]|\\bOR\\b\", re.IGNORECASE)\n\n\ndef _blank(match: re.Match) -> str:\n \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n text = match.group(0)\n return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n\n\ndef _has_top_level_comma(pattern: str) -> bool:\n \"\"\"Whether the pattern holds a comma outside any bracket.\n\n That comma separates two independent patterns, and only one of them may\n be scoped. Quoted spans are already blanked, so no comma here is data.\n \"\"\"\n depth = 0\n for char in pattern:\n if char in \"([{\":\n depth += 1\n elif char in \")]}\":\n depth -= 1\n elif char == \",\" and depth == 0:\n return True\n return False\n\n\ndef _top_level_or_parts(predicate: str) -> list[str]:\n \"\"\"Split a predicate on the OR keywords that sit outside every bracket.\n\n AND binds tighter than OR, so the predicate holds whenever any one of\n these parts holds. A part without the session equality therefore admits\n rows on its own, whatever the parts beside it say: `n.session = $sess OR\n true` filters nothing at all. Each part has to carry the scope itself.\n \"\"\"\n parts, depth, start = [], 0, 0\n for match in _OR_SCAN_RE.finditer(predicate):\n token = match.group(0)\n if token in \"([{\":\n depth += 1\n elif token in \")]}\":\n depth -= 1\n elif depth == 0: # an OR joining two top-level parts\n parts.append(predicate[start : match.start()])\n start = match.end()\n parts.append(predicate[start:])\n return parts\n\n\ndef _is_session_scoped(query: str) -> bool:\n \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n bare = _MASKED_RE.sub(_blank, query)\n\n # A clause runs to whichever clause opens next. WHERE is not in that list,\n # so a MATCH clause carries its own WHERE and nothing else: a predicate\n # sitting in RETURN falls outside the MATCH it appears to qualify.\n bodies = []\n for match in _CLAUSE_RE.finditer(bare):\n keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n continue\n nxt = _CLAUSE_RE.search(bare, match.end())\n bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n\n if not bodies:\n return False\n\n for body in bodies:\n where = _WHERE_RE.search(body)\n pattern, predicate = (\n (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n )\n if _has_top_level_comma(pattern):\n return False\n if _SESSION_NODE_SCOPE_RE.search(pattern):\n continue\n # Scope in the WHERE instead. Being present is not enough there: NOT\n # turns the equality into its opposite, and an OR branch without it\n # returns rows regardless of it. Both are refused rather than read,\n # which needs an AST. A query wanting either writes `{session: $sess}`\n # into its pattern, where the scope is structural and cannot be undone.\n if _NOT_RE.search(predicate):\n return False\n if not all(_SESSION_EQ_RE.search(part) for part in _top_level_or_parts(predicate)):\n return False\n return True\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n # Validate rel_type before interpolating into Cypher to prevent injection.\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n Every MATCH must scope itself via WHERE .session = $sess\n or a node pattern {session: $sess}.\"\"\"\n q = cypher.strip()\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n # Each MATCH must carry its own scope, in its own pattern or its own WHERE.\n if not _is_session_scoped(q):\n return (\n \"Every MATCH must scope itself to the current session, with either \"\n \"WHERE .session = $sess or {session: $sess} in its pattern. \"\n \"Independent patterns in one MATCH (comma-separated) are refused: \"\n \"write them as separate scoped MATCH clauses. A WHERE carrying the \"\n \"scope may not use OR or NOT; put {session: $sess} in the pattern \"\n \"instead and the rest of the WHERE is free.\"\n )\n # Enforce a result cap so agents cannot dump the entire graph.\n # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n # or append LIMIT 20 when no LIMIT clause is present.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n if extra_params:\n return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # Respect caller-provided non-terminal LIMIT clauses;\n # appending a second LIMIT would produce invalid Cypher.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n rows = client.cypher(q, params={\"sess\": SESSION})\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n # Every node on the path is checked, not just the endpoints. Nodes carry\n # their session from `save_fact`, so a path through a node belonging to\n # another session is refused rather than returned by way of its ends.\n rows = client.cypher(\n f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name, \"sess\": SESSION},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n params={\"sess\": SESSION},\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(f\"Session: {SESSION}\")\nprint(\"Tools:\", [t.name for t in tools])" + "source": "import os, re, uuid\nfrom langchain_core.tools import tool\n\nSESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n# Regex guards for query_facts (demo safety guard).\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n# thing keeping one session out of another's facts, so it is built to refuse\n# rather than to approve. Every way a query slipped past an earlier version:\n#\n# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n# WHERE true /* n.session = $sess */ commented out, so ignored\n# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n# WHERE n.session = $sess OR true disjoined away\n# WHERE NOT n.session = $sess inverted into its opposite\n# MATCH (m {session: $sess}) MATCH (n)\n# WHERE m.session = $sess an alias from another clause\n#\n# So: quoted spans and comments are blanked in one left-to-right pass, with\n# backslash escapes honoured, then EVERY MATCH has to carry its own scope, on\n# an alias of its own pattern, in a form no predicate can undo.\n#\n# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n# node, because proving that needs the AST. A guard that refuses a valid\n# query costs the agent one retry; one that admits an invalid query leaks.\n_MASKED_RE = re.compile(\n r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n re.DOTALL,\n)\n_CLAUSE_RE = re.compile(\n r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n re.IGNORECASE,\n)\n_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n# The alias is captured, so the scope can be tied to the pattern it qualifies.\n_SESSION_EQ_RE = re.compile(r\"\\b([A-Za-z_]\\w*)\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n_SESSION_NODE_SCOPE_RE = re.compile(\n r\"\\([^()]*\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Whatever a node or relationship pattern binds: `(n:Entity {...})`, `[r:REL]`.\n# An anonymous `()` or `[*1..3]` binds nothing and yields no alias.\n_PATTERN_ALIAS_RE = re.compile(r\"[(\\[]\\s*([A-Za-z_]\\w*)\")\n_NOT_RE = re.compile(r\"\\bNOT\\b\", re.IGNORECASE)\n# Brackets and the OR keyword, so a predicate can be walked with a depth count.\n_OR_SCAN_RE = re.compile(r\"[([{]|[)\\]}]|\\bOR\\b\", re.IGNORECASE)\n\n\ndef _blank(match: re.Match) -> str:\n \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n text = match.group(0)\n return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n\n\ndef _has_top_level_comma(pattern: str) -> bool:\n \"\"\"Whether the pattern holds a comma outside any bracket.\n\n That comma separates two independent patterns, and only one of them may\n be scoped. Quoted spans are already blanked, so no comma here is data.\n \"\"\"\n depth = 0\n for char in pattern:\n if char in \"([{\":\n depth += 1\n elif char in \")]}\":\n depth -= 1\n elif char == \",\" and depth == 0:\n return True\n return False\n\n\ndef _top_level_or_parts(predicate: str) -> list[str]:\n \"\"\"Split a predicate on the OR keywords that sit outside every bracket.\n\n AND binds tighter than OR, so the predicate holds whenever any one of\n these parts holds. A part without the session equality therefore admits\n rows on its own, whatever the parts beside it say: `n.session = $sess OR\n true` filters nothing at all. Each part has to carry the scope itself.\n \"\"\"\n parts, depth, start = [], 0, 0\n for match in _OR_SCAN_RE.finditer(predicate):\n token = match.group(0)\n if token in \"([{\":\n depth += 1\n elif token in \")]}\":\n depth -= 1\n elif depth == 0: # an OR joining two top-level parts\n parts.append(predicate[start : match.start()])\n start = match.end()\n parts.append(predicate[start:])\n return parts\n\n\ndef _body_is_scoped(pattern: str, predicate: str) -> bool:\n \"\"\"Whether one MATCH restricts the rows it produces to this session.\"\"\"\n # Two independent patterns, of which only one need be scoped.\n if _has_top_level_comma(pattern):\n return False\n # Scope written into the pattern is structural: no predicate can undo it,\n # so OR and NOT are free from here on.\n if _SESSION_NODE_SCOPE_RE.search(pattern):\n return True\n # Scope in the WHERE instead. Being present is not enough there: NOT turns\n # the equality into its opposite, and an OR branch without it returns rows\n # regardless of it. Both are refused rather than read, which needs an AST.\n if _NOT_RE.search(predicate):\n return False\n # The equality also has to constrain THIS pattern. `MATCH (m {session:\n # $sess}) MATCH (n) WHERE m.session = $sess` re-states a scope that already\n # holds and says nothing about n, so every session's nodes come back\n # through n. Only an alias this pattern binds counts.\n aliases = {match.group(1) for match in _PATTERN_ALIAS_RE.finditer(pattern)}\n return all(\n any(match.group(1) in aliases for match in _SESSION_EQ_RE.finditer(part))\n for part in _top_level_or_parts(predicate)\n )\n\n\ndef _is_session_scoped(query: str) -> bool:\n \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n bare = _MASKED_RE.sub(_blank, query)\n\n # A clause runs to whichever clause opens next. WHERE is not in that list,\n # so a MATCH clause carries its own WHERE and nothing else: a predicate\n # sitting in RETURN falls outside the MATCH it appears to qualify.\n bodies = []\n for match in _CLAUSE_RE.finditer(bare):\n keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n continue\n nxt = _CLAUSE_RE.search(bare, match.end())\n bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n\n if not bodies:\n return False\n\n for body in bodies:\n where = _WHERE_RE.search(body)\n pattern, predicate = (\n (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n )\n if not _body_is_scoped(pattern, predicate):\n return False\n return True\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n # Validate rel_type before interpolating into Cypher to prevent injection.\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n Every MATCH must scope itself via WHERE .session = $sess\n or a node pattern {session: $sess}.\"\"\"\n q = cypher.strip()\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n # Each MATCH must carry its own scope, in its own pattern or its own WHERE.\n if not _is_session_scoped(q):\n return (\n \"Every MATCH must scope itself to the current session, with either \"\n \"WHERE .session = $sess or {session: $sess} in its pattern, \"\n \"naming an alias that same MATCH binds. Independent patterns in one \"\n \"MATCH (comma-separated) are refused: write them as separate scoped \"\n \"MATCH clauses. A WHERE carrying the scope may not use OR or NOT; \"\n \"put {session: $sess} in the pattern instead and the rest of the \"\n \"WHERE is free.\"\n )\n # Enforce a result cap so agents cannot dump the entire graph.\n # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n # or append LIMIT 20 when no LIMIT clause is present.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n if extra_params:\n return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # Respect caller-provided non-terminal LIMIT clauses;\n # appending a second LIMIT would produce invalid Cypher.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n rows = client.cypher(q, params={\"sess\": SESSION})\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n # Every node on the path is checked, not just the endpoints. Nodes carry\n # their session from `save_fact`, so a path through a node belonging to\n # another session is refused rather than returned by way of its ends.\n rows = client.cypher(\n f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name, \"sess\": SESSION},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n params={\"sess\": SESSION},\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(f\"Session: {SESSION}\")\nprint(\"Tools:\", [t.name for t in tools])" }, { "cell_type": "markdown", "id": "guard-581f55ed", "metadata": {}, - "source": "### The guard, checked\n\n`query_facts` runs whatever Cypher the model writes, so the scope check is the\nonly thing keeping one session out of another's facts. The queries below are\nthe ones that fooled earlier versions of it, and each has to be refused now: a\npredicate placed in `RETURN` rather than `WHERE`, one hidden in a\nbacktick-quoted alias, one inside a string literal, one commented out in each\nof Cypher's two comment forms, one that ends its string early with an escaped\nquote, three where a single scoped pattern is used to vouch for an unscoped\none beside it, and three where the scope is written into the `WHERE` but then\ndisjoined or negated away so that it narrows nothing. Alongside them sit the\nqueries that must keep working, including a bracketed `OR` that leaves the\nscope intact. This runs on every execution, so a loosened rule fails here\nrather than in front of a user.\n" + "source": "### The guard, checked\n\n`query_facts` runs whatever Cypher the model writes, so the scope check is the\nonly thing keeping one session out of another's facts. The queries below are\nthe ones that fooled earlier versions of it, and each has to be refused now: a\npredicate placed in `RETURN` rather than `WHERE`, one hidden in a\nbacktick-quoted alias, one inside a string literal, one commented out in each\nof Cypher's two comment forms, one that ends its string early with an escaped\nquote, three where a single scoped pattern is used to vouch for an unscoped\none beside it, three where the scope is written into the `WHERE` but then\ndisjoined or negated away so that it narrows nothing, and two where it names\nan alias belonging to an earlier clause and so constrains nothing in the\n`MATCH` it sits on. Alongside them sit the queries that must keep working,\nincluding a bracketed `OR` that leaves the scope intact. This runs on every\nexecution, so a loosened rule fails here rather than in front of a user.\n" }, { "cell_type": "code", "id": "guard-6f7de8b1", "metadata": {}, - "source": "scoped = [\n \"MATCH (n) WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n \"MATCH (n {session: $sess}) RETURN n\",\n \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n # A comment must not swallow the predicate next to it.\n \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n # '//' inside a string opens no comment, and an escaped quote does not\n # end the string early.\n \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n # A bracketed OR is one term of the AND, so the scope still holds for\n # every row: refusing this would cost the agent a retry for nothing.\n \"MATCH (n) WHERE n.session = $sess AND (n.a OR n.b) RETURN n\",\n # OR and NOT are free once the scope is in the pattern, where no\n # predicate can undo it.\n \"MATCH (n {session: $sess}) WHERE NOT n.archived OR n.pinned RETURN n\",\n]\nunscoped = [\n \"MATCH (n) RETURN n\",\n \"MATCH (n) WHERE n.session = $other RETURN n\",\n \"MATCH (n {sessionish: $sess}) RETURN n\",\n \"RETURN $sess\",\n # The predicate is in RETURN, not in the WHERE it appears to qualify.\n \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n # Same clause boundary, reached through a map literal: RETURN is where\n # this {session: $sess} sits, so it names a value and filters nothing.\n \"MATCH (n) RETURN n, coalesce({session: $sess}, {}) AS marker\",\n # The whole predicate is an alias, so it is a name and not a filter.\n \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n # A string literal is data; it restricts nothing.\n \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n # The engine ignores both comment forms, so neither restricts anything.\n \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n # The escape keeps the literal open, so the text after it is still data.\n r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n # One scoped pattern does not vouch for the unscoped one beside it: each\n # of these returns every session's nodes through the unscoped alias.\n \"MATCH (n), (m {session: $sess}) RETURN n\",\n \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n # Present in the WHERE but not constraining it: the first is true for\n # every row, the second returns exactly the other sessions' rows, and\n # the third is (scope AND a) OR b, which b alone satisfies.\n \"MATCH (n) WHERE n.session = $sess OR true RETURN n\",\n \"MATCH (n) WHERE NOT n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess AND n.a OR n.b RETURN n\",\n]\n\nwrong = [q for q in scoped if not _is_session_scoped(q)]\nwrong += [q for q in unscoped if _is_session_scoped(q)]\nif wrong:\n raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\nprint(f\"guard agrees on all {len(scoped) + len(unscoped)} queries\")", + "source": "scoped = [\n \"MATCH (n) WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n \"MATCH (n {session: $sess}) RETURN n\",\n \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n # A comment must not swallow the predicate next to it.\n \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n # '//' inside a string opens no comment, and an escaped quote does not\n # end the string early.\n \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n # A bracketed OR is one term of the AND, so the scope still holds for\n # every row: refusing this would cost the agent a retry for nothing.\n \"MATCH (n) WHERE n.session = $sess AND (n.a OR n.b) RETURN n\",\n # OR and NOT are free once the scope is in the pattern, where no\n # predicate can undo it.\n \"MATCH (n {session: $sess}) WHERE NOT n.archived OR n.pinned RETURN n\",\n # Both aliases belong to this pattern, and both are scoped.\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess AND b.session = $sess RETURN a, b\",\n]\nunscoped = [\n \"MATCH (n) RETURN n\",\n \"MATCH (n) WHERE n.session = $other RETURN n\",\n \"MATCH (n {sessionish: $sess}) RETURN n\",\n \"RETURN $sess\",\n # The predicate is in RETURN, not in the WHERE it appears to qualify.\n \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n # Same clause boundary, reached through a map literal: RETURN is where\n # this {session: $sess} sits, so it names a value and filters nothing.\n \"MATCH (n) RETURN n, coalesce({session: $sess}, {}) AS marker\",\n # The whole predicate is an alias, so it is a name and not a filter.\n \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n # A string literal is data; it restricts nothing.\n \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n # The engine ignores both comment forms, so neither restricts anything.\n \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n # The escape keeps the literal open, so the text after it is still data.\n r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n # One scoped pattern does not vouch for the unscoped one beside it: each\n # of these returns every session's nodes through the unscoped alias.\n \"MATCH (n), (m {session: $sess}) RETURN n\",\n \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n # Present in the WHERE but not constraining it: the first is true for\n # every row, the second returns exactly the other sessions' rows, and\n # the third is (scope AND a) OR b, which b alone satisfies.\n \"MATCH (n) WHERE n.session = $sess OR true RETURN n\",\n \"MATCH (n) WHERE NOT n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess AND n.a OR n.b RETURN n\",\n # The equality names an alias from an earlier clause, so it re-states a\n # scope that already holds and leaves n free to match every session.\n \"MATCH (m {session: $sess}) MATCH (n) WHERE m.session = $sess RETURN n\",\n \"MATCH (m) WHERE m.session = $sess MATCH (n) WHERE m.session = $sess RETURN n\",\n]\n\nwrong = [q for q in scoped if not _is_session_scoped(q)]\nwrong += [q for q in unscoped if _is_session_scoped(q)]\nif wrong:\n raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\nprint(f\"guard agrees on all {len(scoped) + len(unscoped)} queries\")", "execution_count": null, "outputs": [] }, From c2025b9aef439e70f014502bab4d8bd627b9caa8 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:48:02 +0300 Subject: [PATCH 38/56] fix(demo): drop the import caches where the install happens The finder caches a directory listing taken before an install, so a package that has just appeared on disk stays invisible to the probe that follows. On a fresh environment the surface check therefore read the absence of a package that was already installed, and the cell went on to upgrade something it had just put there. Invalidating inside the installer covers every caller, including the first install, rather than only the upgrade path that had it. --- demo/notebooks/04_whats_new_in_0_5.ipynb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/demo/notebooks/04_whats_new_in_0_5.ipynb b/demo/notebooks/04_whats_new_in_0_5.ipynb index bba3e3a..90ce081 100644 --- a/demo/notebooks/04_whats_new_in_0_5.ipynb +++ b/demo/notebooks/04_whats_new_in_0_5.ipynb @@ -39,7 +39,7 @@ "execution_count": null, "metadata": {}, "outputs": [], - "source": "import importlib.util, inspect, os, shutil, subprocess, sys\n\n# (distribution on PyPI, module to import it by).\npkgs = [\n (\"coordinode\", \"coordinode\"),\n (\"nest_asyncio\", \"nest_asyncio\"),\n]\n\n# Install only what is missing. A checkout mounted into the image, or an\n# editable install, already provides these; pulling them from PyPI there\n# would shadow the very code the notebook is meant to exercise.\n#\n# find_spec raises rather than returning None when a dotted name's parent\n# package is absent, which is exactly the fresh environment this cell exists\n# for: unguarded, it would abort before installing anything.\ndef _missing(module: str) -> bool:\n try:\n return importlib.util.find_spec(module) is None\n except ModuleNotFoundError:\n return True\n\n\ndef _install(dists: list[str], upgrade: bool = False) -> None:\n \"\"\"Install into this interpreter with whatever installer it has.\n\n Colab ships pip. A uv-managed venv deliberately does not, and there\n `python -m pip` dies with \"No module named pip\" before the notebook\n reaches its first query, so fall back to uv targeting this same\n interpreter rather than uv's own default environment.\n \"\"\"\n flags = [\"-q\", \"-U\"] if upgrade else [\"-q\"]\n if not _missing(\"pip\"):\n cmd = [sys.executable, \"-m\", \"pip\", \"install\", *flags, *dists]\n elif shutil.which(\"uv\"):\n cmd = [\"uv\", \"pip\", \"install\", *flags, \"--python\", sys.executable, *dists]\n else:\n raise RuntimeError(\n f\"Neither pip nor uv is available to install: {', '.join(dists)}\"\n )\n subprocess.run(cmd, check=True, timeout=300)\n\n\ndef _has_0_5_surface() -> bool:\n \"\"\"Whether the installed `coordinode` has the API this notebook calls.\n\n Every cell below is about something 0.5 added, so \"the module imports\" is\n the wrong question: a 0.4 install answers it happily and then fails four\n cells later with an AttributeError about `create_nodes_batch`, which reads\n like a broken notebook rather than an old package. Two probes cover the\n whole set, since these all shipped together: the batch method, and the\n consistency arguments on `cypher`.\n\n Probing the surface rather than comparing `__version__` is deliberate. An\n editable install without hatch-vcs reports 0.0.0, so a version floor would\n reject exactly the checkout this notebook is meant to exercise.\n \"\"\"\n try:\n from coordinode import CoordinodeClient\n except ImportError:\n return False\n if not hasattr(CoordinodeClient, \"create_nodes_batch\"):\n return False\n params = inspect.signature(CoordinodeClient.cypher).parameters\n return {\"read_concern\", \"write_concern\", \"at_timestamp\"}.issubset(params)\n\n\nmissing = [dist for dist, mod in pkgs if _missing(mod)]\nif missing:\n _install(missing)\n\nif not _has_0_5_surface():\n print(\"Installed `coordinode` predates 0.5, upgrading it.\")\n _install([\"coordinode\"], upgrade=True)\n # The old module object stays in sys.modules and would keep answering\n # imports for the rest of the session, so drop it and re-probe.\n for name in [m for m in sys.modules if m == \"coordinode\" or m.startswith(\"coordinode.\")]:\n del sys.modules[name]\n importlib.invalidate_caches()\n if not _has_0_5_surface():\n raise RuntimeError(\n \"`coordinode` still lacks the 0.5 client surface after upgrading. \"\n \"If this environment mounts a checkout or uses an editable install, \"\n \"that source is older than 0.5: update it, or install the released \"\n \"package instead.\"\n )\n\nimport nest_asyncio\n\nnest_asyncio.apply()\n\nprint(\"Ready\")\n", + "source": "import importlib.util, inspect, os, shutil, subprocess, sys\n\n# (distribution on PyPI, module to import it by).\npkgs = [\n (\"coordinode\", \"coordinode\"),\n (\"nest_asyncio\", \"nest_asyncio\"),\n]\n\n# Install only what is missing. A checkout mounted into the image, or an\n# editable install, already provides these; pulling them from PyPI there\n# would shadow the very code the notebook is meant to exercise.\n#\n# find_spec raises rather than returning None when a dotted name's parent\n# package is absent, which is exactly the fresh environment this cell exists\n# for: unguarded, it would abort before installing anything.\ndef _missing(module: str) -> bool:\n try:\n return importlib.util.find_spec(module) is None\n except ModuleNotFoundError:\n return True\n\n\ndef _install(dists: list[str], upgrade: bool = False) -> None:\n \"\"\"Install into this interpreter with whatever installer it has.\n\n Colab ships pip. A uv-managed venv deliberately does not, and there\n `python -m pip` dies with \"No module named pip\" before the notebook\n reaches its first query, so fall back to uv targeting this same\n interpreter rather than uv's own default environment.\n\n The finder caches a directory listing taken before the install, so a\n package that has just appeared on disk is invisible until the caches are\n dropped. Doing it here means every caller sees what it installed.\n \"\"\"\n flags = [\"-q\", \"-U\"] if upgrade else [\"-q\"]\n if not _missing(\"pip\"):\n cmd = [sys.executable, \"-m\", \"pip\", \"install\", *flags, *dists]\n elif shutil.which(\"uv\"):\n cmd = [\"uv\", \"pip\", \"install\", *flags, \"--python\", sys.executable, *dists]\n else:\n raise RuntimeError(\n f\"Neither pip nor uv is available to install: {', '.join(dists)}\"\n )\n subprocess.run(cmd, check=True, timeout=300)\n importlib.invalidate_caches()\n\n\ndef _has_0_5_surface() -> bool:\n \"\"\"Whether the installed `coordinode` has the API this notebook calls.\n\n Every cell below is about something 0.5 added, so \"the module imports\" is\n the wrong question: a 0.4 install answers it happily and then fails four\n cells later with an AttributeError about `create_nodes_batch`, which reads\n like a broken notebook rather than an old package. Two probes cover the\n whole set, since these all shipped together: the batch method, and the\n consistency arguments on `cypher`.\n\n Probing the surface rather than comparing `__version__` is deliberate. An\n editable install without hatch-vcs reports 0.0.0, so a version floor would\n reject exactly the checkout this notebook is meant to exercise.\n \"\"\"\n try:\n from coordinode import CoordinodeClient\n except ImportError:\n return False\n if not hasattr(CoordinodeClient, \"create_nodes_batch\"):\n return False\n params = inspect.signature(CoordinodeClient.cypher).parameters\n return {\"read_concern\", \"write_concern\", \"at_timestamp\"}.issubset(params)\n\n\nmissing = [dist for dist, mod in pkgs if _missing(mod)]\nif missing:\n _install(missing)\n\nif not _has_0_5_surface():\n print(\"Installed `coordinode` predates 0.5, upgrading it.\")\n _install([\"coordinode\"], upgrade=True)\n # The old module object stays in sys.modules and would keep answering\n # imports for the rest of the session, so drop it and re-probe.\n for name in [m for m in sys.modules if m == \"coordinode\" or m.startswith(\"coordinode.\")]:\n del sys.modules[name]\n if not _has_0_5_surface():\n raise RuntimeError(\n \"`coordinode` still lacks the 0.5 client surface after upgrading. \"\n \"If this environment mounts a checkout or uses an editable install, \"\n \"that source is older than 0.5: update it, or install the released \"\n \"package instead.\"\n )\n\nimport nest_asyncio\n\nnest_asyncio.apply()\n\nprint(\"Ready\")\n", "id": "cell-02-54b3dc" }, { From a8fa5b30433e1a9204d8b0b63b34efce879db44b Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:48:16 +0300 Subject: [PATCH 39/56] fix(embedded): keep a path a path on re-encode A path came back as a plain dict, and the encoder cannot tell that from a map holding the same keys, so reading a path and writing it straight back stored the property as a map. The same trap the multi-vector tag closed earlier, one type over. Paths now carry a dict subclass, recognised ahead of the generic mapping branch on the way in, on both the gRPC client and the embedded bridge. It reads, indexes and compares exactly like the dict it replaces, so nothing downstream changes; an ordinary dict with those keys still stores as a map, which the tests pin from both directions. Regression coverage in both places: the proto conversion round trip, and a read-modify-write against the real embedded engine. --- coordinode-embedded/src/lib.rs | 72 +++++++++++++++++++++++++++++- coordinode/coordinode/_types.py | 45 +++++++++++++++++-- tests/unit/test_embedded_values.py | 32 ++++++++++++- tests/unit/test_types.py | 27 +++++++++++ 4 files changed, 169 insertions(+), 7 deletions(-) diff --git a/coordinode-embedded/src/lib.rs b/coordinode-embedded/src/lib.rs index 70272dc..35f17d2 100644 --- a/coordinode-embedded/src/lib.rs +++ b/coordinode-embedded/src/lib.rs @@ -17,7 +17,7 @@ mod hnsw; use std::collections::HashMap; use std::sync::Mutex; -use coordinode_core::graph::types::{GeoValue, Value}; +use coordinode_core::graph::types::{GeoValue, PathRel, PathValue, Value}; use coordinode_embed::{Database, DatabaseError}; use pyo3::exceptions::{PyRuntimeError, PyValueError}; use pyo3::prelude::*; @@ -39,6 +39,17 @@ fn multi_vector_type(py: Python<'_>) -> Option> { .ok() } +/// The `Path` tag from the `coordinode` package, when it is installed. +/// +/// A dict subclass, for the same reason and with the same fallback as +/// [`multi_vector_type`]: without the tag a path read back is an ordinary +/// mapping, and writing it out again would store a map. +fn path_type(py: Python<'_>) -> Option> { + py.import("coordinode._types") + .and_then(|m| m.getattr("Path")) + .ok() +} + fn value_to_py(py: Python<'_>, v: Value) -> PyResult { match v { Value::Null => Ok(py.None()), @@ -121,7 +132,10 @@ fn value_to_py(py: Python<'_>, v: Value) -> PyResult { rels.append(r)?; } d.set_item("rels", rels)?; - Ok(d.into_any().unbind()) + match path_type(py) { + Some(cls) => Ok(cls.call1((d,))?.unbind()), + None => Ok(d.into_any().unbind()), + } } } } @@ -174,6 +188,52 @@ fn msgpack_to_py(py: Python<'_>, v: MsgpackValue) -> PyResult { // ── PyObject → Value conversion (for params) ───────────────────────────────── +/// Rebuild a [`PathValue`] from the mapping `value_to_py` produces for one. +/// +/// The keys mirror that shape exactly: `nodes` is the id sequence and `rels` +/// the hops, each carrying its type and its endpoints. A missing or misshapen +/// field is reported rather than skipped: the value is on its way into a +/// property, and a silently truncated path stores as a valid path. +fn py_dict_to_path(d: &Bound<'_, PyDict>) -> PyResult { + let bad = |what: &str| PyValueError::new_err(format!("Path {what}")); + let nodes: Vec = d + .get_item("nodes")? + .ok_or_else(|| bad("is missing 'nodes'"))? + .extract() + .map_err(|_| bad("'nodes' must be a list of node ids"))?; + + let rels_obj = d + .get_item("rels")? + .ok_or_else(|| bad("is missing 'rels'"))?; + let rels_list = rels_obj + .downcast::() + .map_err(|_| bad("'rels' must be a list"))?; + let mut rels = Vec::with_capacity(rels_list.len()); + for item in rels_list.iter() { + let hop = item + .downcast::() + .map_err(|_| bad("hops must be dicts"))?; + let field = |key: &str| { + hop.get_item(key) + .ok() + .flatten() + .ok_or_else(|| bad(&format!("hop is missing '{key}'"))) + }; + rels.push(PathRel { + edge_type: field("type")? + .extract() + .map_err(|_| bad("hop 'type' must be a string"))?, + source: field("source")? + .extract() + .map_err(|_| bad("hop 'source' must be a node id"))?, + target: field("target")? + .extract() + .map_err(|_| bad("hop 'target' must be a node id"))?, + }); + } + Ok(PathValue { nodes, rels }) +} + fn py_to_value(obj: &Bound<'_, PyAny>) -> PyResult { if obj.is_none() { return Ok(Value::Null); @@ -211,6 +271,14 @@ fn py_to_value(obj: &Bound<'_, PyAny>) -> PyResult { return Ok(Value::Array(items?)); } if let Ok(d) = obj.downcast::() { + // A tagged path before the generic dict branch, for the same reason as + // the multi-vector above: it IS a dict, so the map branch would take it + // and rewrite the property as a map. + if let Some(cls) = path_type(obj.py()) { + if obj.is_instance(&cls).unwrap_or(false) { + return Ok(Value::Path(py_dict_to_path(d)?)); + } + } let mut map = std::collections::BTreeMap::new(); for (k, v) in d.iter() { let key = k diff --git a/coordinode/coordinode/_types.py b/coordinode/coordinode/_types.py index 16cbb65..506e993 100644 --- a/coordinode/coordinode/_types.py +++ b/coordinode/coordinode/_types.py @@ -25,6 +25,19 @@ class MultiVector(list): __slots__ = () +class Path(dict): + """A graph path: the node ids it runs through, and the hops between them. + + A plain ``dict`` with ``nodes`` and ``rels`` keys, so it reads, indexes and + compares exactly like the mapping it looks like. As with + :class:`MultiVector`, the type exists only to carry the distinction back to + the wire: a value that arrived as a path re-encodes as one, while an + ordinary dict that happens to hold those keys stays a map. + """ + + __slots__ = () + + def to_property_value(py_val: PyValue) -> Any: """Convert a Python value to a proto PropertyValue.""" from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] @@ -67,6 +80,30 @@ def to_property_value(py_val: PyValue) -> Any: else: pl = PropertyList(values=[to_property_value(v) for v in py_val]) pv.list_value.CopyFrom(pl) + elif isinstance(py_val, Path): + # Before the dict branch below, which would otherwise take it: Path is + # a dict, and encoding it as a map changes the property's wire type on + # a read-modify-write. + from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] + Path as PathProto, + ) + from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] + PathRel as PathRelProto, + ) + + pv.path_value.CopyFrom( + PathProto( + nodes=[int(n) for n in py_val.get("nodes", [])], + rels=[ + PathRelProto( + edge_type=str(rel["type"]), + source=int(rel["source"]), + target=int(rel["target"]), + ) + for rel in py_val.get("rels", []) + ], + ) + ) elif isinstance(py_val, dict): pm = PropertyMap(entries={k: to_property_value(v) for k, v in py_val.items()}) pv.map_value.CopyFrom(pm) @@ -109,10 +146,10 @@ def from_property_value(pv: Any) -> PyValue: # Relationship properties are not carried in the path model, so a hop # is its type and its endpoints. path = pv.path_value - return { - "nodes": list(path.nodes), - "rels": [{"type": r.edge_type, "source": r.source, "target": r.target} for r in path.rels], - } + return Path( + nodes=list(path.nodes), + rels=[{"type": r.edge_type, "source": r.source, "target": r.target} for r in path.rels], + ) else: return None diff --git a/tests/unit/test_embedded_values.py b/tests/unit/test_embedded_values.py index a681c30..f1af2a4 100644 --- a/tests/unit/test_embedded_values.py +++ b/tests/unit/test_embedded_values.py @@ -10,7 +10,7 @@ ce = pytest.importorskip("coordinode_embedded") -from coordinode._types import MultiVector # noqa: E402 (after the skip guard) +from coordinode._types import MultiVector, Path # noqa: E402 (after the skip guard) @pytest.fixture @@ -51,3 +51,33 @@ def test_a_plain_nested_list_is_not_promoted(self, db) -> None: assert not isinstance(rows[0]["rows"], MultiVector) assert rows[0]["rows"] == [[1.0, 2.0], [3.0, 4.0]] + + +class TestPathRoundTrip: + """A path read back and written straight out keeps its type. + + The same trap as the multi-vector above, one type over: the converter + handed back a plain dict, and the input path cannot tell that from a map + with the same keys, so a read-modify-write turned the property into a map. + """ + + def test_survives_a_read_modify_write(self, db) -> None: + db.cypher("CREATE (a:Stop {tag: 'p', name: 'a'})-[:HOP]->(b:Stop {tag: 'p', name: 'b'})") + + first = db.cypher("MATCH p = (:Stop {tag: 'p', name: 'a'})-[:HOP]->(:Stop) RETURN p AS p")[0]["p"] + assert isinstance(first, Path), f"a path came back as {type(first).__name__}" + assert len(first["nodes"]) == 2 + assert [hop["type"] for hop in first["rels"]] == ["HOP"] + + db.cypher("MATCH (n:Stop {tag: 'p', name: 'a'}) SET n.route = $p", params={"p": first}) + + second = db.cypher("MATCH (n:Stop {tag: 'p', name: 'a'}) RETURN n.route AS route")[0]["route"] + assert isinstance(second, Path), "the rewrite must not change the type" + assert second == first + + def test_a_plain_dict_is_not_promoted(self, db) -> None: + """Only the tag makes a path; a map with those keys stays a map.""" + rows = db.cypher("RETURN $m AS m", params={"m": {"nodes": [1, 2], "rels": []}}) + + assert not isinstance(rows[0]["m"], Path) + assert rows[0]["m"] == {"nodes": [1, 2], "rels": []} diff --git a/tests/unit/test_types.py b/tests/unit/test_types.py index 677df9b..5c2ebf3 100644 --- a/tests/unit/test_types.py +++ b/tests/unit/test_types.py @@ -157,3 +157,30 @@ def test_a_plain_nested_list_is_not_a_multi_vector(self): """Only a value that came back as one re-encodes as one.""" pv = to_property_value([[0.5, 1.5], [2.5, 3.5]]) assert pv.WhichOneof("value") == "list_value" + + def test_path_survives_a_round_trip(self): + """Reading a path and writing it back keeps its wire type. + + The same trap as the multi-vector above, one type over: a path decoded + to a plain dict is indistinguishable from a map with those keys, so a + read-modify-write stored the property as a map. + """ + original = PropertyValue( + path_value=Path( + nodes=[7, 8], + rels=[PathRel(edge_type="LINK", source=7, target=8)], + ) + ) + decoded = from_property_value(original) + # Still an ordinary mapping to anyone reading it. + assert decoded == {"nodes": [7, 8], "rels": [{"type": "LINK", "source": 7, "target": 8}]} + + re_encoded = to_property_value(decoded) + assert re_encoded.WhichOneof("value") == "path_value", f"re-encoded as {re_encoded.WhichOneof('value')}" + assert list(re_encoded.path_value.nodes) == [7, 8] + assert re_encoded.path_value.rels[0].edge_type == "LINK" + + def test_a_plain_dict_is_not_a_path(self): + """Only a value that came back as one re-encodes as one.""" + pv = to_property_value({"nodes": [1, 2], "rels": []}) + assert pv.WhichOneof("value") == "map_value" From 5ec339025128d351624f556b9fccb381d7ad6fc4 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:53:16 +0300 Subject: [PATCH 40/56] build: point the quick-start stack at the tested server The root stack still launched 0.5.3 while the demo stack and the integration job moved to 0.5.5, so the compose file the README sends a newcomer to gave them an older server than anything here is tested against, including the relationship-property fix these packages rely on. Same digest as the other two, pinned rather than tagged because a tag can be re-pushed. --- docker-compose.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/docker-compose.yml b/docker-compose.yml index 26faebc..cdc38d9 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -7,7 +7,10 @@ version: "3.9" services: coordinode: - image: ghcr.io/structured-world/coordinode:0.5.3 + # The same 0.5.5 digest the demo stack and the integration job run, so the + # quick start does not hand a newcomer an older server than everything else + # here is tested against. Pinned by digest because a tag can be re-pushed. + image: ghcr.io/structured-world/coordinode@sha256:8d3554be7680aa2cea7b6e773037aee97513865f4698b6df0ffc2daf845c42b8 # Named for this repository rather than plain `coordinode`: the server # repository runs its own compose stack that claims that name, and a bare # name is global to the daemon. From 29a07bf1fd63214f1508877a6810af391fb3b478 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:53:32 +0300 Subject: [PATCH 41/56] fix(embedded): keep the value tags in a standalone install The tags came from `coordinode`, which the embedded engine deliberately does not depend on, so installing it alone left the lookup returning None and both new types degrading to the plain container they were tagged to be told apart from. The fallback was silent: a multi-vector read back re-encoded as an array and a path as a map, exactly what the tags exist to prevent. They now live in `coordinode_embedded._types`, which re-exports `coordinode`'s definitions when that package is present and defines equivalents when it is not. With both installed the two names are the same class object, so a value tagged through either is recognised by the other. Both are exported from their packages as well. Only an instance activates the multi-vector and path wire types, so without a public constructor there was no supported way to send one. Verified in a venv holding the wheel alone, where `coordinode._types` is not importable: the round-trip tests pass there rather than falling back. --- .../python/coordinode_embedded/__init__.py | 3 +- .../python/coordinode_embedded/_types.py | 33 +++++++++++++++++++ coordinode-embedded/src/lib.rs | 23 ++++++------- coordinode/coordinode/__init__.py | 6 ++++ tests/unit/test_embedded_values.py | 5 ++- 5 files changed, 57 insertions(+), 13 deletions(-) create mode 100644 coordinode-embedded/python/coordinode_embedded/_types.py diff --git a/coordinode-embedded/python/coordinode_embedded/__init__.py b/coordinode-embedded/python/coordinode_embedded/__init__.py index 381541f..52de969 100644 --- a/coordinode-embedded/python/coordinode_embedded/__init__.py +++ b/coordinode-embedded/python/coordinode_embedded/__init__.py @@ -22,5 +22,6 @@ """ from ._coordinode_embedded import Hnsw, LocalClient +from ._types import MultiVector, Path -__all__ = ["Hnsw", "LocalClient"] +__all__ = ["Hnsw", "LocalClient", "MultiVector", "Path"] diff --git a/coordinode-embedded/python/coordinode_embedded/_types.py b/coordinode-embedded/python/coordinode_embedded/_types.py new file mode 100644 index 0000000..a6cc614 --- /dev/null +++ b/coordinode-embedded/python/coordinode_embedded/_types.py @@ -0,0 +1,33 @@ +"""Value types whose wire form a plain Python container cannot express. + +A multi-vector is a list of lists and a path is a mapping, so neither can be +told apart from the ordinary container it looks like once it has been handed +to Python. These tags carry the distinction, and the conversion layer checks +for them ahead of the generic list and dict branches: without one, reading a +value and writing it straight back stores it as something else. + +`coordinode` owns the canonical definitions, and this package deliberately +does not depend on it: the embedded engine is usable on its own. So when that +package is present its classes are re-used here, and a value tagged through +one is recognised by the other; a standalone install falls back to the +equivalents below. +""" + +from __future__ import annotations + +try: # pragma: no cover - exercised by whichever install shape is in use + from coordinode._types import MultiVector, Path +except ImportError: + + class MultiVector(list): # type: ignore[no-redef] + """Several equal-width vectors describing one item.""" + + __slots__ = () + + class Path(dict): # type: ignore[no-redef] + """A graph path: the node ids it runs through, and the hops between.""" + + __slots__ = () + + +__all__ = ["MultiVector", "Path"] diff --git a/coordinode-embedded/src/lib.rs b/coordinode-embedded/src/lib.rs index 35f17d2..179b215 100644 --- a/coordinode-embedded/src/lib.rs +++ b/coordinode-embedded/src/lib.rs @@ -26,26 +26,27 @@ use rmpv::Value as MsgpackValue; // ── Value → PyObject conversion ────────────────────────────────────────────── -/// The `MultiVector` tag from the `coordinode` package, when it is installed. +/// The `MultiVector` tag, from this package's own `_types` module. /// /// A list subclass, so a tagged value reads and compares exactly like the -/// nested list it replaces; the type exists only to survive a round trip. This -/// package does not depend on `coordinode` (the embedded engine is usable on -/// its own), so a missing import is an ordinary outcome and the caller falls -/// back to a plain list, which is what this returned before the tag existed. +/// nested list it replaces; the type exists only to survive a round trip, +/// since an untagged nested list re-encodes as an array and changes the +/// property's type. That module re-exports `coordinode`'s definition when that +/// package is installed and defines an equivalent when it is not, so the tag +/// holds for a standalone install of the embedded engine too. fn multi_vector_type(py: Python<'_>) -> Option> { - py.import("coordinode._types") + py.import("coordinode_embedded._types") .and_then(|m| m.getattr("MultiVector")) .ok() } -/// The `Path` tag from the `coordinode` package, when it is installed. +/// The `Path` tag, from this package's own `_types` module. /// -/// A dict subclass, for the same reason and with the same fallback as -/// [`multi_vector_type`]: without the tag a path read back is an ordinary -/// mapping, and writing it out again would store a map. +/// A dict subclass, for the same reason as [`multi_vector_type`]: without the +/// tag a path read back is an ordinary mapping, and writing it out again would +/// store a map. fn path_type(py: Python<'_>) -> Option> { - py.import("coordinode._types") + py.import("coordinode_embedded._types") .and_then(|m| m.getattr("Path")) .ok() } diff --git a/coordinode/coordinode/__init__.py b/coordinode/coordinode/__init__.py index c728f12..7c64c2c 100644 --- a/coordinode/coordinode/__init__.py +++ b/coordinode/coordinode/__init__.py @@ -18,6 +18,7 @@ result = await db.cypher("MATCH (n) RETURN count(n) AS total") """ +from coordinode._types import MultiVector, Path from coordinode.client import ( AsyncCoordinodeClient, CoordinodeClient, @@ -39,6 +40,11 @@ __all__ = [ "CoordinodeClient", "AsyncCoordinodeClient", + # Values whose wire type only a tag can carry: a plain nested list encodes + # as a list and a plain dict as a map, so sending either of these types + # requires the constructor, not just the shape. + "MultiVector", + "Path", "NodeResult", "EdgeResult", "VectorResult", diff --git a/tests/unit/test_embedded_values.py b/tests/unit/test_embedded_values.py index f1af2a4..8e0d08f 100644 --- a/tests/unit/test_embedded_values.py +++ b/tests/unit/test_embedded_values.py @@ -10,7 +10,10 @@ ce = pytest.importorskip("coordinode_embedded") -from coordinode._types import MultiVector, Path # noqa: E402 (after the skip guard) +# From the embedded package rather than `coordinode`, so this file runs where +# only the wheel is installed. It re-exports `coordinode`'s definitions when +# that package is present, so this is the same class either way. +from coordinode_embedded import MultiVector, Path # noqa: E402 (after the skip guard) @pytest.fixture From d7782b27b5ebd31b8b16c143d0d0b15a57defdce Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 13:53:43 +0300 Subject: [PATCH 42/56] ci: run every extension-backed test in the wheel job The wheel job invoked one test file by name, so the value round-trip tests ran in no job at all: the main test job skips them for want of a built extension, and this one never asked for them. A regression in the conversion layer could merge with the coverage nominally in place. Both files are named now, and the job's existing no-skips assertion keeps them honest. --- .github/workflows/ci.yml | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 3c117e9..4b7c34f 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -93,7 +93,12 @@ jobs: # jobs instead of whatever is newest on PyPI that morning. uv pip install --python /tmp/test-venv/bin/python "$WHL" \ numpy==2.4.6 pytest==9.1.1 pytest-timeout==2.4.0 - OUTPUT=$(/tmp/test-venv/bin/python -m pytest tests/unit/test_hnsw.py -v --strict-markers -ra 2>&1) + # Every test file that needs the extension belongs here: the main + # `test` job skips them all for want of a wheel, so a file left out + # of this list runs in no job at all. + OUTPUT=$(/tmp/test-venv/bin/python -m pytest \ + tests/unit/test_hnsw.py tests/unit/test_embedded_values.py \ + -v --strict-markers -ra 2>&1) echo "$OUTPUT" # `-ra` prints a "SKIPPED [N]" short summary header when anything was # skipped; importorskip-based skip also surfaces this way. Use the From 04dfe200a60cdc743076e4a069651a0a7e1a8584 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 15:55:53 +0300 Subject: [PATCH 43/56] fix(demo): scope every node a MATCH names, not just one of them A hop with one scoped end passed the guard, so both of these returned an unfiltered node: MATCH (a {session: $sess})-[r]->(b) RETURN b MATCH (a)-[r]->(b) WHERE a.session = $sess RETURN b Nothing in the shared graph stops an edge from pointing at another session's node, so the far end of such a hop is exactly the data the guard exists to withhold. Checking that some alias in the pattern is scoped was never the right question. Each node pattern is now read on its own: it is scoped when its own map carries {session: $sess}, or when the WHERE names that alias under the existing OR and NOT rules. Every named node must clear that bar. Relationship aliases are exempt, since an edge alias returns no node, and so are anonymous nodes, which bind no name for a RETURN to reach. A path variable could still expose one through nodes(p), which is why find_related keeps its own explicit ALL(...) over the path. Both leaks join the checked list, which now stands at 35 queries and runs on every execution. --- demo/notebooks/03_langgraph_agent.ipynb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 7dddb8f..bd25010 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -160,19 +160,19 @@ "id": "6", "metadata": {}, "outputs": [], - "source": "import os, re, uuid\nfrom langchain_core.tools import tool\n\nSESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n# Regex guards for query_facts (demo safety guard).\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n# thing keeping one session out of another's facts, so it is built to refuse\n# rather than to approve. Every way a query slipped past an earlier version:\n#\n# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n# WHERE true /* n.session = $sess */ commented out, so ignored\n# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n# WHERE n.session = $sess OR true disjoined away\n# WHERE NOT n.session = $sess inverted into its opposite\n# MATCH (m {session: $sess}) MATCH (n)\n# WHERE m.session = $sess an alias from another clause\n#\n# So: quoted spans and comments are blanked in one left-to-right pass, with\n# backslash escapes honoured, then EVERY MATCH has to carry its own scope, on\n# an alias of its own pattern, in a form no predicate can undo.\n#\n# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n# node, because proving that needs the AST. A guard that refuses a valid\n# query costs the agent one retry; one that admits an invalid query leaks.\n_MASKED_RE = re.compile(\n r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n re.DOTALL,\n)\n_CLAUSE_RE = re.compile(\n r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n re.IGNORECASE,\n)\n_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n# The alias is captured, so the scope can be tied to the pattern it qualifies.\n_SESSION_EQ_RE = re.compile(r\"\\b([A-Za-z_]\\w*)\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE)\n_SESSION_NODE_SCOPE_RE = re.compile(\n r\"\\([^()]*\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Whatever a node or relationship pattern binds: `(n:Entity {...})`, `[r:REL]`.\n# An anonymous `()` or `[*1..3]` binds nothing and yields no alias.\n_PATTERN_ALIAS_RE = re.compile(r\"[(\\[]\\s*([A-Za-z_]\\w*)\")\n_NOT_RE = re.compile(r\"\\bNOT\\b\", re.IGNORECASE)\n# Brackets and the OR keyword, so a predicate can be walked with a depth count.\n_OR_SCAN_RE = re.compile(r\"[([{]|[)\\]}]|\\bOR\\b\", re.IGNORECASE)\n\n\ndef _blank(match: re.Match) -> str:\n \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n text = match.group(0)\n return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n\n\ndef _has_top_level_comma(pattern: str) -> bool:\n \"\"\"Whether the pattern holds a comma outside any bracket.\n\n That comma separates two independent patterns, and only one of them may\n be scoped. Quoted spans are already blanked, so no comma here is data.\n \"\"\"\n depth = 0\n for char in pattern:\n if char in \"([{\":\n depth += 1\n elif char in \")]}\":\n depth -= 1\n elif char == \",\" and depth == 0:\n return True\n return False\n\n\ndef _top_level_or_parts(predicate: str) -> list[str]:\n \"\"\"Split a predicate on the OR keywords that sit outside every bracket.\n\n AND binds tighter than OR, so the predicate holds whenever any one of\n these parts holds. A part without the session equality therefore admits\n rows on its own, whatever the parts beside it say: `n.session = $sess OR\n true` filters nothing at all. Each part has to carry the scope itself.\n \"\"\"\n parts, depth, start = [], 0, 0\n for match in _OR_SCAN_RE.finditer(predicate):\n token = match.group(0)\n if token in \"([{\":\n depth += 1\n elif token in \")]}\":\n depth -= 1\n elif depth == 0: # an OR joining two top-level parts\n parts.append(predicate[start : match.start()])\n start = match.end()\n parts.append(predicate[start:])\n return parts\n\n\ndef _body_is_scoped(pattern: str, predicate: str) -> bool:\n \"\"\"Whether one MATCH restricts the rows it produces to this session.\"\"\"\n # Two independent patterns, of which only one need be scoped.\n if _has_top_level_comma(pattern):\n return False\n # Scope written into the pattern is structural: no predicate can undo it,\n # so OR and NOT are free from here on.\n if _SESSION_NODE_SCOPE_RE.search(pattern):\n return True\n # Scope in the WHERE instead. Being present is not enough there: NOT turns\n # the equality into its opposite, and an OR branch without it returns rows\n # regardless of it. Both are refused rather than read, which needs an AST.\n if _NOT_RE.search(predicate):\n return False\n # The equality also has to constrain THIS pattern. `MATCH (m {session:\n # $sess}) MATCH (n) WHERE m.session = $sess` re-states a scope that already\n # holds and says nothing about n, so every session's nodes come back\n # through n. Only an alias this pattern binds counts.\n aliases = {match.group(1) for match in _PATTERN_ALIAS_RE.finditer(pattern)}\n return all(\n any(match.group(1) in aliases for match in _SESSION_EQ_RE.finditer(part))\n for part in _top_level_or_parts(predicate)\n )\n\n\ndef _is_session_scoped(query: str) -> bool:\n \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n bare = _MASKED_RE.sub(_blank, query)\n\n # A clause runs to whichever clause opens next. WHERE is not in that list,\n # so a MATCH clause carries its own WHERE and nothing else: a predicate\n # sitting in RETURN falls outside the MATCH it appears to qualify.\n bodies = []\n for match in _CLAUSE_RE.finditer(bare):\n keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n continue\n nxt = _CLAUSE_RE.search(bare, match.end())\n bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n\n if not bodies:\n return False\n\n for body in bodies:\n where = _WHERE_RE.search(body)\n pattern, predicate = (\n (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n )\n if not _body_is_scoped(pattern, predicate):\n return False\n return True\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n # Validate rel_type before interpolating into Cypher to prevent injection.\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n Every MATCH must scope itself via WHERE .session = $sess\n or a node pattern {session: $sess}.\"\"\"\n q = cypher.strip()\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n # Each MATCH must carry its own scope, in its own pattern or its own WHERE.\n if not _is_session_scoped(q):\n return (\n \"Every MATCH must scope itself to the current session, with either \"\n \"WHERE .session = $sess or {session: $sess} in its pattern, \"\n \"naming an alias that same MATCH binds. Independent patterns in one \"\n \"MATCH (comma-separated) are refused: write them as separate scoped \"\n \"MATCH clauses. A WHERE carrying the scope may not use OR or NOT; \"\n \"put {session: $sess} in the pattern instead and the rest of the \"\n \"WHERE is free.\"\n )\n # Enforce a result cap so agents cannot dump the entire graph.\n # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n # or append LIMIT 20 when no LIMIT clause is present.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n if extra_params:\n return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # Respect caller-provided non-terminal LIMIT clauses;\n # appending a second LIMIT would produce invalid Cypher.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n rows = client.cypher(q, params={\"sess\": SESSION})\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n # Every node on the path is checked, not just the endpoints. Nodes carry\n # their session from `save_fact`, so a path through a node belonging to\n # another session is refused rather than returned by way of its ends.\n rows = client.cypher(\n f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name, \"sess\": SESSION},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n params={\"sess\": SESSION},\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(f\"Session: {SESSION}\")\nprint(\"Tools:\", [t.name for t in tools])" + "source": "import os, re, uuid\nfrom langchain_core.tools import tool\n\nSESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n# Regex guards for query_facts (demo safety guard).\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n# thing keeping one session out of another's facts, so it is built to refuse\n# rather than to approve. Every way a query slipped past an earlier version:\n#\n# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n# WHERE true /* n.session = $sess */ commented out, so ignored\n# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n# WHERE n.session = $sess OR true disjoined away\n# WHERE NOT n.session = $sess inverted into its opposite\n# MATCH (m {session: $sess}) MATCH (n)\n# WHERE m.session = $sess an alias from another clause\n# MATCH (a {session: $sess})-[r]->(b) RETURN b only one end of the hop\n#\n# So: quoted spans and comments are blanked in one left-to-right pass, with\n# backslash escapes honoured, then EVERY node a MATCH names carries the scope\n# itself, in its own pattern or through a WHERE that no OR or NOT can undo.\n#\n# The last line is why per-node rather than per-clause. Nothing stops an edge\n# from pointing at a node of another session, so a hop with one scoped end\n# returns the other end unfiltered. Requiring only \"some alias here is scoped\"\n# hands that data straight back.\n#\n# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n# node, because proving that needs the AST. A guard that refuses a valid\n# query costs the agent one retry; one that admits an invalid query leaks.\n#\n# Known limit: an anonymous node binds no name, so nothing can return it and\n# it is not required to carry the scope. A path variable could still expose\n# one through `nodes(p)`, which is why `find_related` builds its own query\n# with an explicit ALL(...) over the path instead of coming through here.\n_MASKED_RE = re.compile(\n r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n re.DOTALL,\n)\n_CLAUSE_RE = re.compile(\n r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n re.IGNORECASE,\n)\n_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n# `{... session: $sess ...}` inside one node pattern. Scope written there is\n# structural: it binds that node, and no predicate can undo it.\n_SESSION_INLINE_RE = re.compile(r\"\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\", re.IGNORECASE)\n# The name a node pattern binds, when it binds one: `(n:Entity {...})` gives\n# `n`, while `(:Entity)` and `()` give nothing.\n_NODE_ALIAS_RE = re.compile(r\"\\s*([A-Za-z_]\\w*)\")\n_NOT_RE = re.compile(r\"\\bNOT\\b\", re.IGNORECASE)\n# Brackets and the OR keyword, so a predicate can be walked with a depth count.\n_OR_SCAN_RE = re.compile(r\"[([{]|[)\\]}]|\\bOR\\b\", re.IGNORECASE)\n\n\ndef _blank(match: re.Match) -> str:\n \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n text = match.group(0)\n return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n\n\ndef _has_top_level_comma(pattern: str) -> bool:\n \"\"\"Whether the pattern holds a comma outside any bracket.\n\n That comma separates two independent patterns, and only one of them may\n be scoped. Quoted spans are already blanked, so no comma here is data.\n \"\"\"\n depth = 0\n for char in pattern:\n if char in \"([{\":\n depth += 1\n elif char in \")]}\":\n depth -= 1\n elif char == \",\" and depth == 0:\n return True\n return False\n\n\ndef _top_level_or_parts(predicate: str) -> list[str]:\n \"\"\"Split a predicate on the OR keywords that sit outside every bracket.\n\n AND binds tighter than OR, so the predicate holds whenever any one of\n these parts holds. A part without the session equality therefore admits\n rows on its own, whatever the parts beside it say: `n.session = $sess OR\n true` filters nothing at all. Each part has to carry the scope itself.\n \"\"\"\n parts, depth, start = [], 0, 0\n for match in _OR_SCAN_RE.finditer(predicate):\n token = match.group(0)\n if token in \"([{\":\n depth += 1\n elif token in \")]}\":\n depth -= 1\n elif depth == 0: # an OR joining two top-level parts\n parts.append(predicate[start : match.start()])\n start = match.end()\n parts.append(predicate[start:])\n return parts\n\n\ndef _node_patterns(pattern: str) -> list[str]:\n \"\"\"The inside of every node pattern in a MATCH, from `(` to its `)`.\n\n Relationship patterns use square brackets and are skipped: an edge alias\n produces no node, so it carries nothing that could be returned.\n \"\"\"\n insides, depth, start = [], 0, None\n for index, char in enumerate(pattern):\n if char == \"(\":\n if depth == 0:\n start = index + 1\n depth += 1\n elif char == \")\":\n depth -= 1\n if depth == 0 and start is not None:\n insides.append(pattern[start:index])\n start = None\n return insides\n\n\ndef _where_scoped_aliases(predicate: str, candidates: set[str]) -> set[str]:\n \"\"\"Which of `candidates` this WHERE actually constrains to the session.\n\n An alias counts only when every top-level OR part carries its equality,\n and only when the predicate holds no NOT: reading around a negation needs\n the AST this guard deliberately does not have, so it refuses instead.\n \"\"\"\n if _NOT_RE.search(predicate):\n return set()\n parts = _top_level_or_parts(predicate)\n scoped = set()\n for alias in candidates:\n equality = re.compile(\n rf\"\\b{re.escape(alias)}\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE\n )\n if all(equality.search(part) for part in parts):\n scoped.add(alias)\n return scoped\n\n\ndef _body_is_scoped(pattern: str, predicate: str) -> bool:\n \"\"\"Whether one MATCH restricts every node it names to this session.\"\"\"\n # Two independent patterns, of which only one need be scoped.\n if _has_top_level_comma(pattern):\n return False\n\n named = []\n for inside in _node_patterns(pattern):\n alias = _NODE_ALIAS_RE.match(inside)\n if alias:\n named.append((alias.group(1), inside))\n # Nothing named means nothing this guard can vouch for.\n if not named:\n return False\n\n where_scoped = _where_scoped_aliases(predicate, {alias for alias, _ in named})\n return all(\n _SESSION_INLINE_RE.search(inside) or alias in where_scoped\n for alias, inside in named\n )\n\n\ndef _is_session_scoped(query: str) -> bool:\n \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n bare = _MASKED_RE.sub(_blank, query)\n\n # A clause runs to whichever clause opens next. WHERE is not in that list,\n # so a MATCH clause carries its own WHERE and nothing else: a predicate\n # sitting in RETURN falls outside the MATCH it appears to qualify.\n bodies = []\n for match in _CLAUSE_RE.finditer(bare):\n keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n continue\n nxt = _CLAUSE_RE.search(bare, match.end())\n bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n\n if not bodies:\n return False\n\n for body in bodies:\n where = _WHERE_RE.search(body)\n pattern, predicate = (\n (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n )\n if not _body_is_scoped(pattern, predicate):\n return False\n return True\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n # Validate rel_type before interpolating into Cypher to prevent injection.\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n Every node a MATCH names must be scoped, with {session: $sess} in its own\n pattern or WHERE .session = $sess. Both ends of a hop count.\"\"\"\n q = cypher.strip()\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n # Each MATCH must scope every node it names, in the pattern or its WHERE.\n if not _is_session_scoped(q):\n return (\n \"Every node a MATCH names must be scoped to the current session, \"\n \"with either {session: $sess} in its own pattern or WHERE \"\n \".session = $sess naming it. Both ends of a relationship \"\n \"count, because an edge may point at another session's node. \"\n \"Independent patterns in one MATCH (comma-separated) are refused: \"\n \"write them as separate scoped MATCH clauses. A WHERE carrying the \"\n \"scope may not use OR or NOT; put {session: $sess} in the pattern \"\n \"instead and the rest of the WHERE is free.\"\n )\n # Enforce a result cap so agents cannot dump the entire graph.\n # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n # or append LIMIT 20 when no LIMIT clause is present.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n if extra_params:\n return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # Respect caller-provided non-terminal LIMIT clauses;\n # appending a second LIMIT would produce invalid Cypher.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n rows = client.cypher(q, params={\"sess\": SESSION})\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n # Every node on the path is checked, not just the endpoints. Nodes carry\n # their session from `save_fact`, so a path through a node belonging to\n # another session is refused rather than returned by way of its ends.\n rows = client.cypher(\n f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name, \"sess\": SESSION},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n params={\"sess\": SESSION},\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(f\"Session: {SESSION}\")\nprint(\"Tools:\", [t.name for t in tools])" }, { "cell_type": "markdown", "id": "guard-581f55ed", "metadata": {}, - "source": "### The guard, checked\n\n`query_facts` runs whatever Cypher the model writes, so the scope check is the\nonly thing keeping one session out of another's facts. The queries below are\nthe ones that fooled earlier versions of it, and each has to be refused now: a\npredicate placed in `RETURN` rather than `WHERE`, one hidden in a\nbacktick-quoted alias, one inside a string literal, one commented out in each\nof Cypher's two comment forms, one that ends its string early with an escaped\nquote, three where a single scoped pattern is used to vouch for an unscoped\none beside it, three where the scope is written into the `WHERE` but then\ndisjoined or negated away so that it narrows nothing, and two where it names\nan alias belonging to an earlier clause and so constrains nothing in the\n`MATCH` it sits on. Alongside them sit the queries that must keep working,\nincluding a bracketed `OR` that leaves the scope intact. This runs on every\nexecution, so a loosened rule fails here rather than in front of a user.\n" + "source": "### The guard, checked\n\n`query_facts` runs whatever Cypher the model writes, so the scope check is the\nonly thing keeping one session out of another's facts. The queries below are\nthe ones that fooled earlier versions of it, and each has to be refused now: a\npredicate placed in `RETURN` rather than `WHERE`, one hidden in a\nbacktick-quoted alias, one inside a string literal, one commented out in each\nof Cypher's two comment forms, one that ends its string early with an escaped\nquote, three where a single scoped pattern is used to vouch for an unscoped\none beside it, three where the scope is written into the `WHERE` but then\ndisjoined or negated away so that it narrows nothing, two where it names an\nalias belonging to an earlier clause, and two where only one end of a\nrelationship is scoped so the far end comes back unfiltered.\n\nAlongside them sit the queries that must keep working, including a bracketed\n`OR` that leaves the scope intact and a hop whose two ends are scoped by\ndifferent means. This runs on every execution, so a loosened rule fails here\nrather than in front of a user.\n" }, { "cell_type": "code", "id": "guard-6f7de8b1", "metadata": {}, - "source": "scoped = [\n \"MATCH (n) WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n \"MATCH (n {session: $sess}) RETURN n\",\n \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n # A comment must not swallow the predicate next to it.\n \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n # '//' inside a string opens no comment, and an escaped quote does not\n # end the string early.\n \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n # A bracketed OR is one term of the AND, so the scope still holds for\n # every row: refusing this would cost the agent a retry for nothing.\n \"MATCH (n) WHERE n.session = $sess AND (n.a OR n.b) RETURN n\",\n # OR and NOT are free once the scope is in the pattern, where no\n # predicate can undo it.\n \"MATCH (n {session: $sess}) WHERE NOT n.archived OR n.pinned RETURN n\",\n # Both aliases belong to this pattern, and both are scoped.\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess AND b.session = $sess RETURN a, b\",\n]\nunscoped = [\n \"MATCH (n) RETURN n\",\n \"MATCH (n) WHERE n.session = $other RETURN n\",\n \"MATCH (n {sessionish: $sess}) RETURN n\",\n \"RETURN $sess\",\n # The predicate is in RETURN, not in the WHERE it appears to qualify.\n \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n # Same clause boundary, reached through a map literal: RETURN is where\n # this {session: $sess} sits, so it names a value and filters nothing.\n \"MATCH (n) RETURN n, coalesce({session: $sess}, {}) AS marker\",\n # The whole predicate is an alias, so it is a name and not a filter.\n \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n # A string literal is data; it restricts nothing.\n \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n # The engine ignores both comment forms, so neither restricts anything.\n \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n # The escape keeps the literal open, so the text after it is still data.\n r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n # One scoped pattern does not vouch for the unscoped one beside it: each\n # of these returns every session's nodes through the unscoped alias.\n \"MATCH (n), (m {session: $sess}) RETURN n\",\n \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n # Present in the WHERE but not constraining it: the first is true for\n # every row, the second returns exactly the other sessions' rows, and\n # the third is (scope AND a) OR b, which b alone satisfies.\n \"MATCH (n) WHERE n.session = $sess OR true RETURN n\",\n \"MATCH (n) WHERE NOT n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess AND n.a OR n.b RETURN n\",\n # The equality names an alias from an earlier clause, so it re-states a\n # scope that already holds and leaves n free to match every session.\n \"MATCH (m {session: $sess}) MATCH (n) WHERE m.session = $sess RETURN n\",\n \"MATCH (m) WHERE m.session = $sess MATCH (n) WHERE m.session = $sess RETURN n\",\n]\n\nwrong = [q for q in scoped if not _is_session_scoped(q)]\nwrong += [q for q in unscoped if _is_session_scoped(q)]\nif wrong:\n raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\nprint(f\"guard agrees on all {len(scoped) + len(unscoped)} queries\")", + "source": "scoped = [\n \"MATCH (n) WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n \"MATCH (n {session: $sess}) RETURN n\",\n \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n # A comment must not swallow the predicate next to it.\n \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n # '//' inside a string opens no comment, and an escaped quote does not\n # end the string early.\n \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n # A bracketed OR is one term of the AND, so the scope still holds for\n # every row: refusing this would cost the agent a retry for nothing.\n \"MATCH (n) WHERE n.session = $sess AND (n.a OR n.b) RETURN n\",\n # OR and NOT are free once the scope is in the pattern, where no\n # predicate can undo it.\n \"MATCH (n {session: $sess}) WHERE NOT n.archived OR n.pinned RETURN n\",\n # Both ends of the hop are named, and both are scoped: once in the\n # pattern, once through the WHERE.\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess AND b.session = $sess RETURN a, b\",\n \"MATCH (a {session: $sess})-[r]->(b) WHERE b.session = $sess RETURN b\",\n # An anonymous end binds no name, so nothing can return it.\n \"MATCH (a {session: $sess})-[:KNOWS]->() RETURN a\",\n]\nunscoped = [\n \"MATCH (n) RETURN n\",\n \"MATCH (n) WHERE n.session = $other RETURN n\",\n \"MATCH (n {sessionish: $sess}) RETURN n\",\n \"RETURN $sess\",\n # The predicate is in RETURN, not in the WHERE it appears to qualify.\n \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n # Same clause boundary, reached through a map literal: RETURN is where\n # this {session: $sess} sits, so it names a value and filters nothing.\n \"MATCH (n) RETURN n, coalesce({session: $sess}, {}) AS marker\",\n # The whole predicate is an alias, so it is a name and not a filter.\n \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n # A string literal is data; it restricts nothing.\n \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n # The engine ignores both comment forms, so neither restricts anything.\n \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n # The escape keeps the literal open, so the text after it is still data.\n r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n # One scoped pattern does not vouch for the unscoped one beside it: each\n # of these returns every session's nodes through the unscoped alias.\n \"MATCH (n), (m {session: $sess}) RETURN n\",\n \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n # Present in the WHERE but not constraining it: the first is true for\n # every row, the second returns exactly the other sessions' rows, and\n # the third is (scope AND a) OR b, which b alone satisfies.\n \"MATCH (n) WHERE n.session = $sess OR true RETURN n\",\n \"MATCH (n) WHERE NOT n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess AND n.a OR n.b RETURN n\",\n # The equality names an alias from an earlier clause, so it re-states a\n # scope that already holds and leaves n free to match every session.\n \"MATCH (m {session: $sess}) MATCH (n) WHERE m.session = $sess RETURN n\",\n \"MATCH (m) WHERE m.session = $sess MATCH (n) WHERE m.session = $sess RETURN n\",\n # Only one end of the hop is scoped. Nothing stops an edge from pointing\n # at another session's node, so the far end comes back unfiltered.\n \"MATCH (a {session: $sess})-[r]->(b) RETURN b\",\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess RETURN b\",\n]\n\nwrong = [q for q in scoped if not _is_session_scoped(q)]\nwrong += [q for q in unscoped if _is_session_scoped(q)]\nif wrong:\n raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\nprint(f\"guard agrees on all {len(scoped) + len(unscoped)} queries\")", "execution_count": null, "outputs": [] }, From 56d718e3f273b7dbaec6e7c4adfeec518e07c9f5 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 15:56:01 +0300 Subject: [PATCH 44/56] docs(ci): record why --no-build keeps the workspace installable The flag reads as though it would block the editable workspace members, and a reviewer read it that way. It does not: --no-build refuses source distributions of dependencies, while a local editable install goes through regardless. Checked both ways rather than argued: a sync with an empty UV_CACHE_DIR into a fresh environment installs all three workspace packages and imports them, and the lint, test and integration jobs have run green with the flag on a clean runner. The note carries that evidence so the next reader does not remove the flag on the wording alone. --- .github/workflows/ci.yml | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 4b7c34f..d5f8522 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -19,8 +19,15 @@ jobs: # --locked fails the job when uv.lock does not match pyproject, so CI # resolves exactly what a developer resolved rather than picking up a # newer release mid-run. --no-build installs from wheels only, which - # keeps a dependency's setup.py from executing on the runner. Workspace - # members still install, so the pair costs nothing here. + # keeps a dependency's setup.py from executing on the runner. + # + # The editable workspace members install regardless: --no-build refuses + # source distributions of dependencies, not a local editable install. + # Verified both ways, since the flag reads as though it would block them: + # a sync with an empty UV_CACHE_DIR into a fresh environment installs + # coordinode, langchain-coordinode and llama-index-graph-stores-coordinode + # and imports them, and every job below has run green with the flag on a + # clean runner. Remove it only with evidence, not on the wording. - run: uv sync --locked --no-build - run: uv run --locked --no-build ruff check coordinode/ langchain-coordinode/ llama-index-coordinode/ tests/ - run: uv run --locked --no-build ruff format --check coordinode/ langchain-coordinode/ llama-index-coordinode/ tests/ From b2587c4baf60ac5bc1fc724a0479ba41522ec0d0 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 16:03:09 +0300 Subject: [PATCH 45/56] fix(demo): bound the work the scope guard will do on one query Masking quoted spans costs O(n^2) on input that opens a quote and never closes it: the scan restarts at each position, runs to the end looking for the closing quote, and fails. 40 KB of that shape took 6.5 seconds to judge, and the model writes these queries, so the input is not ours to trust. Rewriting the pattern does not help, which is worth recording because it is the obvious first move: the unrolled `'[^'\]*(?:\\.[^'\]*)*'` form measures the same 6.5 seconds, since the cost is in re-scanning for a delimiter that is not there rather than in backtracking within the star. Bounding the input does help. Queries over 2000 characters are refused before any scanning, in the guard itself so every caller is covered and in the tool with a message the model can act on. At the cap the same adversarial shape takes 15 ms, and the longest query this demo sends is 67 characters. The checked list gains an over-length query, and a timing assertion that fails loudly if the cap is ever removed: without it that check measures 6.5 seconds against its 1 second bound. --- demo/notebooks/03_langgraph_agent.ipynb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index bd25010..5eab1de 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -160,7 +160,7 @@ "id": "6", "metadata": {}, "outputs": [], - "source": "import os, re, uuid\nfrom langchain_core.tools import tool\n\nSESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n# Regex guards for query_facts (demo safety guard).\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n# thing keeping one session out of another's facts, so it is built to refuse\n# rather than to approve. Every way a query slipped past an earlier version:\n#\n# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n# WHERE true /* n.session = $sess */ commented out, so ignored\n# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n# WHERE n.session = $sess OR true disjoined away\n# WHERE NOT n.session = $sess inverted into its opposite\n# MATCH (m {session: $sess}) MATCH (n)\n# WHERE m.session = $sess an alias from another clause\n# MATCH (a {session: $sess})-[r]->(b) RETURN b only one end of the hop\n#\n# So: quoted spans and comments are blanked in one left-to-right pass, with\n# backslash escapes honoured, then EVERY node a MATCH names carries the scope\n# itself, in its own pattern or through a WHERE that no OR or NOT can undo.\n#\n# The last line is why per-node rather than per-clause. Nothing stops an edge\n# from pointing at a node of another session, so a hop with one scoped end\n# returns the other end unfiltered. Requiring only \"some alias here is scoped\"\n# hands that data straight back.\n#\n# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n# node, because proving that needs the AST. A guard that refuses a valid\n# query costs the agent one retry; one that admits an invalid query leaks.\n#\n# Known limit: an anonymous node binds no name, so nothing can return it and\n# it is not required to carry the scope. A path variable could still expose\n# one through `nodes(p)`, which is why `find_related` builds its own query\n# with an explicit ALL(...) over the path instead of coming through here.\n_MASKED_RE = re.compile(\n r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n re.DOTALL,\n)\n_CLAUSE_RE = re.compile(\n r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n re.IGNORECASE,\n)\n_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n# `{... session: $sess ...}` inside one node pattern. Scope written there is\n# structural: it binds that node, and no predicate can undo it.\n_SESSION_INLINE_RE = re.compile(r\"\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\", re.IGNORECASE)\n# The name a node pattern binds, when it binds one: `(n:Entity {...})` gives\n# `n`, while `(:Entity)` and `()` give nothing.\n_NODE_ALIAS_RE = re.compile(r\"\\s*([A-Za-z_]\\w*)\")\n_NOT_RE = re.compile(r\"\\bNOT\\b\", re.IGNORECASE)\n# Brackets and the OR keyword, so a predicate can be walked with a depth count.\n_OR_SCAN_RE = re.compile(r\"[([{]|[)\\]}]|\\bOR\\b\", re.IGNORECASE)\n\n\ndef _blank(match: re.Match) -> str:\n \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n text = match.group(0)\n return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n\n\ndef _has_top_level_comma(pattern: str) -> bool:\n \"\"\"Whether the pattern holds a comma outside any bracket.\n\n That comma separates two independent patterns, and only one of them may\n be scoped. Quoted spans are already blanked, so no comma here is data.\n \"\"\"\n depth = 0\n for char in pattern:\n if char in \"([{\":\n depth += 1\n elif char in \")]}\":\n depth -= 1\n elif char == \",\" and depth == 0:\n return True\n return False\n\n\ndef _top_level_or_parts(predicate: str) -> list[str]:\n \"\"\"Split a predicate on the OR keywords that sit outside every bracket.\n\n AND binds tighter than OR, so the predicate holds whenever any one of\n these parts holds. A part without the session equality therefore admits\n rows on its own, whatever the parts beside it say: `n.session = $sess OR\n true` filters nothing at all. Each part has to carry the scope itself.\n \"\"\"\n parts, depth, start = [], 0, 0\n for match in _OR_SCAN_RE.finditer(predicate):\n token = match.group(0)\n if token in \"([{\":\n depth += 1\n elif token in \")]}\":\n depth -= 1\n elif depth == 0: # an OR joining two top-level parts\n parts.append(predicate[start : match.start()])\n start = match.end()\n parts.append(predicate[start:])\n return parts\n\n\ndef _node_patterns(pattern: str) -> list[str]:\n \"\"\"The inside of every node pattern in a MATCH, from `(` to its `)`.\n\n Relationship patterns use square brackets and are skipped: an edge alias\n produces no node, so it carries nothing that could be returned.\n \"\"\"\n insides, depth, start = [], 0, None\n for index, char in enumerate(pattern):\n if char == \"(\":\n if depth == 0:\n start = index + 1\n depth += 1\n elif char == \")\":\n depth -= 1\n if depth == 0 and start is not None:\n insides.append(pattern[start:index])\n start = None\n return insides\n\n\ndef _where_scoped_aliases(predicate: str, candidates: set[str]) -> set[str]:\n \"\"\"Which of `candidates` this WHERE actually constrains to the session.\n\n An alias counts only when every top-level OR part carries its equality,\n and only when the predicate holds no NOT: reading around a negation needs\n the AST this guard deliberately does not have, so it refuses instead.\n \"\"\"\n if _NOT_RE.search(predicate):\n return set()\n parts = _top_level_or_parts(predicate)\n scoped = set()\n for alias in candidates:\n equality = re.compile(\n rf\"\\b{re.escape(alias)}\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE\n )\n if all(equality.search(part) for part in parts):\n scoped.add(alias)\n return scoped\n\n\ndef _body_is_scoped(pattern: str, predicate: str) -> bool:\n \"\"\"Whether one MATCH restricts every node it names to this session.\"\"\"\n # Two independent patterns, of which only one need be scoped.\n if _has_top_level_comma(pattern):\n return False\n\n named = []\n for inside in _node_patterns(pattern):\n alias = _NODE_ALIAS_RE.match(inside)\n if alias:\n named.append((alias.group(1), inside))\n # Nothing named means nothing this guard can vouch for.\n if not named:\n return False\n\n where_scoped = _where_scoped_aliases(predicate, {alias for alias, _ in named})\n return all(\n _SESSION_INLINE_RE.search(inside) or alias in where_scoped\n for alias, inside in named\n )\n\n\ndef _is_session_scoped(query: str) -> bool:\n \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n bare = _MASKED_RE.sub(_blank, query)\n\n # A clause runs to whichever clause opens next. WHERE is not in that list,\n # so a MATCH clause carries its own WHERE and nothing else: a predicate\n # sitting in RETURN falls outside the MATCH it appears to qualify.\n bodies = []\n for match in _CLAUSE_RE.finditer(bare):\n keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n continue\n nxt = _CLAUSE_RE.search(bare, match.end())\n bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n\n if not bodies:\n return False\n\n for body in bodies:\n where = _WHERE_RE.search(body)\n pattern, predicate = (\n (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n )\n if not _body_is_scoped(pattern, predicate):\n return False\n return True\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n # Validate rel_type before interpolating into Cypher to prevent injection.\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n Every node a MATCH names must be scoped, with {session: $sess} in its own\n pattern or WHERE .session = $sess. Both ends of a hop count.\"\"\"\n q = cypher.strip()\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n # Each MATCH must scope every node it names, in the pattern or its WHERE.\n if not _is_session_scoped(q):\n return (\n \"Every node a MATCH names must be scoped to the current session, \"\n \"with either {session: $sess} in its own pattern or WHERE \"\n \".session = $sess naming it. Both ends of a relationship \"\n \"count, because an edge may point at another session's node. \"\n \"Independent patterns in one MATCH (comma-separated) are refused: \"\n \"write them as separate scoped MATCH clauses. A WHERE carrying the \"\n \"scope may not use OR or NOT; put {session: $sess} in the pattern \"\n \"instead and the rest of the WHERE is free.\"\n )\n # Enforce a result cap so agents cannot dump the entire graph.\n # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n # or append LIMIT 20 when no LIMIT clause is present.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n if extra_params:\n return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # Respect caller-provided non-terminal LIMIT clauses;\n # appending a second LIMIT would produce invalid Cypher.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n rows = client.cypher(q, params={\"sess\": SESSION})\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n # Every node on the path is checked, not just the endpoints. Nodes carry\n # their session from `save_fact`, so a path through a node belonging to\n # another session is refused rather than returned by way of its ends.\n rows = client.cypher(\n f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name, \"sess\": SESSION},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n params={\"sess\": SESSION},\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(f\"Session: {SESSION}\")\nprint(\"Tools:\", [t.name for t in tools])" + "source": "import os, re, uuid\nfrom langchain_core.tools import tool\n\nSESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n# Regex guards for query_facts (demo safety guard).\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Longest query this guard will look at. Masking quoted spans costs O(n^2) on\n# input that opens a quote and never closes it: the scan restarts at each\n# position, runs to the end looking for the closing quote, and fails. That is\n# a property of scanning for a delimiter that is not there, not of any one\n# pattern, so no rewrite of the regex below removes it; bounding the input\n# does. The model writes these queries, so the bound has to hold for text the\n# demo did not choose. 40 KB of unterminated quote took 6.5 s to judge; at the\n# cap the same shape takes 15 ms, and the longest query the demo itself sends\n# is 67 characters.\n_MAX_QUERY_CHARS = 2000\n# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n# thing keeping one session out of another's facts, so it is built to refuse\n# rather than to approve. Every way a query slipped past an earlier version:\n#\n# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n# WHERE true /* n.session = $sess */ commented out, so ignored\n# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n# WHERE n.session = $sess OR true disjoined away\n# WHERE NOT n.session = $sess inverted into its opposite\n# MATCH (m {session: $sess}) MATCH (n)\n# WHERE m.session = $sess an alias from another clause\n# MATCH (a {session: $sess})-[r]->(b) RETURN b only one end of the hop\n#\n# So: quoted spans and comments are blanked in one left-to-right pass, with\n# backslash escapes honoured, then EVERY node a MATCH names carries the scope\n# itself, in its own pattern or through a WHERE that no OR or NOT can undo.\n#\n# The last line is why per-node rather than per-clause. Nothing stops an edge\n# from pointing at a node of another session, so a hop with one scoped end\n# returns the other end unfiltered. Requiring only \"some alias here is scoped\"\n# hands that data straight back.\n#\n# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n# node, because proving that needs the AST. A guard that refuses a valid\n# query costs the agent one retry; one that admits an invalid query leaks.\n#\n# Known limit: an anonymous node binds no name, so nothing can return it and\n# it is not required to carry the scope. A path variable could still expose\n# one through `nodes(p)`, which is why `find_related` builds its own query\n# with an explicit ALL(...) over the path instead of coming through here.\n_MASKED_RE = re.compile(\n r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n re.DOTALL,\n)\n_CLAUSE_RE = re.compile(\n r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n re.IGNORECASE,\n)\n_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n# `{... session: $sess ...}` inside one node pattern. Scope written there is\n# structural: it binds that node, and no predicate can undo it.\n_SESSION_INLINE_RE = re.compile(r\"\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\", re.IGNORECASE)\n# The name a node pattern binds, when it binds one: `(n:Entity {...})` gives\n# `n`, while `(:Entity)` and `()` give nothing.\n_NODE_ALIAS_RE = re.compile(r\"\\s*([A-Za-z_]\\w*)\")\n_NOT_RE = re.compile(r\"\\bNOT\\b\", re.IGNORECASE)\n# Brackets and the OR keyword, so a predicate can be walked with a depth count.\n_OR_SCAN_RE = re.compile(r\"[([{]|[)\\]}]|\\bOR\\b\", re.IGNORECASE)\n\n\ndef _blank(match: re.Match) -> str:\n \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n text = match.group(0)\n return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n\n\ndef _has_top_level_comma(pattern: str) -> bool:\n \"\"\"Whether the pattern holds a comma outside any bracket.\n\n That comma separates two independent patterns, and only one of them may\n be scoped. Quoted spans are already blanked, so no comma here is data.\n \"\"\"\n depth = 0\n for char in pattern:\n if char in \"([{\":\n depth += 1\n elif char in \")]}\":\n depth -= 1\n elif char == \",\" and depth == 0:\n return True\n return False\n\n\ndef _top_level_or_parts(predicate: str) -> list[str]:\n \"\"\"Split a predicate on the OR keywords that sit outside every bracket.\n\n AND binds tighter than OR, so the predicate holds whenever any one of\n these parts holds. A part without the session equality therefore admits\n rows on its own, whatever the parts beside it say: `n.session = $sess OR\n true` filters nothing at all. Each part has to carry the scope itself.\n \"\"\"\n parts, depth, start = [], 0, 0\n for match in _OR_SCAN_RE.finditer(predicate):\n token = match.group(0)\n if token in \"([{\":\n depth += 1\n elif token in \")]}\":\n depth -= 1\n elif depth == 0: # an OR joining two top-level parts\n parts.append(predicate[start : match.start()])\n start = match.end()\n parts.append(predicate[start:])\n return parts\n\n\ndef _node_patterns(pattern: str) -> list[str]:\n \"\"\"The inside of every node pattern in a MATCH, from `(` to its `)`.\n\n Relationship patterns use square brackets and are skipped: an edge alias\n produces no node, so it carries nothing that could be returned.\n \"\"\"\n insides, depth, start = [], 0, None\n for index, char in enumerate(pattern):\n if char == \"(\":\n if depth == 0:\n start = index + 1\n depth += 1\n elif char == \")\":\n depth -= 1\n if depth == 0 and start is not None:\n insides.append(pattern[start:index])\n start = None\n return insides\n\n\ndef _where_scoped_aliases(predicate: str, candidates: set[str]) -> set[str]:\n \"\"\"Which of `candidates` this WHERE actually constrains to the session.\n\n An alias counts only when every top-level OR part carries its equality,\n and only when the predicate holds no NOT: reading around a negation needs\n the AST this guard deliberately does not have, so it refuses instead.\n \"\"\"\n if _NOT_RE.search(predicate):\n return set()\n parts = _top_level_or_parts(predicate)\n scoped = set()\n for alias in candidates:\n equality = re.compile(\n rf\"\\b{re.escape(alias)}\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE\n )\n if all(equality.search(part) for part in parts):\n scoped.add(alias)\n return scoped\n\n\ndef _body_is_scoped(pattern: str, predicate: str) -> bool:\n \"\"\"Whether one MATCH restricts every node it names to this session.\"\"\"\n # Two independent patterns, of which only one need be scoped.\n if _has_top_level_comma(pattern):\n return False\n\n named = []\n for inside in _node_patterns(pattern):\n alias = _NODE_ALIAS_RE.match(inside)\n if alias:\n named.append((alias.group(1), inside))\n # Nothing named means nothing this guard can vouch for.\n if not named:\n return False\n\n where_scoped = _where_scoped_aliases(predicate, {alias for alias, _ in named})\n return all(\n _SESSION_INLINE_RE.search(inside) or alias in where_scoped\n for alias, inside in named\n )\n\n\ndef _is_session_scoped(query: str) -> bool:\n \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n # Before any scanning: past the cap the masking pass turns quadratic, so\n # the guard refuses rather than spends. Every caller is bounded here, not\n # only the tool below.\n if len(query) > _MAX_QUERY_CHARS:\n return False\n\n bare = _MASKED_RE.sub(_blank, query)\n\n # A clause runs to whichever clause opens next. WHERE is not in that list,\n # so a MATCH clause carries its own WHERE and nothing else: a predicate\n # sitting in RETURN falls outside the MATCH it appears to qualify.\n bodies = []\n for match in _CLAUSE_RE.finditer(bare):\n keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n continue\n nxt = _CLAUSE_RE.search(bare, match.end())\n bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n\n if not bodies:\n return False\n\n for body in bodies:\n where = _WHERE_RE.search(body)\n pattern, predicate = (\n (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n )\n if not _body_is_scoped(pattern, predicate):\n return False\n return True\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n # Validate rel_type before interpolating into Cypher to prevent injection.\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n Every node a MATCH names must be scoped, with {session: $sess} in its own\n pattern or WHERE .session = $sess. Both ends of a hop count.\"\"\"\n q = cypher.strip()\n # Length first, so nothing below scans an unbounded string.\n if len(q) > _MAX_QUERY_CHARS:\n return (\n f\"Query is {len(q)} characters, over the {_MAX_QUERY_CHARS} this tool \"\n \"accepts. Ask for what you need in a smaller query.\"\n )\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n # Each MATCH must scope every node it names, in the pattern or its WHERE.\n if not _is_session_scoped(q):\n return (\n \"Every node a MATCH names must be scoped to the current session, \"\n \"with either {session: $sess} in its own pattern or WHERE \"\n \".session = $sess naming it. Both ends of a relationship \"\n \"count, because an edge may point at another session's node. \"\n \"Independent patterns in one MATCH (comma-separated) are refused: \"\n \"write them as separate scoped MATCH clauses. A WHERE carrying the \"\n \"scope may not use OR or NOT; put {session: $sess} in the pattern \"\n \"instead and the rest of the WHERE is free.\"\n )\n # Enforce a result cap so agents cannot dump the entire graph.\n # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n # or append LIMIT 20 when no LIMIT clause is present.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n if extra_params:\n return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # Respect caller-provided non-terminal LIMIT clauses;\n # appending a second LIMIT would produce invalid Cypher.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n rows = client.cypher(q, params={\"sess\": SESSION})\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n # Every node on the path is checked, not just the endpoints. Nodes carry\n # their session from `save_fact`, so a path through a node belonging to\n # another session is refused rather than returned by way of its ends.\n rows = client.cypher(\n f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name, \"sess\": SESSION},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n params={\"sess\": SESSION},\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(f\"Session: {SESSION}\")\nprint(\"Tools:\", [t.name for t in tools])" }, { "cell_type": "markdown", @@ -172,7 +172,7 @@ "cell_type": "code", "id": "guard-6f7de8b1", "metadata": {}, - "source": "scoped = [\n \"MATCH (n) WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n \"MATCH (n {session: $sess}) RETURN n\",\n \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n # A comment must not swallow the predicate next to it.\n \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n # '//' inside a string opens no comment, and an escaped quote does not\n # end the string early.\n \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n # A bracketed OR is one term of the AND, so the scope still holds for\n # every row: refusing this would cost the agent a retry for nothing.\n \"MATCH (n) WHERE n.session = $sess AND (n.a OR n.b) RETURN n\",\n # OR and NOT are free once the scope is in the pattern, where no\n # predicate can undo it.\n \"MATCH (n {session: $sess}) WHERE NOT n.archived OR n.pinned RETURN n\",\n # Both ends of the hop are named, and both are scoped: once in the\n # pattern, once through the WHERE.\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess AND b.session = $sess RETURN a, b\",\n \"MATCH (a {session: $sess})-[r]->(b) WHERE b.session = $sess RETURN b\",\n # An anonymous end binds no name, so nothing can return it.\n \"MATCH (a {session: $sess})-[:KNOWS]->() RETURN a\",\n]\nunscoped = [\n \"MATCH (n) RETURN n\",\n \"MATCH (n) WHERE n.session = $other RETURN n\",\n \"MATCH (n {sessionish: $sess}) RETURN n\",\n \"RETURN $sess\",\n # The predicate is in RETURN, not in the WHERE it appears to qualify.\n \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n # Same clause boundary, reached through a map literal: RETURN is where\n # this {session: $sess} sits, so it names a value and filters nothing.\n \"MATCH (n) RETURN n, coalesce({session: $sess}, {}) AS marker\",\n # The whole predicate is an alias, so it is a name and not a filter.\n \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n # A string literal is data; it restricts nothing.\n \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n # The engine ignores both comment forms, so neither restricts anything.\n \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n # The escape keeps the literal open, so the text after it is still data.\n r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n # One scoped pattern does not vouch for the unscoped one beside it: each\n # of these returns every session's nodes through the unscoped alias.\n \"MATCH (n), (m {session: $sess}) RETURN n\",\n \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n # Present in the WHERE but not constraining it: the first is true for\n # every row, the second returns exactly the other sessions' rows, and\n # the third is (scope AND a) OR b, which b alone satisfies.\n \"MATCH (n) WHERE n.session = $sess OR true RETURN n\",\n \"MATCH (n) WHERE NOT n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess AND n.a OR n.b RETURN n\",\n # The equality names an alias from an earlier clause, so it re-states a\n # scope that already holds and leaves n free to match every session.\n \"MATCH (m {session: $sess}) MATCH (n) WHERE m.session = $sess RETURN n\",\n \"MATCH (m) WHERE m.session = $sess MATCH (n) WHERE m.session = $sess RETURN n\",\n # Only one end of the hop is scoped. Nothing stops an edge from pointing\n # at another session's node, so the far end comes back unfiltered.\n \"MATCH (a {session: $sess})-[r]->(b) RETURN b\",\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess RETURN b\",\n]\n\nwrong = [q for q in scoped if not _is_session_scoped(q)]\nwrong += [q for q in unscoped if _is_session_scoped(q)]\nif wrong:\n raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\nprint(f\"guard agrees on all {len(scoped) + len(unscoped)} queries\")", + "source": "import time\n\nscoped = [\n \"MATCH (n) WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n \"MATCH (n {session: $sess}) RETURN n\",\n \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n # A comment must not swallow the predicate next to it.\n \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n # '//' inside a string opens no comment, and an escaped quote does not\n # end the string early.\n \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n # A bracketed OR is one term of the AND, so the scope still holds for\n # every row: refusing this would cost the agent a retry for nothing.\n \"MATCH (n) WHERE n.session = $sess AND (n.a OR n.b) RETURN n\",\n # OR and NOT are free once the scope is in the pattern, where no\n # predicate can undo it.\n \"MATCH (n {session: $sess}) WHERE NOT n.archived OR n.pinned RETURN n\",\n # Both ends of the hop are named, and both are scoped: once in the\n # pattern, once through the WHERE.\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess AND b.session = $sess RETURN a, b\",\n \"MATCH (a {session: $sess})-[r]->(b) WHERE b.session = $sess RETURN b\",\n # An anonymous end binds no name, so nothing can return it.\n \"MATCH (a {session: $sess})-[:KNOWS]->() RETURN a\",\n]\nunscoped = [\n \"MATCH (n) RETURN n\",\n \"MATCH (n) WHERE n.session = $other RETURN n\",\n \"MATCH (n {sessionish: $sess}) RETURN n\",\n \"RETURN $sess\",\n # The predicate is in RETURN, not in the WHERE it appears to qualify.\n \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n # Same clause boundary, reached through a map literal: RETURN is where\n # this {session: $sess} sits, so it names a value and filters nothing.\n \"MATCH (n) RETURN n, coalesce({session: $sess}, {}) AS marker\",\n # The whole predicate is an alias, so it is a name and not a filter.\n \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n # A string literal is data; it restricts nothing.\n \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n # The engine ignores both comment forms, so neither restricts anything.\n \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n # The escape keeps the literal open, so the text after it is still data.\n r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n # One scoped pattern does not vouch for the unscoped one beside it: each\n # of these returns every session's nodes through the unscoped alias.\n \"MATCH (n), (m {session: $sess}) RETURN n\",\n \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n # Present in the WHERE but not constraining it: the first is true for\n # every row, the second returns exactly the other sessions' rows, and\n # the third is (scope AND a) OR b, which b alone satisfies.\n \"MATCH (n) WHERE n.session = $sess OR true RETURN n\",\n \"MATCH (n) WHERE NOT n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess AND n.a OR n.b RETURN n\",\n # The equality names an alias from an earlier clause, so it re-states a\n # scope that already holds and leaves n free to match every session.\n \"MATCH (m {session: $sess}) MATCH (n) WHERE m.session = $sess RETURN n\",\n \"MATCH (m) WHERE m.session = $sess MATCH (n) WHERE m.session = $sess RETURN n\",\n # Only one end of the hop is scoped. Nothing stops an edge from pointing\n # at another session's node, so the far end comes back unfiltered.\n \"MATCH (a {session: $sess})-[r]->(b) RETURN b\",\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess RETURN b\",\n # Past the length cap, refused without being read.\n \"MATCH (n {session: $sess}) RETURN n // \" + \"x\" * _MAX_QUERY_CHARS,\n]\n\nwrong = [q for q in scoped if not _is_session_scoped(q)]\nwrong += [q for q in unscoped if _is_session_scoped(q)]\nif wrong:\n raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\n\n# The cap is what keeps the masking pass from going quadratic on a query that\n# opens a quote and never closes it. Without it this shape took seconds; the\n# bound below is loose enough not to flake on a busy machine and tight enough\n# to fail loudly if the cap is ever removed.\nstarted = time.perf_counter()\n_is_session_scoped(\"MATCH (n) WHERE n.x = '\" + \"\\\\'\" * 20000)\nelapsed = time.perf_counter() - started\nif elapsed > 1.0:\n raise RuntimeError(f\"guard took {elapsed:.1f}s on adversarial input; is the length cap gone?\")\n\nprint(f\"guard agrees on all {len(scoped) + len(unscoped)} queries, and bounds its own work\")", "execution_count": null, "outputs": [] }, From 0d4815901cddd6d37d27ebb163a7f32bf74d5652 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 16:23:09 +0300 Subject: [PATCH 46/56] build(embedded): put the compiled extension in the release cycle coordinode-embedded carried a hand-written version = "0.1.0" and was not listed in the release configuration, so it never moved. The three Python packages take their version from the tag through hatch-vcs; maturin has no equivalent and reads Cargo.toml, so every release since the first built a wheel with the same filename, which PyPI refuses as a duplicate. The result is on PyPI right now: every file there was uploaded on 2026-05-03 and nothing since, while this repository has tagged its way to 1.0.6. Anyone installing coordinode-embedded gets a four-month-old engine that cannot parse `MATCH p = (...)`, so the path queries the demo notebooks use fail for them and nowhere else. The release PR now writes the version, the same one the rest of the repository ships under, and the manifest is brought up to it so the file is consistent from here rather than at the next release. A local build names the wheel 1.0.6 instead of 0.1.0. --- coordinode-embedded/Cargo.lock | 2 +- coordinode-embedded/Cargo.toml | 7 ++++++- release-please-config.json | 12 ++++++++++-- 3 files changed, 17 insertions(+), 4 deletions(-) diff --git a/coordinode-embedded/Cargo.lock b/coordinode-embedded/Cargo.lock index 43cddb4..ab3b8fe 100644 --- a/coordinode-embedded/Cargo.lock +++ b/coordinode-embedded/Cargo.lock @@ -575,7 +575,7 @@ dependencies = [ [[package]] name = "coordinode-embedded" -version = "0.1.0" +version = "1.0.6" dependencies = [ "coordinode-core", "coordinode-embed", diff --git a/coordinode-embedded/Cargo.toml b/coordinode-embedded/Cargo.toml index 09b55a8..e7425bf 100644 --- a/coordinode-embedded/Cargo.toml +++ b/coordinode-embedded/Cargo.toml @@ -1,6 +1,11 @@ [package] name = "coordinode-embedded" -version = "0.1.0" +# Written by the release PR, not by hand. It is the one version this repository +# ships under, shared with the three Python packages, which read it from the tag +# through hatch-vcs. maturin has no equivalent and takes the wheel version from +# here, so this line has to move with the release or the wheel keeps the name it +# had last time and PyPI refuses it as a duplicate. +version = "1.0.6" edition = "2021" rust-version = "1.90" description = "CoordiNode embedded Python bindings — in-process graph database, no server required" diff --git a/release-please-config.json b/release-please-config.json index b176df9..02f75e3 100644 --- a/release-please-config.json +++ b/release-please-config.json @@ -5,9 +5,17 @@ "include-component-in-tag": false, "packages": { ".": { - "_comment": "Single shared version for all three workspace packages (coordinode, langchain-coordinode, llama-index-graph-stores-coordinode). release.yml builds and publishes all three from one tag.", + "_comment": "Single shared version for every package this repo ships: the three Python packages (coordinode, langchain-coordinode, llama-index-graph-stores-coordinode) and the compiled extension coordinode-embedded. release.yml builds and publishes all four from one tag.", "component": "sdk", - "changelog-path": "CHANGELOG.md" + "changelog-path": "CHANGELOG.md", + "_extra_files_comment": "The Python packages read their version from the tag through hatch-vcs. maturin has no equivalent: it takes the wheel version from Cargo.toml, so that file has to carry the release version and the release PR is what writes it.", + "extra-files": [ + { + "type": "toml", + "path": "coordinode-embedded/Cargo.toml", + "jsonpath": "$.package.version" + } + ] } }, "versioning": "default", From 48a89acb2ecb030d62de829305b6e91fac3f5fc7 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 16:36:06 +0300 Subject: [PATCH 47/56] refactor(demo): isolate the agent notebook by database, not by filter query_facts runs Cypher the model writes, against what used to be a shared database, so a regex guard had to prove each query stayed inside this run's session tag. Five review rounds found five ways past it: a predicate in RETURN, one inside a quoted alias, one commented out, one disjoined away by OR, one negated, one naming an alias from another clause, one scoping a single end of a hop, and a 40 KB input that took the guard 6.5 seconds to judge. Each fix was correct and the next round found the next gap, because deciding what model-written Cypher touches is not something a regex can do. The notebook now opens its own in-memory database and closes it at the end. Nothing else writes there, so no query can reach another run's data and there is nothing to filter for: the guard, its 36 checked cases and the session tag threaded through every tool are all gone, and 174 lines with them. COORDINODE_ADDR is ignored here on purpose. Pointing this notebook at a shared server would restore exactly the condition the guard existed to police. Notebooks 00 to 02 and 04 exercise the client/server path. The Compose stack cannot run this one yet: its Jupyter image would need coordinode-embedded, and the wheel on PyPI predates the path syntax find_related uses. The README says so and points at Colab or a local run until a release publishes a current wheel. --- demo/README.md | 16 ++- demo/notebooks/03_langgraph_agent.ipynb | 174 ++---------------------- 2 files changed, 21 insertions(+), 169 deletions(-) diff --git a/demo/README.md b/demo/README.md index a44a3ff..8b90538 100644 --- a/demo/README.md +++ b/demo/README.md @@ -12,9 +12,13 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb) **LangGraph** | Agent with CoordiNode as graph memory (save/query/traverse) | nothing | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/04_whats_new_in_0_5.ipynb) **What 0.5 Added** | Batch insert, `element_id`, schema revision, write/read concerns, time travel | a server (`COORDINODE_ADDR`) | -> **Note:** First run installs `coordinode-embedded` from source (Rust build, ~5 min). -> Subsequent runs use Colab's pip cache. -> The embedded Colab install is pinned to a specific commit that bundles coordinode-rs v0.4.1; the Colab notebook links above target `main`. +> **Note:** **LangGraph** runs the engine in-process rather than against a +> server, in a database that exists only for that run. `query_facts` there +> executes Cypher the model writes, and a private database is what makes an +> invented query harmless; the alternative was filtering model-written Cypher +> by a session tag, which leaks the first time the filter misses a case. +> It installs `coordinode-embedded` from PyPI, which is also why it opens in +> Colab with nothing to set up. > The Docker Compose stack below pins the CoordiNode **server** image v0.5.5 by > digest. Do not move it below that: 0.5.1 crashes its Raft core when the oplog > rolls a segment that already exists, and a single-node stack never regains @@ -25,6 +29,12 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. > and the embedded engine has neither Raft nor replicas, so that notebook stops > until `COORDINODE_ADDR` points at a server. Run it against the Docker Compose > stack below. +> +> In the Compose stack, **LangGraph** needs `coordinode-embedded` in the Jupyter +> image. The wheel currently on PyPI predates the path syntax `find_related` +> uses, so the image does not install it yet; run that notebook in Colab or +> locally until a release publishes a current wheel. The other four use the +> server and are unaffected. ## Run locally (Docker Compose) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 5eab1de..3ad644c 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -4,9 +4,7 @@ "cell_type": "markdown", "id": "0", "metadata": {}, - "source": [ - "# LangGraph + CoordiNode: Agent with graph memory\n\n[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb)\n\nDemonstrates a LangGraph agent that uses CoordiNode as persistent **graph memory**:\n- `save_fact` — store a subject → relation → object triple in the graph\n- `query_facts` — run an arbitrary Cypher query against the graph\n- `find_related` — traverse the graph from a given entity\n- `list_all_facts` — dump every fact in the current session\n\n**Works without OpenAI** — the mock demo section calls tools directly. \nSet `OPENAI_API_KEY` to run the full `gpt-4o-mini` ReAct agent.\n\n**Environments:**\n- **Google Colab** — uses `coordinode-embedded` (in-process Rust engine, no server needed). Installs pre-built wheel from PyPI (~30 sec).\n- **Local / Docker Compose** — set `COORDINODE_ADDR=host:port` to connect to a running CoordiNode server via gRPC; otherwise uses embedded with a file-backed `COORDINODE_EMBEDDED_PATH`." - ] + "source": "# LangGraph + CoordiNode: Agent with graph memory\n\n[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb)\n\nDemonstrates a LangGraph agent that uses CoordiNode as persistent **graph memory**:\n- `save_fact`: store a subject → relation → object triple in the graph\n- `query_facts`: run an arbitrary read-only Cypher query against the graph\n- `find_related`: traverse the graph from a given entity\n- `list_all_facts`: dump every fact in the graph\n\n**Works without OpenAI.** The mock demo section calls the tools directly. \nSet `OPENAI_API_KEY` to run the full `gpt-4o-mini` ReAct agent.\n\n**Runs in-process.** The engine is embedded here (`coordinode-embedded`), in a\ndatabase that exists only for this run. That is deliberate: `query_facts`\nexecutes Cypher the model writes, and a private database is what makes an\ninvented query harmless. It needs no server, which is also why the notebook\nopens in Colab with nothing to set up. For the client/server API, see notebooks\n00 to 02 and **What 0.5 Added**.\n" }, { "cell_type": "markdown", @@ -22,78 +20,13 @@ "id": "2", "metadata": {}, "outputs": [], - "source": [ - "import importlib.util, os, shutil, subprocess, sys\n", - "\n", - "IN_COLAB = \"google.colab\" in sys.modules\n", - "\n", - "# (distribution on PyPI, module to import it by).\n", - "pkgs = [\n", - " (\"coordinode\", \"coordinode\"),\n", - " (\"langchain-coordinode\", \"langchain_coordinode\"),\n", - " (\"langchain-community\", \"langchain_community\"),\n", - " (\"langchain-openai\", \"langchain_openai\"),\n", - " (\"langgraph\", \"langgraph\"),\n", - " (\"nest_asyncio\", \"nest_asyncio\"),\n", - "]\n", - "\n", - "if IN_COLAB and not os.environ.get(\"COORDINODE_ADDR\"):\n", - " pkgs.insert(0, (\"coordinode-embedded\", \"coordinode_embedded\"))\n", - "\n", - "# Install only what is missing. A checkout mounted into the image, or an\n", - "# editable install, already provides these; pulling them from PyPI there\n", - "# would shadow the very code the notebook is meant to exercise.\n", - "#\n", - "# find_spec raises rather than returning None when a dotted name's parent\n", - "# package is absent, which is exactly the fresh environment this cell exists\n", - "# for: unguarded, it would abort before installing anything.\n", - "def _missing(module: str) -> bool:\n", - " try:\n", - " return importlib.util.find_spec(module) is None\n", - " except ModuleNotFoundError:\n", - " return True\n", - "\n", - "\n", - "def _install(dists: list[str]) -> None:\n", - " \"\"\"Install into this interpreter with whatever installer it has.\n", - "\n", - " Colab ships pip. A uv-managed venv deliberately does not, and there\n", - " `python -m pip` dies with \"No module named pip\" before the notebook\n", - " reaches its first query, so fall back to uv targeting this same\n", - " interpreter rather than uv's own default environment.\n", - " \"\"\"\n", - " if not _missing(\"pip\"):\n", - " cmd = [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *dists]\n", - " elif shutil.which(\"uv\"):\n", - " cmd = [\"uv\", \"pip\", \"install\", \"-q\", \"--python\", sys.executable, *dists]\n", - " else:\n", - " raise RuntimeError(\n", - " f\"Neither pip nor uv is available to install: {', '.join(dists)}\"\n", - " )\n", - " subprocess.run(cmd, check=True, timeout=300)\n", - "\n", - "\n", - "missing = [dist for dist, mod in pkgs if _missing(mod)]\n", - "if missing:\n", - " _install(missing)\n", - "\n", - "import nest_asyncio\n", - "\n", - "nest_asyncio.apply()\n", - "\n", - "print(\"SDK installed\")\n" - ] + "source": "import importlib.util, os, shutil, subprocess, sys\n\n# (distribution on PyPI, module to import it by).\n# coordinode-embedded is listed unconditionally: this notebook runs the engine\n# in-process so that the graph an agent writes into is private to the run.\npkgs = [\n (\"coordinode-embedded\", \"coordinode_embedded\"),\n (\"langchain-coordinode\", \"langchain_coordinode\"),\n (\"langchain-community\", \"langchain_community\"),\n (\"langchain-openai\", \"langchain_openai\"),\n (\"langgraph\", \"langgraph\"),\n (\"nest_asyncio\", \"nest_asyncio\"),\n]\n\n# Install only what is missing. A checkout mounted into the image, or an\n# editable install, already provides these; pulling them from PyPI there\n# would shadow the very code the notebook is meant to exercise.\n#\n# find_spec raises rather than returning None when a dotted name's parent\n# package is absent, which is exactly the fresh environment this cell exists\n# for: unguarded, it would abort before installing anything.\ndef _missing(module: str) -> bool:\n try:\n return importlib.util.find_spec(module) is None\n except ModuleNotFoundError:\n return True\n\n\ndef _install(dists: list[str]) -> None:\n \"\"\"Install into this interpreter with whatever installer it has.\n\n Colab ships pip. A uv-managed venv deliberately does not, and there\n `python -m pip` dies with \"No module named pip\" before the notebook\n reaches its first query, so fall back to uv targeting this same\n interpreter rather than uv's own default environment.\n \"\"\"\n if not _missing(\"pip\"):\n cmd = [sys.executable, \"-m\", \"pip\", \"install\", \"-q\", *dists]\n elif shutil.which(\"uv\"):\n cmd = [\"uv\", \"pip\", \"install\", \"-q\", \"--python\", sys.executable, *dists]\n else:\n raise RuntimeError(\n f\"Neither pip nor uv is available to install: {', '.join(dists)}\"\n )\n subprocess.run(cmd, check=True, timeout=300)\n # The finder caches a directory listing taken before the install, so a\n # package that has just appeared on disk stays invisible without this.\n importlib.invalidate_caches()\n\n\nmissing = [dist for dist, mod in pkgs if _missing(mod)]\nif missing:\n _install(missing)\n\nimport nest_asyncio\n\nnest_asyncio.apply()\n\nprint(\"SDK installed\")" }, { "cell_type": "markdown", "id": "3", "metadata": {}, - "source": [ - "## Connect to CoordiNode\n", - "\n", - "This notebook uses `.cypher()` directly, which is identical on both `LocalClient`\n", - "(embedded) and `CoordinodeClient` (gRPC). No adapter needed." - ] + "source": "## Open the graph\n\n`LocalClient` runs the engine inside this process and exposes the same\n`.cypher()` as `CoordinodeClient` does over gRPC, so the tools below would read\nidentically against a server. What differs is where the data lives, and here it\nlives in a database of this run's own.\n" }, { "cell_type": "code", @@ -101,58 +34,13 @@ "id": "4", "metadata": {}, "outputs": [], - "source": [ - "import os, tempfile\n", - "\n", - "# Persistent embedded DB path. Colab has /content which persists across cell\n", - "# reruns within a runtime session; locally fall back to the OS temp dir\n", - "# (portable across Linux/macOS/Windows). Override via COORDINODE_EMBEDDED_PATH.\n", - "COORDINODE_EMBEDDED_PATH = os.environ.get(\n", - " \"COORDINODE_EMBEDDED_PATH\",\n", - " \"/content/coordinode-demo.db\"\n", - " if os.path.isdir(\"/content\")\n", - " else os.path.join(tempfile.gettempdir(), \"coordinode-demo.db\"),\n", - ")\n", - "\n", - "if os.environ.get(\"COORDINODE_ADDR\"):\n", - " COORDINODE_ADDR = os.environ[\"COORDINODE_ADDR\"]\n", - " from coordinode import CoordinodeClient\n", - "\n", - " client = CoordinodeClient(COORDINODE_ADDR)\n", - " if not client.health():\n", - " client.close()\n", - " raise RuntimeError(f\"Health check failed for {COORDINODE_ADDR}\")\n", - " print(f\"Connected to {COORDINODE_ADDR}\")\n", - "else:\n", - " # No explicit server — use the embedded in-process engine backed by a file\n", - " # so the graph persists across cell reruns and between sibling demo\n", - " # notebooks within the same runtime.\n", - " try:\n", - " from coordinode_embedded import LocalClient\n", - " except ImportError as exc:\n", - " raise RuntimeError(\n", - " \"coordinode-embedded is not installed. \"\n", - " \"In Colab, rerun the install cell above. \"\n", - " \"Locally, install from source: \"\n", - " \"pip install 'git+https://github.com/structured-world/coordinode-python.git#subdirectory=coordinode-embedded' \"\n", - " \"(requires Rust toolchain, ~5 min build). \"\n", - " \"Alternatively start a CoordiNode server and set COORDINODE_ADDR.\"\n", - " ) from exc\n", - "\n", - " client = LocalClient(COORDINODE_EMBEDDED_PATH)\n", - " print(f\"Using embedded LocalClient at {COORDINODE_EMBEDDED_PATH}\")" - ] + "source": "import os\n\n# This notebook runs the engine in-process, in a database of its own that\n# lives only as long as the run. That is the isolation: an agent writes the\n# Cypher here, and a private database is the only way to be sure a query it\n# invents cannot reach anyone else's data. Filtering by a session tag was the\n# alternative, and a text check over model-written Cypher leaks the moment it\n# misses a case.\n#\n# COORDINODE_ADDR is deliberately ignored. A shared server would put this\n# demo's writes next to everyone else's, which is what the private database\n# exists to avoid. The server API is what notebooks 00 to 02 and 04 exercise.\ntry:\n from coordinode_embedded import LocalClient\nexcept ImportError as exc:\n raise RuntimeError(\n \"coordinode-embedded is not installed, and this notebook runs on it.\\n\"\n \" pip install coordinode-embedded\\n\"\n \"In Colab, rerun the install cell above. To build it from this \"\n \"checkout instead: maturin build --manifest-path coordinode-embedded/\"\n \"Cargo.toml, then install the wheel it prints.\"\n ) from exc\n\nclient = LocalClient(\":memory:\")\nprint(\"Using an in-process database, private to this run\")" }, { "cell_type": "markdown", "id": "5", "metadata": {}, - "source": [ - "## 1. Define LangChain tools\n", - "\n", - "Each tool maps a natural-language action to a Cypher operation.\n", - "A `SESSION` UUID isolates this demo's data from other concurrent runs." - ] + "source": "## 1. Define LangChain tools\n\nEach tool maps a natural-language action to a Cypher operation. `query_facts`\ntakes whatever Cypher the model writes, which is the point of the demo and the\nreason the graph it runs against belongs to this run alone.\n" }, { "cell_type": "code", @@ -160,21 +48,7 @@ "id": "6", "metadata": {}, "outputs": [], - "source": "import os, re, uuid\nfrom langchain_core.tools import tool\n\nSESSION = uuid.uuid4().hex # isolates this demo's data from other sessions\n\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n# Regex guards for query_facts (demo safety guard).\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n# Longest query this guard will look at. Masking quoted spans costs O(n^2) on\n# input that opens a quote and never closes it: the scan restarts at each\n# position, runs to the end looking for the closing quote, and fails. That is\n# a property of scanning for a delimiter that is not there, not of any one\n# pattern, so no rewrite of the regex below removes it; bounding the input\n# does. The model writes these queries, so the bound has to hold for text the\n# demo did not choose. 40 KB of unterminated quote took 6.5 s to judge; at the\n# cap the same shape takes 15 ms, and the longest query the demo itself sends\n# is 67 characters.\n_MAX_QUERY_CHARS = 2000\n# Scope guard. A demo-grade check, not a Cypher parser, but it is the only\n# thing keeping one session out of another's facts, so it is built to refuse\n# rather than to approve. Every way a query slipped past an earlier version:\n#\n# WITH n, n.session = $sess AS unused WHERE true equality before the WHERE\n# WHERE true RETURN n, n.session = $sess AS scoped equality after it, in RETURN\n# RETURN n AS `WHERE n.session = $sess` the whole thing quoted\n# WHERE true /* n.session = $sess */ commented out, so ignored\n# WHERE n.note = 'x \\' .session = $sess' inside an escaped literal\n# MATCH (n), (m {session: $sess}) RETURN n only the second is scoped\n# WHERE n.session = $sess OR true disjoined away\n# WHERE NOT n.session = $sess inverted into its opposite\n# MATCH (m {session: $sess}) MATCH (n)\n# WHERE m.session = $sess an alias from another clause\n# MATCH (a {session: $sess})-[r]->(b) RETURN b only one end of the hop\n#\n# So: quoted spans and comments are blanked in one left-to-right pass, with\n# backslash escapes honoured, then EVERY node a MATCH names carries the scope\n# itself, in its own pattern or through a WHERE that no OR or NOT can undo.\n#\n# The last line is why per-node rather than per-clause. Nothing stops an edge\n# from pointing at a node of another session, so a hop with one scoped end\n# returns the other end unfiltered. Requiring only \"some alias here is scoped\"\n# hands that data straight back.\n#\n# The rule is deliberately strict. `MATCH (a {session: $sess}) OPTIONAL MATCH\n# (a)-[:X]->(b)` is refused even though `b` is reachable only from a scoped\n# node, because proving that needs the AST. A guard that refuses a valid\n# query costs the agent one retry; one that admits an invalid query leaks.\n#\n# Known limit: an anonymous node binds no name, so nothing can return it and\n# it is not required to carry the scope. A path variable could still expose\n# one through `nodes(p)`, which is why `find_related` builds its own query\n# with an explicit ALL(...) over the path instead of coming through here.\n_MASKED_RE = re.compile(\n r\"'(?:\\\\.|[^'\\\\])*'|\\\"(?:\\\\.|[^\\\"\\\\])*\\\"|`[^`]*`|/\\*.*?\\*/|//[^\\n]*\",\n re.DOTALL,\n)\n_CLAUSE_RE = re.compile(\n r\"\\b(OPTIONAL\\s+MATCH|MATCH|RETURN|WITH|ORDER\\s+BY|SKIP|LIMIT|UNION|CALL\"\n r\"|MERGE|CREATE|DELETE|DETACH|SET|REMOVE|UNWIND|FOREACH)\\b\",\n re.IGNORECASE,\n)\n_WHERE_RE = re.compile(r\"\\bWHERE\\b\", re.IGNORECASE)\n# `{... session: $sess ...}` inside one node pattern. Scope written there is\n# structural: it binds that node, and no predicate can undo it.\n_SESSION_INLINE_RE = re.compile(r\"\\{[^{}]*\\bsession\\s*:\\s*\\$sess\\b\", re.IGNORECASE)\n# The name a node pattern binds, when it binds one: `(n:Entity {...})` gives\n# `n`, while `(:Entity)` and `()` give nothing.\n_NODE_ALIAS_RE = re.compile(r\"\\s*([A-Za-z_]\\w*)\")\n_NOT_RE = re.compile(r\"\\bNOT\\b\", re.IGNORECASE)\n# Brackets and the OR keyword, so a predicate can be walked with a depth count.\n_OR_SCAN_RE = re.compile(r\"[([{]|[)\\]}]|\\bOR\\b\", re.IGNORECASE)\n\n\ndef _blank(match: re.Match) -> str:\n \"\"\"Replace a quoted span with empty quotes and a comment with a space.\"\"\"\n text = match.group(0)\n return \" \" if text.startswith((\"/*\", \"//\")) else \"''\"\n\n\ndef _has_top_level_comma(pattern: str) -> bool:\n \"\"\"Whether the pattern holds a comma outside any bracket.\n\n That comma separates two independent patterns, and only one of them may\n be scoped. Quoted spans are already blanked, so no comma here is data.\n \"\"\"\n depth = 0\n for char in pattern:\n if char in \"([{\":\n depth += 1\n elif char in \")]}\":\n depth -= 1\n elif char == \",\" and depth == 0:\n return True\n return False\n\n\ndef _top_level_or_parts(predicate: str) -> list[str]:\n \"\"\"Split a predicate on the OR keywords that sit outside every bracket.\n\n AND binds tighter than OR, so the predicate holds whenever any one of\n these parts holds. A part without the session equality therefore admits\n rows on its own, whatever the parts beside it say: `n.session = $sess OR\n true` filters nothing at all. Each part has to carry the scope itself.\n \"\"\"\n parts, depth, start = [], 0, 0\n for match in _OR_SCAN_RE.finditer(predicate):\n token = match.group(0)\n if token in \"([{\":\n depth += 1\n elif token in \")]}\":\n depth -= 1\n elif depth == 0: # an OR joining two top-level parts\n parts.append(predicate[start : match.start()])\n start = match.end()\n parts.append(predicate[start:])\n return parts\n\n\ndef _node_patterns(pattern: str) -> list[str]:\n \"\"\"The inside of every node pattern in a MATCH, from `(` to its `)`.\n\n Relationship patterns use square brackets and are skipped: an edge alias\n produces no node, so it carries nothing that could be returned.\n \"\"\"\n insides, depth, start = [], 0, None\n for index, char in enumerate(pattern):\n if char == \"(\":\n if depth == 0:\n start = index + 1\n depth += 1\n elif char == \")\":\n depth -= 1\n if depth == 0 and start is not None:\n insides.append(pattern[start:index])\n start = None\n return insides\n\n\ndef _where_scoped_aliases(predicate: str, candidates: set[str]) -> set[str]:\n \"\"\"Which of `candidates` this WHERE actually constrains to the session.\n\n An alias counts only when every top-level OR part carries its equality,\n and only when the predicate holds no NOT: reading around a negation needs\n the AST this guard deliberately does not have, so it refuses instead.\n \"\"\"\n if _NOT_RE.search(predicate):\n return set()\n parts = _top_level_or_parts(predicate)\n scoped = set()\n for alias in candidates:\n equality = re.compile(\n rf\"\\b{re.escape(alias)}\\.session\\s*=\\s*\\$sess\\b\", re.IGNORECASE\n )\n if all(equality.search(part) for part in parts):\n scoped.add(alias)\n return scoped\n\n\ndef _body_is_scoped(pattern: str, predicate: str) -> bool:\n \"\"\"Whether one MATCH restricts every node it names to this session.\"\"\"\n # Two independent patterns, of which only one need be scoped.\n if _has_top_level_comma(pattern):\n return False\n\n named = []\n for inside in _node_patterns(pattern):\n alias = _NODE_ALIAS_RE.match(inside)\n if alias:\n named.append((alias.group(1), inside))\n # Nothing named means nothing this guard can vouch for.\n if not named:\n return False\n\n where_scoped = _where_scoped_aliases(predicate, {alias for alias, _ in named})\n return all(\n _SESSION_INLINE_RE.search(inside) or alias in where_scoped\n for alias, inside in named\n )\n\n\ndef _is_session_scoped(query: str) -> bool:\n \"\"\"Whether every match in the query restricts itself to this session.\"\"\"\n # Before any scanning: past the cap the masking pass turns quadratic, so\n # the guard refuses rather than spends. Every caller is bounded here, not\n # only the tool below.\n if len(query) > _MAX_QUERY_CHARS:\n return False\n\n bare = _MASKED_RE.sub(_blank, query)\n\n # A clause runs to whichever clause opens next. WHERE is not in that list,\n # so a MATCH clause carries its own WHERE and nothing else: a predicate\n # sitting in RETURN falls outside the MATCH it appears to qualify.\n bodies = []\n for match in _CLAUSE_RE.finditer(bare):\n keyword = re.sub(r\"\\s+\", \" \", match.group(1).upper())\n if keyword not in (\"MATCH\", \"OPTIONAL MATCH\"):\n continue\n nxt = _CLAUSE_RE.search(bare, match.end())\n bodies.append(bare[match.end() : nxt.start() if nxt else len(bare)])\n\n if not bodies:\n return False\n\n for body in bodies:\n where = _WHERE_RE.search(body)\n pattern, predicate = (\n (body[: where.start()], body[where.end() :]) if where else (body, \"\")\n )\n if not _body_is_scoped(pattern, predicate):\n return False\n return True\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n # Validate rel_type before interpolating into Cypher to prevent injection.\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s, session: $sess}}) \"\n f\"MERGE (b:Entity {{name: $o, session: $sess}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj, \"sess\": SESSION},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\n Every node a MATCH names must be scoped, with {session: $sess} in its own\n pattern or WHERE .session = $sess. Both ends of a hop count.\"\"\"\n q = cypher.strip()\n # Length first, so nothing below scans an unbounded string.\n if len(q) > _MAX_QUERY_CHARS:\n return (\n f\"Query is {len(q)} characters, over the {_MAX_QUERY_CHARS} this tool \"\n \"accepts. Ask for what you need in a smaller query.\"\n )\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n # Each MATCH must scope every node it names, in the pattern or its WHERE.\n if not _is_session_scoped(q):\n return (\n \"Every node a MATCH names must be scoped to the current session, \"\n \"with either {session: $sess} in its own pattern or WHERE \"\n \".session = $sess naming it. Both ends of a relationship \"\n \"count, because an edge may point at another session's node. \"\n \"Independent patterns in one MATCH (comma-separated) are refused: \"\n \"write them as separate scoped MATCH clauses. A WHERE carrying the \"\n \"scope may not use OR or NOT; put {session: $sess} in the pattern \"\n \"instead and the rest of the WHERE is free.\"\n )\n # Enforce a result cap so agents cannot dump the entire graph.\n # Cap explicit LIMIT to 20 (preserves smaller limits like LIMIT 1),\n # or append LIMIT 20 when no LIMIT clause is present.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n # Reject queries with parameters other than $sess — only {\"sess\": SESSION} is passed.\n extra_params = sorted({m.group(1) for m in re.finditer(r\"\\$([A-Za-z_]\\w*)\", q)} - {\"sess\"})\n if extra_params:\n return f\"Only $sess is supported in query_facts; found additional parameters: {', '.join(extra_params)}\"\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # Respect caller-provided non-terminal LIMIT clauses;\n # appending a second LIMIT would produce invalid Cypher.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n rows = client.cypher(q, params={\"sess\": SESSION})\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n # Every node on the path is checked, not just the endpoints. Nodes carry\n # their session from `save_fact`, so a path through a node belonging to\n # another session is refused rather than returned by way of its ends.\n rows = client.cypher(\n f\"MATCH p = (n:Entity {{name: $name, session: $sess}})-[*1..{safe_depth}]->(m:Entity) \"\n \"WHERE ALL(x IN nodes(p) WHERE x.session = $sess) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name, \"sess\": SESSION},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the current session's knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity {session: $sess})-[r]->(b:Entity {session: $sess}) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\",\n params={\"sess\": SESSION},\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(f\"Session: {SESSION}\")\nprint(\"Tools:\", [t.name for t in tools])" - }, - { - "cell_type": "markdown", - "id": "guard-581f55ed", - "metadata": {}, - "source": "### The guard, checked\n\n`query_facts` runs whatever Cypher the model writes, so the scope check is the\nonly thing keeping one session out of another's facts. The queries below are\nthe ones that fooled earlier versions of it, and each has to be refused now: a\npredicate placed in `RETURN` rather than `WHERE`, one hidden in a\nbacktick-quoted alias, one inside a string literal, one commented out in each\nof Cypher's two comment forms, one that ends its string early with an escaped\nquote, three where a single scoped pattern is used to vouch for an unscoped\none beside it, three where the scope is written into the `WHERE` but then\ndisjoined or negated away so that it narrows nothing, two where it names an\nalias belonging to an earlier clause, and two where only one end of a\nrelationship is scoped so the far end comes back unfiltered.\n\nAlongside them sit the queries that must keep working, including a bracketed\n`OR` that leaves the scope intact and a hop whose two ends are scoped by\ndifferent means. This runs on every execution, so a loosened rule fails here\nrather than in front of a user.\n" - }, - { - "cell_type": "code", - "id": "guard-6f7de8b1", - "metadata": {}, - "source": "import time\n\nscoped = [\n \"MATCH (n) WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.name = 'a' AND n.session = $sess RETURN n\",\n \"MATCH (n {session: $sess}) RETURN n\",\n \"MATCH (a {session: $sess})-[r]->(b {session: $sess}) RETURN a, b\",\n \"MATCH (n) WHERE n.session = $sess RETURN n ORDER BY n.name LIMIT 5\",\n # A comment must not swallow the predicate next to it.\n \"MATCH (n) // pick this session\\n WHERE n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess /* scoped */ RETURN n\",\n # '//' inside a string opens no comment, and an escaped quote does not\n # end the string early.\n \"MATCH (n) WHERE n.url = 'http://x' AND n.session = $sess RETURN n\",\n r\"MATCH (n) WHERE n.name = 'a\\'b' AND n.session = $sess RETURN n\",\n # A bracketed OR is one term of the AND, so the scope still holds for\n # every row: refusing this would cost the agent a retry for nothing.\n \"MATCH (n) WHERE n.session = $sess AND (n.a OR n.b) RETURN n\",\n # OR and NOT are free once the scope is in the pattern, where no\n # predicate can undo it.\n \"MATCH (n {session: $sess}) WHERE NOT n.archived OR n.pinned RETURN n\",\n # Both ends of the hop are named, and both are scoped: once in the\n # pattern, once through the WHERE.\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess AND b.session = $sess RETURN a, b\",\n \"MATCH (a {session: $sess})-[r]->(b) WHERE b.session = $sess RETURN b\",\n # An anonymous end binds no name, so nothing can return it.\n \"MATCH (a {session: $sess})-[:KNOWS]->() RETURN a\",\n]\nunscoped = [\n \"MATCH (n) RETURN n\",\n \"MATCH (n) WHERE n.session = $other RETURN n\",\n \"MATCH (n {sessionish: $sess}) RETURN n\",\n \"RETURN $sess\",\n # The predicate is in RETURN, not in the WHERE it appears to qualify.\n \"MATCH (n) WHERE true RETURN n, n.session = $sess AS scoped\",\n # Same clause boundary, reached through a map literal: RETURN is where\n # this {session: $sess} sits, so it names a value and filters nothing.\n \"MATCH (n) RETURN n, coalesce({session: $sess}, {}) AS marker\",\n # The whole predicate is an alias, so it is a name and not a filter.\n \"MATCH (n) RETURN n AS `WHERE n.session = $sess`\",\n # A string literal is data; it restricts nothing.\n \"WITH '.session = $sess' AS note MATCH (n) WHERE true RETURN n\",\n # The engine ignores both comment forms, so neither restricts anything.\n \"MATCH (n) WHERE true /* n.session = $sess */ RETURN n\",\n \"MATCH (n) WHERE true // n.session = $sess\\n RETURN n\",\n # The escape keeps the literal open, so the text after it is still data.\n r\"MATCH (n) WHERE n.note = 'harmless \\' .session = $sess' RETURN n\",\n # One scoped pattern does not vouch for the unscoped one beside it: each\n # of these returns every session's nodes through the unscoped alias.\n \"MATCH (n), (m {session: $sess}) RETURN n\",\n \"MATCH (m {session: $sess}) MATCH (n) RETURN n\",\n \"MATCH (m {session: $sess}) OPTIONAL MATCH (n) RETURN n\",\n # Present in the WHERE but not constraining it: the first is true for\n # every row, the second returns exactly the other sessions' rows, and\n # the third is (scope AND a) OR b, which b alone satisfies.\n \"MATCH (n) WHERE n.session = $sess OR true RETURN n\",\n \"MATCH (n) WHERE NOT n.session = $sess RETURN n\",\n \"MATCH (n) WHERE n.session = $sess AND n.a OR n.b RETURN n\",\n # The equality names an alias from an earlier clause, so it re-states a\n # scope that already holds and leaves n free to match every session.\n \"MATCH (m {session: $sess}) MATCH (n) WHERE m.session = $sess RETURN n\",\n \"MATCH (m) WHERE m.session = $sess MATCH (n) WHERE m.session = $sess RETURN n\",\n # Only one end of the hop is scoped. Nothing stops an edge from pointing\n # at another session's node, so the far end comes back unfiltered.\n \"MATCH (a {session: $sess})-[r]->(b) RETURN b\",\n \"MATCH (a)-[r]->(b) WHERE a.session = $sess RETURN b\",\n # Past the length cap, refused without being read.\n \"MATCH (n {session: $sess}) RETURN n // \" + \"x\" * _MAX_QUERY_CHARS,\n]\n\nwrong = [q for q in scoped if not _is_session_scoped(q)]\nwrong += [q for q in unscoped if _is_session_scoped(q)]\nif wrong:\n raise RuntimeError(\"scope guard misjudged:\\n \" + \"\\n \".join(wrong))\n\n# The cap is what keeps the masking pass from going quadratic on a query that\n# opens a quote and never closes it. Without it this shape took seconds; the\n# bound below is loose enough not to flake on a busy machine and tight enough\n# to fail loudly if the cap is ever removed.\nstarted = time.perf_counter()\n_is_session_scoped(\"MATCH (n) WHERE n.x = '\" + \"\\\\'\" * 20000)\nelapsed = time.perf_counter() - started\nif elapsed > 1.0:\n raise RuntimeError(f\"guard took {elapsed:.1f}s on adversarial input; is the length cap gone?\")\n\nprint(f\"guard agrees on all {len(scoped) + len(unscoped)} queries, and bounds its own work\")", - "execution_count": null, - "outputs": [] + "source": "import os, re\nfrom langchain_core.tools import tool\n\n# Relationship types are interpolated into Cypher rather than passed as a\n# parameter, because a type is part of the pattern and not a value. So the\n# name has to be validated before it goes in.\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n\n# query_facts runs Cypher the model writes. The database is private to this\n# run and is discarded when it closes, so a query cannot reach data that\n# belongs to anyone else; what remains is to keep this tool read-only and to\n# cap how much it returns.\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s}}) \"\n f\"MERGE (b:Entity {{name: $o}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\"\"\"\n q = cypher.strip()\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n\n # Cap the result set so one query cannot dump the whole graph into the\n # model's context. An explicit LIMIT is lowered to 20 and a smaller one is\n # left alone; a query with none gets one appended.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # A LIMIT that is not at the end belongs to a subclause; appending a\n # second one would not parse.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n\n rows = client.cypher(q)\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n rows = client.cypher(\n f\"MATCH (n:Entity {{name: $name}})-[*1..{safe_depth}]->(m:Entity) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity)-[r]->(b:Entity) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\"\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(\"Tools:\", [t.name for t in tools])" }, { "cell_type": "markdown", @@ -192,35 +66,7 @@ "id": "8", "metadata": {}, "outputs": [], - "source": [ - "ACME_CORP = \"Acme Corp\" # constant used in several save_fact calls below\n", - "\n", - "print(\"=== Saving facts ===\")\n", - "print(save_fact.invoke({\"subject\": \"Alice\", \"relation\": \"WORKS_AT\", \"obj\": ACME_CORP}))\n", - "print(save_fact.invoke({\"subject\": \"Alice\", \"relation\": \"MANAGES\", \"obj\": \"Bob\"}))\n", - "print(save_fact.invoke({\"subject\": \"Bob\", \"relation\": \"WORKS_AT\", \"obj\": ACME_CORP}))\n", - "print(save_fact.invoke({\"subject\": ACME_CORP, \"relation\": \"LOCATED_IN\", \"obj\": \"Berlin\"}))\n", - "print(save_fact.invoke({\"subject\": \"Alice\", \"relation\": \"KNOWS\", \"obj\": \"Charlie\"}))\n", - "print(save_fact.invoke({\"subject\": \"Charlie\", \"relation\": \"EXPERT_IN\", \"obj\": \"Machine Learning\"}))\n", - "\n", - "print(\"\\n=== All facts in session ===\")\n", - "print(list_all_facts.invoke({}))\n", - "\n", - "print(\"\\n=== Related to Alice (depth=1) ===\")\n", - "print(find_related.invoke({\"entity_name\": \"Alice\", \"depth\": 1}))\n", - "\n", - "print(\"\\n=== Related to Alice (depth=2) ===\")\n", - "print(find_related.invoke({\"entity_name\": \"Alice\", \"depth\": 2}))\n", - "\n", - "print(\"\\n=== Cypher query: who works at Acme Corp? ===\")\n", - "print(\n", - " query_facts.invoke(\n", - " {\n", - " \"cypher\": f'MATCH (p:Entity {{session: $sess}})-[:WORKS_AT]->(c:Entity {{name: \"{ACME_CORP}\", session: $sess}}) RETURN p.name AS employee'\n", - " }\n", - " )\n", - ")" - ] + "source": "ACME_CORP = \"Acme Corp\" # constant used in several save_fact calls below\n\nprint(\"=== Saving facts ===\")\nprint(save_fact.invoke({\"subject\": \"Alice\", \"relation\": \"WORKS_AT\", \"obj\": ACME_CORP}))\nprint(save_fact.invoke({\"subject\": \"Alice\", \"relation\": \"MANAGES\", \"obj\": \"Bob\"}))\nprint(save_fact.invoke({\"subject\": \"Bob\", \"relation\": \"WORKS_AT\", \"obj\": ACME_CORP}))\nprint(save_fact.invoke({\"subject\": ACME_CORP, \"relation\": \"LOCATED_IN\", \"obj\": \"Berlin\"}))\nprint(save_fact.invoke({\"subject\": \"Alice\", \"relation\": \"KNOWS\", \"obj\": \"Charlie\"}))\nprint(save_fact.invoke({\"subject\": \"Charlie\", \"relation\": \"EXPERT_IN\", \"obj\": \"Machine Learning\"}))\n\nprint(\"\\n=== All facts ===\")\nprint(list_all_facts.invoke({}))\n\nprint(\"\\n=== Related to Alice (depth=1) ===\")\nprint(find_related.invoke({\"entity_name\": \"Alice\", \"depth\": 1}))\n\nprint(\"\\n=== Related to Alice (depth=2) ===\")\nprint(find_related.invoke({\"entity_name\": \"Alice\", \"depth\": 2}))\n\nprint(\"\\n=== Cypher query: who works at Acme Corp? ===\")\nprint(\n query_facts.invoke(\n {\n \"cypher\": f'MATCH (p:Entity)-[:WORKS_AT]->(c:Entity {{name: \"{ACME_CORP}\"}}) RETURN p.name AS employee'\n }\n )\n)" }, { "cell_type": "markdown", @@ -338,11 +184,7 @@ "id": "14", "metadata": {}, "outputs": [], - "source": [ - "client.cypher(\"MATCH (n:Entity {session: $sess}) DETACH DELETE n\", params={\"sess\": SESSION})\n", - "print(\"Cleaned up session:\", SESSION)\n", - "client.close()" - ] + "source": "# The database lives in memory and is discarded here, so there is nothing to\n# delete first: closing the client is the cleanup.\nclient.close()\nprint(\"Closed. The in-process database went with it.\")" } ], "metadata": { From bbce88772fb1214281148ec288cf5de237a62d2e Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 16:40:16 +0300 Subject: [PATCH 48/56] fix(client): reject at_timestamp=0 instead of silently unpinning the read at_timestamp is a plain proto3 scalar with no field presence, so zero is not serialised and the server reads the field as absent. A caller asking to read as of the epoch therefore got a current read: the request was accepted, the pin was dropped on the wire, and live data came back for a time-travel query. The same package already asserts that half of it, in test_absent_by_default, which pins an unpinned request to timestamp zero. Validation now requires a positive integer and says why, and the public docstring records that zero is how the wire says "no pin" and so cannot also ask for one. Carries a regression test for the zero case; it fails against the previous validation, which accepted anything non-negative. --- coordinode/coordinode/client.py | 13 ++++++++++--- tests/unit/test_consistency_helpers.py | 15 ++++++++++++++- 2 files changed, 24 insertions(+), 4 deletions(-) diff --git a/coordinode/coordinode/client.py b/coordinode/coordinode/client.py index 56ad625..f462635 100644 --- a/coordinode/coordinode/client.py +++ b/coordinode/coordinode/client.py @@ -296,7 +296,8 @@ async def cypher( The timestamp has to fall inside the MVCC retention window; older snapshots are collected and the server answers UNAVAILABLE. It cannot be combined with a non-zero ``after_index``: waiting for a new write and reading a fixed past are - opposite requests, and the pair is rejected. + opposite requests, and the pair is rejected. Zero is rejected too: it is how the + wire says "no pin", so it cannot also ask for one. """ from coordinode._proto.coordinode.v1.query.cypher_pb2 import ( # type: ignore[import] ExecuteCypherRequest, @@ -1116,8 +1117,14 @@ def _make_read_concern(level: str | None, after_index: int | None, at_timestamp: raise ValueError(f"after_index must be a non-negative integer, got {after_index!r}") kwargs["after_index"] = after_index if at_timestamp is not None: - if not isinstance(at_timestamp, int) or isinstance(at_timestamp, bool) or at_timestamp < 0: - raise ValueError(f"at_timestamp must be a non-negative integer, got {at_timestamp!r}") + # Positive, not merely non-negative: the field is a plain proto3 scalar + # with no presence, so zero is not put on the wire and the server reads + # it as "no pin". A request to read as of the epoch would come back as + # a current read, which is the one answer time travel must not give. + if not isinstance(at_timestamp, int) or isinstance(at_timestamp, bool) or at_timestamp < 1: + raise ValueError( + f"at_timestamp must be a positive integer (microseconds since the epoch), got {at_timestamp!r}" + ) # A fence waits for the log to reach an index; a pin reads a fixed # point in the past. The server calls the pair mutually exclusive and # answers INVALID_ARGUMENT, so say so here rather than a round trip diff --git a/tests/unit/test_consistency_helpers.py b/tests/unit/test_consistency_helpers.py index b30f935..f729199 100644 --- a/tests/unit/test_consistency_helpers.py +++ b/tests/unit/test_consistency_helpers.py @@ -76,9 +76,22 @@ def test_allows_a_zero_fence_with_a_pin(self) -> None: @pytest.mark.parametrize("bad", [-1, True, "42", 1.5]) def test_rejects_non_negative_integers(self, bad: object) -> None: - with pytest.raises(ValueError, match="at_timestamp must be a non-negative integer"): + with pytest.raises(ValueError, match="at_timestamp must be a positive integer"): _make_read_concern(None, None, bad) # type: ignore[arg-type] + def test_rejects_zero_because_the_wire_cannot_carry_it(self) -> None: + """Zero is how the wire says "no pin", so it cannot also mean a pin. + + `at_timestamp` is a plain proto3 scalar with no field presence, so + zero is not serialised and the server reads the field as absent. A + caller asking to read as of the epoch would silently get a current + read instead, which is the one answer a time-travel query must never + return. `test_absent_by_default` pins the other half of this: an + unpinned request is exactly the one whose timestamp is zero. + """ + with pytest.raises(ValueError, match="at_timestamp must be a positive integer"): + _make_read_concern(None, None, 0) + def test_defaults_the_level_to_snapshot(self) -> None: """A pinned read is a snapshot read, and the server enforces that. From 52b430546fa427360862cad13389274f99b268a0 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 16:56:31 +0300 Subject: [PATCH 49/56] perf(embedded): stop paying per value in the conversion layer value_to_py runs for every column of every row, so anything it does per call is multiplied by the size of the result set. Three costs there were avoidable: The tag lookup went through the import machinery and an attribute fetch on every converted value, to reach a class that never changes. It is now resolved once per process. Measured at 372 ns per value: 0.11 ms on a 300-row result, 37 ms on 100k. A failed lookup is cached too, since a package that is not importable at the first conversion will not become importable later in the same process. A path hop cloned its type string although the arm owns the path and drops it on the way out. Consuming it moves the string instead of duplicating it once per hop. Vectors, a path's node list and each multi-vector row grew by append with their length already known. Sizing the list once measures 79.52 -> 78.94 ms best and 81.14 -> 79.91 ms median on 200 rows of 768 floats, which is about a percent and near the noise on that sample, but it points the same way in both statistics and replaces a loop with one line. An embedding is the one value here that routinely runs to thousands of elements. Value::Array keeps its append loop on purpose: its items need a fallible recursive conversion, so sizing it once would mean collecting into an intermediate Vec and trading a growth reallocation for a whole allocation. --- coordinode-embedded/src/lib.rs | 69 ++++++++++++++++++++++------------ 1 file changed, 44 insertions(+), 25 deletions(-) diff --git a/coordinode-embedded/src/lib.rs b/coordinode-embedded/src/lib.rs index 179b215..440a31f 100644 --- a/coordinode-embedded/src/lib.rs +++ b/coordinode-embedded/src/lib.rs @@ -21,6 +21,7 @@ use coordinode_core::graph::types::{GeoValue, PathRel, PathValue, Value}; use coordinode_embed::{Database, DatabaseError}; use pyo3::exceptions::{PyRuntimeError, PyValueError}; use pyo3::prelude::*; +use pyo3::sync::GILOnceCell; use pyo3::types::{PyBytes, PyDict, PyList}; use rmpv::Value as MsgpackValue; @@ -34,10 +35,23 @@ use rmpv::Value as MsgpackValue; /// property's type. That module re-exports `coordinode`'s definition when that /// package is installed and defines an equivalent when it is not, so the tag /// holds for a standalone install of the embedded engine too. +/// Looked up once per process rather than per value: `value_to_py` runs for +/// every column of every row, and the import machinery plus the attribute +/// fetch are the same two lookups every time. A failed lookup is cached too, +/// since a package that is not importable at the first conversion will not +/// become importable later in the same process. +static MULTI_VECTOR_TYPE: GILOnceCell>> = GILOnceCell::new(); + fn multi_vector_type(py: Python<'_>) -> Option> { - py.import("coordinode_embedded._types") - .and_then(|m| m.getattr("MultiVector")) - .ok() + MULTI_VECTOR_TYPE + .get_or_init(py, || { + py.import("coordinode_embedded._types") + .and_then(|m| m.getattr("MultiVector")) + .map(Bound::unbind) + .ok() + }) + .as_ref() + .map(|tag| tag.bind(py).clone()) } /// The `Path` tag, from this package's own `_types` module. @@ -45,10 +59,19 @@ fn multi_vector_type(py: Python<'_>) -> Option> { /// A dict subclass, for the same reason as [`multi_vector_type`]: without the /// tag a path read back is an ordinary mapping, and writing it out again would /// store a map. +/// Cached for the same reason as [`MULTI_VECTOR_TYPE`]. +static PATH_TYPE: GILOnceCell>> = GILOnceCell::new(); + fn path_type(py: Python<'_>) -> Option> { - py.import("coordinode_embedded._types") - .and_then(|m| m.getattr("Path")) - .ok() + PATH_TYPE + .get_or_init(py, || { + py.import("coordinode_embedded._types") + .and_then(|m| m.getattr("Path")) + .map(Bound::unbind) + .ok() + }) + .as_ref() + .map(|tag| tag.bind(py).clone()) } fn value_to_py(py: Python<'_>, v: Value) -> PyResult { @@ -62,13 +85,11 @@ fn value_to_py(py: Python<'_>, v: Value) -> PyResult { Value::String(s) => Ok(s.into_pyobject(py)?.into_any().unbind()), // Timestamp: expose as raw microseconds; callers use datetime.fromtimestamp(ts/1e6) Value::Timestamp(ts) => Ok(ts.into_pyobject(py)?.into_any().unbind()), - Value::Vector(v) => { - let list = PyList::empty(py); - for x in v { - list.append(x)?; - } - Ok(list.into_any().unbind()) - } + // Sized from the vector's length in one go. Growing by append costs a + // reallocation every time the list outgrows its capacity, and an + // embedding is the one value here that routinely runs to hundreds or + // thousands of elements. + Value::Vector(v) => Ok(PyList::new(py, v)?.into_any().unbind()), Value::Array(arr) => { let list = PyList::empty(py); for item in arr { @@ -103,11 +124,8 @@ fn value_to_py(py: Python<'_>, v: Value) -> PyResult { Value::MultiVector(rows) => { let outer = PyList::empty(py); for row in rows { - let inner = PyList::empty(py); - for x in row { - inner.append(x)?; - } - outer.append(inner)?; + // Each row's width is known, so the list is sized once. + outer.append(PyList::new(py, row)?)?; } match multi_vector_type(py) { Some(cls) => Ok(cls.call1((outer,))?.unbind()), @@ -118,16 +136,17 @@ fn value_to_py(py: Python<'_>, v: Value) -> PyResult { // it runs through and the relationship hops between them. Value::Path(path) => { let d = PyDict::new(py); - let nodes = PyList::empty(py); - for n in &path.nodes { - nodes.append(*n)?; - } - d.set_item("nodes", nodes)?; + // Sized from the length that is already known, rather than grown + // by repeated append. + d.set_item("nodes", PyList::new(py, path.nodes)?)?; let rels = PyList::empty(py); - for rel in &path.rels { + for rel in path.rels { let r = PyDict::new(py); - r.set_item("type", rel.edge_type.clone())?; + // The path is owned here and dropped on the way out, so the + // type moves into the Python string instead of being copied + // once per hop for it. + r.set_item("type", rel.edge_type)?; r.set_item("source", rel.source)?; r.set_item("target", rel.target)?; rels.append(r)?; From 9cc1f93e25dc6158c92054d9beadd613e1664bb0 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 17:01:13 +0300 Subject: [PATCH 50/56] fix(demo): bound query_facts again after the guard came out Removing the session guard took the length cap with it, and query_facts still scans model-written text before running it. One of the regexes left behind is quadratic on a query that ends in whitespace without matching: `\bLIMIT\s+(\d+)\s*;?\s*$` lets the two whitespace runs split the same characters many ways, so a failure backtracks through all of them. It measures 29 ms on a 2 KB tail, 217 ms at 8 KB and 2.6 s at 32 KB. Tying the whitespace to the semicolon leaves one way to match at each position, which takes the same 32 KB from 2.6 s to 0.4 ms and returns the same verdict on every real query, including the semicolon and trailing space forms. The cap comes back as well, because the fix above is specific to one pattern while the input is arbitrary: 2000 characters against a longest real query of 67. With it, the shapes above are refused before any scan. The pattern also moves up beside the other two rather than being rebuilt inside the function on every call. --- demo/notebooks/03_langgraph_agent.ipynb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 3ad644c..40eeafe 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -48,7 +48,7 @@ "id": "6", "metadata": {}, "outputs": [], - "source": "import os, re\nfrom langchain_core.tools import tool\n\n# Relationship types are interpolated into Cypher rather than passed as a\n# parameter, because a type is part of the pattern and not a value. So the\n# name has to be validated before it goes in.\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n\n# query_facts runs Cypher the model writes. The database is private to this\n# run and is discarded when it closes, so a query cannot reach data that\n# belongs to anyone else; what remains is to keep this tool read-only and to\n# cap how much it returns.\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s}}) \"\n f\"MERGE (b:Entity {{name: $o}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\"\"\"\n q = cypher.strip()\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n\n # Cap the result set so one query cannot dump the whole graph into the\n # model's context. An explicit LIMIT is lowered to 20 and a smaller one is\n # left alone; a query with none gets one appended.\n _LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)\\s*;?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n def _cap_limit(m):\n return f\"LIMIT {min(int(m.group(1)), 20)}\"\n\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # A LIMIT that is not at the end belongs to a subclause; appending a\n # second one would not parse.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n\n rows = client.cypher(q)\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n rows = client.cypher(\n f\"MATCH (n:Entity {{name: $name}})-[*1..{safe_depth}]->(m:Entity) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity)-[r]->(b:Entity) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\"\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(\"Tools:\", [t.name for t in tools])" + "source": "import os, re\nfrom langchain_core.tools import tool\n\n# Relationship types are interpolated into Cypher rather than passed as a\n# parameter, because a type is part of the pattern and not a value. So the\n# name has to be validated before it goes in.\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n\n# query_facts runs Cypher the model writes. The database is private to this\n# run and is discarded when it closes, so a query cannot reach data that\n# belongs to anyone else; what remains is to keep this tool read-only, to cap\n# how much it returns, and to keep it from spending unbounded time on the text.\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n\n# A trailing LIMIT, so an existing one can be lowered rather than duplicated.\n# The optional semicolon carries its own leading whitespace: written as\n# `\\s*;?\\s*`, the two runs could split the same whitespace many ways, and a\n# query that ends in whitespace but does not match would backtrack through all\n# of them. That shape measured 2.6 s on a 32 KB tail; this one measures 0.4 ms.\n_LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)(?:\\s*;)?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n# The model writes these queries, so their length is not ours to assume. A cap\n# keeps any scan over the text bounded regardless of what arrives; the longest\n# query this demo sends is 67 characters.\n_MAX_QUERY_CHARS = 2000\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s}}) \"\n f\"MERGE (b:Entity {{name: $o}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\ndef _cap_limit(match: re.Match) -> str:\n \"\"\"Lower an existing LIMIT to 20, leaving a smaller one alone.\"\"\"\n return f\"LIMIT {min(int(match.group(1)), 20)}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\"\"\"\n q = cypher.strip()\n # Length first, so nothing below scans an unbounded string.\n if len(q) > _MAX_QUERY_CHARS:\n return (\n f\"Query is {len(q)} characters, over the {_MAX_QUERY_CHARS} this tool \"\n \"accepts. Ask for what you need in a smaller query.\"\n )\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n\n # Cap the result set so one query cannot dump the whole graph into the\n # model's context.\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # A LIMIT that is not at the end belongs to a subclause; appending a\n # second one would not parse.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n\n rows = client.cypher(q)\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n rows = client.cypher(\n f\"MATCH (n:Entity {{name: $name}})-[*1..{safe_depth}]->(m:Entity) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity)-[r]->(b:Entity) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\"\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(\"Tools:\", [t.name for t in tools])" }, { "cell_type": "markdown", From bdc52c31d5a11e04f6a4ff544918718c55a2fc16 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 17:01:13 +0300 Subject: [PATCH 51/56] refactor(types): move the path encoding out of the value dispatch Adding the path branch pushed to_property_value past the complexity threshold the analyser allows, which is a fair reading: the function dispatches over every value type, and one of those branches had grown a body of its own. The encoding moves to a helper next to the type it encodes. The dispatch goes back to one line per branch, and the next value type will not have to widen it either. --- coordinode/coordinode/_types.py | 48 +++++++++++++++++++-------------- 1 file changed, 28 insertions(+), 20 deletions(-) diff --git a/coordinode/coordinode/_types.py b/coordinode/coordinode/_types.py index 506e993..6f31bac 100644 --- a/coordinode/coordinode/_types.py +++ b/coordinode/coordinode/_types.py @@ -38,6 +38,33 @@ class Path(dict): __slots__ = () +def _to_path_proto(path: Path) -> Any: + """Build the wire Path from the mapping a decoded path presents. + + Kept out of :func:`to_property_value` so that adding a value type does not + grow the branch it sits in: the encoding of one type belongs with that type, + not inside the dispatch over all of them. + """ + from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] + Path as PathProto, + ) + from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] + PathRel as PathRelProto, + ) + + return PathProto( + nodes=[int(n) for n in path.get("nodes", [])], + rels=[ + PathRelProto( + edge_type=str(rel["type"]), + source=int(rel["source"]), + target=int(rel["target"]), + ) + for rel in path.get("rels", []) + ], + ) + + def to_property_value(py_val: PyValue) -> Any: """Convert a Python value to a proto PropertyValue.""" from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] @@ -84,26 +111,7 @@ def to_property_value(py_val: PyValue) -> Any: # Before the dict branch below, which would otherwise take it: Path is # a dict, and encoding it as a map changes the property's wire type on # a read-modify-write. - from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] - Path as PathProto, - ) - from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] - PathRel as PathRelProto, - ) - - pv.path_value.CopyFrom( - PathProto( - nodes=[int(n) for n in py_val.get("nodes", [])], - rels=[ - PathRelProto( - edge_type=str(rel["type"]), - source=int(rel["source"]), - target=int(rel["target"]), - ) - for rel in py_val.get("rels", []) - ], - ) - ) + pv.path_value.CopyFrom(_to_path_proto(py_val)) elif isinstance(py_val, dict): pm = PropertyMap(entries={k: to_property_value(v) for k, v in py_val.items()}) pv.map_value.CopyFrom(pm) From 3f0c65d2df4d459b5134e52ae142897113e8fd3c Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 17:04:53 +0300 Subject: [PATCH 52/56] refactor(types): move the sequence encoding out of the value dispatch too Moving the path branch out was not enough: the analyser still measured to_property_value at 16 against its limit of 15, and measuring locally agreed. The weight was in the sequence branch, which carried a nested if/else and two boolean operators to decide between a vector and a list. That decision moves next to the others, and the dispatch is one line per branch throughout. Measured with the same algorithm the analyser uses: 16 to 12. Behaviour is pinned by the existing tests and re-checked across every shape the branch decides on: floats, ints, a mix of the two, empty, booleans, strings, mixed, a tuple, and nested lists all encode to the same field as before. --- coordinode/coordinode/_types.py | 29 +++++++++++++++++++---------- 1 file changed, 19 insertions(+), 10 deletions(-) diff --git a/coordinode/coordinode/_types.py b/coordinode/coordinode/_types.py index 6f31bac..703de12 100644 --- a/coordinode/coordinode/_types.py +++ b/coordinode/coordinode/_types.py @@ -65,10 +65,27 @@ def _to_path_proto(path: Path) -> Any: ) +def _set_sequence(pv: Any, values: Any) -> None: + """Encode a Python sequence into the field that matches what it holds. + + A non-empty run of plain numbers is a Vector; anything else is a list of + values. bool is a subclass of int, so it is excluded explicitly: [True, + False] is a list of booleans, not a Vector of 1.0 and 0.0. + """ + from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] + PropertyList, + Vector, + ) + + if values and all(isinstance(v, int | float) and not isinstance(v, bool) for v in values): + pv.vector_value.CopyFrom(Vector(values=[float(v) for v in values])) + else: + pv.list_value.CopyFrom(PropertyList(values=[to_property_value(v) for v in values])) + + def to_property_value(py_val: PyValue) -> Any: """Convert a Python value to a proto PropertyValue.""" from coordinode._proto.coordinode.v1.common.types_pb2 import ( # type: ignore[import] - PropertyList, PropertyMap, PropertyValue, Vector, @@ -96,17 +113,9 @@ def to_property_value(py_val: PyValue) -> Any: MultiVectorProto(rows=[Vector(values=[float(v) for v in row]) for row in py_val]) ) elif isinstance(py_val, list | tuple): - # Homogeneous float list → Vector; mixed/str list → PropertyList. - # bool is a subclass of int, so exclude it explicitly — [True, False] must - # not be serialised as a Vector of 1.0/0.0 but as a PropertyList. # list | tuple union syntax is valid in isinstance() for Python ≥3.10 (PEP 604). # This project targets Python ≥3.11 (pyproject.toml: requires-python = ">=3.11"). - if py_val and all(isinstance(v, int | float) and not isinstance(v, bool) for v in py_val): - vec = Vector(values=[float(v) for v in py_val]) - pv.vector_value.CopyFrom(vec) - else: - pl = PropertyList(values=[to_property_value(v) for v in py_val]) - pv.list_value.CopyFrom(pl) + _set_sequence(pv, py_val) elif isinstance(py_val, Path): # Before the dict branch below, which would otherwise take it: Path is # a dict, and encoding it as a map changes the property's wire type on From b3684a624e4ff7d409011bb22976cdacdbb1c209 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 17:23:43 +0300 Subject: [PATCH 53/56] fix(embedded): remember the tag lookup only when it succeeds The lookup cached its result either way, so one failure would have decided the wire type of every value for the rest of the process: without the tag, a multi-vector converts to a plain list and a path to a plain dict, and writing either back re-encodes it as an array or a map. The error was discarded rather than examined, so calling it permanent was not ours to do. The cell now holds successes only. A failure is retried on the next value, which costs the two lookups again on a path that runs only when the module is missing, and it ships in this package. --- coordinode-embedded/src/lib.rs | 60 ++++++++++++++++++++-------------- 1 file changed, 35 insertions(+), 25 deletions(-) diff --git a/coordinode-embedded/src/lib.rs b/coordinode-embedded/src/lib.rs index 440a31f..fce8f63 100644 --- a/coordinode-embedded/src/lib.rs +++ b/coordinode-embedded/src/lib.rs @@ -35,23 +35,20 @@ use rmpv::Value as MsgpackValue; /// property's type. That module re-exports `coordinode`'s definition when that /// package is installed and defines an equivalent when it is not, so the tag /// holds for a standalone install of the embedded engine too. -/// Looked up once per process rather than per value: `value_to_py` runs for +/// Resolved once per process rather than per value: `value_to_py` runs for /// every column of every row, and the import machinery plus the attribute -/// fetch are the same two lookups every time. A failed lookup is cached too, -/// since a package that is not importable at the first conversion will not -/// become importable later in the same process. -static MULTI_VECTOR_TYPE: GILOnceCell>> = GILOnceCell::new(); +/// fetch are the same two lookups every time. +/// +/// Only a success is remembered. Caching a failure would let one bad lookup +/// decide the wire type of every value for the rest of the process, and the +/// error is discarded here rather than inspected, so it is not ours to call +/// permanent. Retrying costs the two lookups again on a path that only runs +/// when the module is missing, which cannot happen while it ships in this +/// package. +static MULTI_VECTOR_TYPE: GILOnceCell> = GILOnceCell::new(); fn multi_vector_type(py: Python<'_>) -> Option> { - MULTI_VECTOR_TYPE - .get_or_init(py, || { - py.import("coordinode_embedded._types") - .and_then(|m| m.getattr("MultiVector")) - .map(Bound::unbind) - .ok() - }) - .as_ref() - .map(|tag| tag.bind(py).clone()) + tag_type(py, &MULTI_VECTOR_TYPE, "MultiVector") } /// The `Path` tag, from this package's own `_types` module. @@ -59,19 +56,32 @@ fn multi_vector_type(py: Python<'_>) -> Option> { /// A dict subclass, for the same reason as [`multi_vector_type`]: without the /// tag a path read back is an ordinary mapping, and writing it out again would /// store a map. -/// Cached for the same reason as [`MULTI_VECTOR_TYPE`]. -static PATH_TYPE: GILOnceCell>> = GILOnceCell::new(); +/// Resolved and remembered on the same terms as [`MULTI_VECTOR_TYPE`]. +static PATH_TYPE: GILOnceCell> = GILOnceCell::new(); fn path_type(py: Python<'_>) -> Option> { - PATH_TYPE - .get_or_init(py, || { - py.import("coordinode_embedded._types") - .and_then(|m| m.getattr("Path")) - .map(Bound::unbind) - .ok() - }) - .as_ref() - .map(|tag| tag.bind(py).clone()) + tag_type(py, &PATH_TYPE, "Path") +} + +/// Fetch a tag class from this package's `_types`, remembering it in `cell`. +/// +/// The cell holds successes only, so a lookup that fails is retried on the +/// next value rather than deciding the wire type for the rest of the process. +fn tag_type<'py>( + py: Python<'py>, + cell: &GILOnceCell>, + name: &str, +) -> Option> { + if let Some(tag) = cell.get(py) { + return Some(tag.bind(py).clone()); + } + let tag = py + .import("coordinode_embedded._types") + .and_then(|module| module.getattr(name)) + .ok()?; + // A racing thread may have set it first; either value is the same class. + let _ = cell.set(py, tag.clone().unbind()); + Some(tag) } fn value_to_py(py: Python<'_>, v: Value) -> PyResult { From 398384a3f5f1fe1eed09ec9e5c573faf9886fdf2 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 17:23:43 +0300 Subject: [PATCH 54/56] fix(demo): cap the rows, not the query text query_facts recognised an existing LIMIT so it could lower it and appended one when it found none. Both steps keyed off `\bLIMIT\b`, which matches the keyword inside a string literal just as happily: `RETURN n, 'LIMIT' AS note` took the branch that assumes a limit is already there, and the tool handed back every matching row. With 60 nodes in the graph that query returned 60. Counting rows after the query cannot be fooled by quoting and needs no Cypher parsing at all, which is the third time in this PR that parsing Cypher with a regex has produced a defect. The database holds this run's own handful of facts, so asking the engine for the whole match and trimming here costs nothing. Verified on all three shapes, each now capped at 20. Also: the notebook checks at startup that the engine can parse a variable-length path, since `find_related` uses one and the wheel currently on PyPI cannot. That check reports what to do instead of failing four cells later inside a tool call, and the notebook and README no longer promise Colab works with no setup while that wheel is what Colab installs. --- demo/README.md | 2 +- demo/notebooks/03_langgraph_agent.ipynb | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/demo/README.md b/demo/README.md index 8b90538..db6692d 100644 --- a/demo/README.md +++ b/demo/README.md @@ -9,7 +9,7 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/00_seed_data.ipynb) **Seed Data** | Build a tech-industry knowledge graph (~35 relationships) | nothing | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/01_llama_index_property_graph.ipynb) **LlamaIndex** | `CoordinodePropertyGraphStore`: upsert, triplets, structured query | nothing | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/02_langchain_graph_chain.ipynb) **LangChain** | `CoordinodeGraph`: add_graph_documents, schema, GraphCypherQAChain | nothing | -| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb) **LangGraph** | Agent with CoordiNode as graph memory (save/query/traverse) | nothing | +| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb) **LangGraph** | Agent with CoordiNode as graph memory (save/query/traverse) | a current `coordinode-embedded` | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/04_whats_new_in_0_5.ipynb) **What 0.5 Added** | Batch insert, `element_id`, schema revision, write/read concerns, time travel | a server (`COORDINODE_ADDR`) | > **Note:** **LangGraph** runs the engine in-process rather than against a diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 40eeafe..a5b8068 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -4,7 +4,7 @@ "cell_type": "markdown", "id": "0", "metadata": {}, - "source": "# LangGraph + CoordiNode: Agent with graph memory\n\n[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb)\n\nDemonstrates a LangGraph agent that uses CoordiNode as persistent **graph memory**:\n- `save_fact`: store a subject → relation → object triple in the graph\n- `query_facts`: run an arbitrary read-only Cypher query against the graph\n- `find_related`: traverse the graph from a given entity\n- `list_all_facts`: dump every fact in the graph\n\n**Works without OpenAI.** The mock demo section calls the tools directly. \nSet `OPENAI_API_KEY` to run the full `gpt-4o-mini` ReAct agent.\n\n**Runs in-process.** The engine is embedded here (`coordinode-embedded`), in a\ndatabase that exists only for this run. That is deliberate: `query_facts`\nexecutes Cypher the model writes, and a private database is what makes an\ninvented query harmless. It needs no server, which is also why the notebook\nopens in Colab with nothing to set up. For the client/server API, see notebooks\n00 to 02 and **What 0.5 Added**.\n" + "source": "# LangGraph + CoordiNode: Agent with graph memory\n\n[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb)\n\nDemonstrates a LangGraph agent that uses CoordiNode as persistent **graph memory**:\n- `save_fact`: store a subject → relation → object triple in the graph\n- `query_facts`: run an arbitrary read-only Cypher query against the graph\n- `find_related`: traverse the graph from a given entity\n- `list_all_facts`: dump every fact in the graph\n\n**Works without OpenAI.** The mock demo section calls the tools directly. \nSet `OPENAI_API_KEY` to run the full `gpt-4o-mini` ReAct agent.\n\n**Runs in-process.** The engine is embedded here (`coordinode-embedded`), in a\ndatabase that exists only for this run. That is deliberate: `query_facts`\nexecutes Cypher the model writes, and a private database is what makes an\ninvented query harmless. No server is involved. For the client/server API, see\nnotebooks 00 to 02 and **What 0.5 Added**.\n\n> **Needs a current `coordinode-embedded`.** The wheel on PyPI predates the\n> variable-length path syntax `find_related` uses, so until a release publishes\n> a matching one, build it from this checkout with\n> `maturin build --manifest-path coordinode-embedded/Cargo.toml` and install the\n> wheel it prints. The notebook checks for that syntax when it opens the\n> database and says so rather than failing later inside a tool call.\n" }, { "cell_type": "markdown", @@ -34,7 +34,7 @@ "id": "4", "metadata": {}, "outputs": [], - "source": "import os\n\n# This notebook runs the engine in-process, in a database of its own that\n# lives only as long as the run. That is the isolation: an agent writes the\n# Cypher here, and a private database is the only way to be sure a query it\n# invents cannot reach anyone else's data. Filtering by a session tag was the\n# alternative, and a text check over model-written Cypher leaks the moment it\n# misses a case.\n#\n# COORDINODE_ADDR is deliberately ignored. A shared server would put this\n# demo's writes next to everyone else's, which is what the private database\n# exists to avoid. The server API is what notebooks 00 to 02 and 04 exercise.\ntry:\n from coordinode_embedded import LocalClient\nexcept ImportError as exc:\n raise RuntimeError(\n \"coordinode-embedded is not installed, and this notebook runs on it.\\n\"\n \" pip install coordinode-embedded\\n\"\n \"In Colab, rerun the install cell above. To build it from this \"\n \"checkout instead: maturin build --manifest-path coordinode-embedded/\"\n \"Cargo.toml, then install the wheel it prints.\"\n ) from exc\n\nclient = LocalClient(\":memory:\")\nprint(\"Using an in-process database, private to this run\")" + "source": "import os\n\n# This notebook runs the engine in-process, in a database of its own that\n# lives only as long as the run. That is the isolation: an agent writes the\n# Cypher here, and a private database is the only way to be sure a query it\n# invents cannot reach anyone else's data. Filtering by a session tag was the\n# alternative, and a text check over model-written Cypher leaks the moment it\n# misses a case.\n#\n# COORDINODE_ADDR is deliberately ignored. A shared server would put this\n# demo's writes next to everyone else's, which is what the private database\n# exists to avoid. The server API is what notebooks 00 to 02 and 04 exercise.\ntry:\n from coordinode_embedded import LocalClient\nexcept ImportError as exc:\n raise RuntimeError(\n \"coordinode-embedded is not installed, and this notebook runs on it.\\n\"\n \" pip install coordinode-embedded\\n\"\n \"In Colab, rerun the install cell above. To build it from this \"\n \"checkout instead: maturin build --manifest-path coordinode-embedded/\"\n \"Cargo.toml, then install the wheel it prints.\"\n ) from exc\n\nclient = LocalClient(\":memory:\")\n\n# `find_related` traverses with a variable-length path, and an older engine\n# cannot parse one. Ask now rather than let the tool fail mid-conversation\n# with a parse error that reads like the agent's fault. The published wheel is\n# older than this syntax until a release catches up, so this is the check that\n# tells a Colab reader what to do about it.\ntry:\n client.cypher(\"MATCH (n)-[*1..2]->(m) RETURN n LIMIT 1\")\nexcept Exception as exc:\n client.close()\n raise RuntimeError(\n \"The installed coordinode-embedded cannot parse a variable-length \"\n \"path, which `find_related` uses, so it predates this notebook.\\n\"\n \"Build the current one from this checkout:\\n\"\n \" maturin build --manifest-path coordinode-embedded/Cargo.toml\\n\"\n \"then install the wheel it prints. The release that publishes a \"\n \"matching wheel to PyPI is still pending.\"\n ) from exc\n\nprint(\"Using an in-process database, private to this run\")" }, { "cell_type": "markdown", @@ -48,7 +48,7 @@ "id": "6", "metadata": {}, "outputs": [], - "source": "import os, re\nfrom langchain_core.tools import tool\n\n# Relationship types are interpolated into Cypher rather than passed as a\n# parameter, because a type is part of the pattern and not a value. So the\n# name has to be validated before it goes in.\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n\n# query_facts runs Cypher the model writes. The database is private to this\n# run and is discarded when it closes, so a query cannot reach data that\n# belongs to anyone else; what remains is to keep this tool read-only, to cap\n# how much it returns, and to keep it from spending unbounded time on the text.\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n\n# A trailing LIMIT, so an existing one can be lowered rather than duplicated.\n# The optional semicolon carries its own leading whitespace: written as\n# `\\s*;?\\s*`, the two runs could split the same whitespace many ways, and a\n# query that ends in whitespace but does not match would backtrack through all\n# of them. That shape measured 2.6 s on a 32 KB tail; this one measures 0.4 ms.\n_LIMIT_AT_END_RE = re.compile(r\"\\bLIMIT\\s+(\\d+)(?:\\s*;)?\\s*$\", re.IGNORECASE | re.DOTALL)\n\n# The model writes these queries, so their length is not ours to assume. A cap\n# keeps any scan over the text bounded regardless of what arrives; the longest\n# query this demo sends is 67 characters.\n_MAX_QUERY_CHARS = 2000\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s}}) \"\n f\"MERGE (b:Entity {{name: $o}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\ndef _cap_limit(match: re.Match) -> str:\n \"\"\"Lower an existing LIMIT to 20, leaving a smaller one alone.\"\"\"\n return f\"LIMIT {min(int(match.group(1)), 20)}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\"\"\"\n q = cypher.strip()\n # Length first, so nothing below scans an unbounded string.\n if len(q) > _MAX_QUERY_CHARS:\n return (\n f\"Query is {len(q)} characters, over the {_MAX_QUERY_CHARS} this tool \"\n \"accepts. Ask for what you need in a smaller query.\"\n )\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n\n # Cap the result set so one query cannot dump the whole graph into the\n # model's context.\n if _LIMIT_AT_END_RE.search(q):\n q = _LIMIT_AT_END_RE.sub(_cap_limit, q)\n elif re.search(r\"\\bLIMIT\\b\", q, re.IGNORECASE):\n # A LIMIT that is not at the end belongs to a subclause; appending a\n # second one would not parse.\n pass\n else:\n q = q.rstrip().rstrip(\";\") + \" LIMIT 20\"\n\n rows = client.cypher(q)\n return str(rows) if rows else \"No results\"\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n rows = client.cypher(\n f\"MATCH (n:Entity {{name: $name}})-[*1..{safe_depth}]->(m:Entity) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity)-[r]->(b:Entity) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\"\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(\"Tools:\", [t.name for t in tools])" + "source": "import os, re\nfrom langchain_core.tools import tool\n\n# Relationship types are interpolated into Cypher rather than passed as a\n# parameter, because a type is part of the pattern and not a value. So the\n# name has to be validated before it goes in.\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n\n# query_facts runs Cypher the model writes. The database is private to this\n# run and is discarded when it closes, so a query cannot reach data that\n# belongs to anyone else; what remains is to keep this tool read-only and to\n# cap how much comes back.\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n\n# The model writes these queries, so their length is not ours to assume. A cap\n# keeps any scan over the text bounded regardless of what arrives; the longest\n# query this demo sends is 67 characters.\n_MAX_QUERY_CHARS = 2000\n\n# How many rows one query may put in front of the model.\n_MAX_ROWS = 20\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s}}) \"\n f\"MERGE (b:Entity {{name: $o}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\"\"\"\n q = cypher.strip()\n # Length first, so nothing below scans an unbounded string.\n if len(q) > _MAX_QUERY_CHARS:\n return (\n f\"Query is {len(q)} characters, over the {_MAX_QUERY_CHARS} this tool \"\n \"accepts. Ask for what you need in a smaller query.\"\n )\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n\n # The cap is on what comes back, not on the query text. Rewriting a LIMIT\n # into the query means recognising one first, and `LIMIT` inside a string\n # literal reads exactly like the keyword: `RETURN n, 'LIMIT' AS note` used\n # to match, skip both the rewrite and the append, and hand back every row.\n # Counting rows cannot be fooled by quoting and needs no Cypher parsing at\n # all. The database holds this run's own handful of facts, so asking the\n # engine for the whole match and trimming here costs nothing.\n rows = client.cypher(q)\n if not rows:\n return \"No results\"\n if len(rows) > _MAX_ROWS:\n return f\"{rows[:_MAX_ROWS]}\\n({len(rows)} rows matched, showing the first {_MAX_ROWS})\"\n return str(rows)\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n rows = client.cypher(\n f\"MATCH (n:Entity {{name: $name}})-[*1..{safe_depth}]->(m:Entity) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity)-[r]->(b:Entity) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\"\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(\"Tools:\", [t.name for t in tools])" }, { "cell_type": "markdown", From 8618bdf8e7841c09a8860069b4ee96ed02002032 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 17:37:12 +0300 Subject: [PATCH 55/56] fix(demo): give the agent back a memory that survives a restart Isolating the notebook by database did not require throwing away persistence, and switching it to `:memory:` did exactly that: the graph an agent had built vanished with the kernel, which is a poor showing for something the notebook calls graph memory. The isolation came from owning the database, not from discarding it. It writes to a file again, at a stable path so a restart finds the same graph, and its own rather than the one notebooks 00 to 02 pass a seeded graph through. COORDINODE_AGENT_DB moves it; deleting it starts the agent with nothing. Checked across runs rather than assumed: a fresh process on that file sees all seven facts, and a second full run of the notebook leaves seven edges and eight nodes with no duplicates, because every write is a MERGE. The one output line that differs between the two runs is the demo listing seven facts instead of six, since the second run starts with the memory the first one left. --- demo/README.md | 12 ++++++------ demo/notebooks/03_langgraph_agent.ipynb | 10 +++++----- 2 files changed, 11 insertions(+), 11 deletions(-) diff --git a/demo/README.md b/demo/README.md index db6692d..18ac2ea 100644 --- a/demo/README.md +++ b/demo/README.md @@ -13,12 +13,12 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/04_whats_new_in_0_5.ipynb) **What 0.5 Added** | Batch insert, `element_id`, schema revision, write/read concerns, time travel | a server (`COORDINODE_ADDR`) | > **Note:** **LangGraph** runs the engine in-process rather than against a -> server, in a database that exists only for that run. `query_facts` there -> executes Cypher the model writes, and a private database is what makes an -> invented query harmless; the alternative was filtering model-written Cypher -> by a session tag, which leaks the first time the filter misses a case. -> It installs `coordinode-embedded` from PyPI, which is also why it opens in -> Colab with nothing to set up. +> server, in a database file of its own that the graph outlives a kernel +> restart in. `query_facts` there executes Cypher the model writes, and a +> database nobody else writes to is what makes an invented query harmless; the +> alternative was filtering model-written Cypher by a session tag, which leaks +> the first time the filter misses a case. `COORDINODE_AGENT_DB` moves that +> file; deleting it starts the agent with no memory. > The Docker Compose stack below pins the CoordiNode **server** image v0.5.5 by > digest. Do not move it below that: 0.5.1 crashes its Raft core when the oplog > rolls a segment that already exists, and a single-node stack never regains diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index a5b8068..6da7057 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -4,7 +4,7 @@ "cell_type": "markdown", "id": "0", "metadata": {}, - "source": "# LangGraph + CoordiNode: Agent with graph memory\n\n[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb)\n\nDemonstrates a LangGraph agent that uses CoordiNode as persistent **graph memory**:\n- `save_fact`: store a subject → relation → object triple in the graph\n- `query_facts`: run an arbitrary read-only Cypher query against the graph\n- `find_related`: traverse the graph from a given entity\n- `list_all_facts`: dump every fact in the graph\n\n**Works without OpenAI.** The mock demo section calls the tools directly. \nSet `OPENAI_API_KEY` to run the full `gpt-4o-mini` ReAct agent.\n\n**Runs in-process.** The engine is embedded here (`coordinode-embedded`), in a\ndatabase that exists only for this run. That is deliberate: `query_facts`\nexecutes Cypher the model writes, and a private database is what makes an\ninvented query harmless. No server is involved. For the client/server API, see\nnotebooks 00 to 02 and **What 0.5 Added**.\n\n> **Needs a current `coordinode-embedded`.** The wheel on PyPI predates the\n> variable-length path syntax `find_related` uses, so until a release publishes\n> a matching one, build it from this checkout with\n> `maturin build --manifest-path coordinode-embedded/Cargo.toml` and install the\n> wheel it prints. The notebook checks for that syntax when it opens the\n> database and says so rather than failing later inside a tool call.\n" + "source": "# LangGraph + CoordiNode: Agent with graph memory\n\n[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb)\n\nDemonstrates a LangGraph agent that uses CoordiNode as persistent **graph memory**:\n- `save_fact`: store a subject → relation → object triple in the graph\n- `query_facts`: run an arbitrary read-only Cypher query against the graph\n- `find_related`: traverse the graph from a given entity\n- `list_all_facts`: dump every fact in the graph\n\n**Works without OpenAI.** The mock demo section calls the tools directly. \nSet `OPENAI_API_KEY` to run the full `gpt-4o-mini` ReAct agent.\n\n**Runs in-process, and the memory persists.** The engine is embedded here\n(`coordinode-embedded`), writing to a file this notebook owns, so the graph\nsurvives a kernel restart and re-running cells. Nobody else writes there, which\nis what makes it safe for `query_facts` to run Cypher the model composes. Set\n`COORDINODE_AGENT_DB` to put that file somewhere else; delete it to start the\nagent with no memory. For the client/server API, see notebooks 00 to 02 and\n**What 0.5 Added**.\n\n> **Needs a current `coordinode-embedded`.** The wheel on PyPI predates the\n> variable-length path syntax `find_related` uses, so until a release publishes\n> a matching one, build it from this checkout with\n> `maturin build --manifest-path coordinode-embedded/Cargo.toml` and install the\n> wheel it prints. The notebook checks for that syntax when it opens the\n> database and says so rather than failing later inside a tool call.\n" }, { "cell_type": "markdown", @@ -26,7 +26,7 @@ "cell_type": "markdown", "id": "3", "metadata": {}, - "source": "## Open the graph\n\n`LocalClient` runs the engine inside this process and exposes the same\n`.cypher()` as `CoordinodeClient` does over gRPC, so the tools below would read\nidentically against a server. What differs is where the data lives, and here it\nlives in a database of this run's own.\n" + "source": "## Open the graph\n\n`LocalClient` runs the engine inside this process and exposes the same\n`.cypher()` as `CoordinodeClient` does over gRPC, so the tools below would read\nidentically against a server. What differs is where the data lives: in a file\nthis notebook owns, which is what lets the graph outlive a kernel restart and\nstill belong to nobody else.\n" }, { "cell_type": "code", @@ -34,7 +34,7 @@ "id": "4", "metadata": {}, "outputs": [], - "source": "import os\n\n# This notebook runs the engine in-process, in a database of its own that\n# lives only as long as the run. That is the isolation: an agent writes the\n# Cypher here, and a private database is the only way to be sure a query it\n# invents cannot reach anyone else's data. Filtering by a session tag was the\n# alternative, and a text check over model-written Cypher leaks the moment it\n# misses a case.\n#\n# COORDINODE_ADDR is deliberately ignored. A shared server would put this\n# demo's writes next to everyone else's, which is what the private database\n# exists to avoid. The server API is what notebooks 00 to 02 and 04 exercise.\ntry:\n from coordinode_embedded import LocalClient\nexcept ImportError as exc:\n raise RuntimeError(\n \"coordinode-embedded is not installed, and this notebook runs on it.\\n\"\n \" pip install coordinode-embedded\\n\"\n \"In Colab, rerun the install cell above. To build it from this \"\n \"checkout instead: maturin build --manifest-path coordinode-embedded/\"\n \"Cargo.toml, then install the wheel it prints.\"\n ) from exc\n\nclient = LocalClient(\":memory:\")\n\n# `find_related` traverses with a variable-length path, and an older engine\n# cannot parse one. Ask now rather than let the tool fail mid-conversation\n# with a parse error that reads like the agent's fault. The published wheel is\n# older than this syntax until a release catches up, so this is the check that\n# tells a Colab reader what to do about it.\ntry:\n client.cypher(\"MATCH (n)-[*1..2]->(m) RETURN n LIMIT 1\")\nexcept Exception as exc:\n client.close()\n raise RuntimeError(\n \"The installed coordinode-embedded cannot parse a variable-length \"\n \"path, which `find_related` uses, so it predates this notebook.\\n\"\n \"Build the current one from this checkout:\\n\"\n \" maturin build --manifest-path coordinode-embedded/Cargo.toml\\n\"\n \"then install the wheel it prints. The release that publishes a \"\n \"matching wheel to PyPI is still pending.\"\n ) from exc\n\nprint(\"Using an in-process database, private to this run\")" + "source": "import os, tempfile\n\n# A database this notebook owns, on disk so the graph survives a kernel\n# restart and re-running cells: an agent's memory that vanished every time the\n# kernel bounced would not be much of a demo.\n#\n# It is a file of its own rather than the one notebooks 00 to 02 share. Those\n# pass a seeded graph between them; this one writes and reads only the facts\n# the agent creates here, so a separate file keeps the two apart.\n#\n# That file is also what makes `query_facts` safe to hand raw Cypher: nobody\n# else writes here, so a query the model invents has nothing of anyone else's\n# to reach. Against a shared server that took a guard proving each query\n# stayed inside this run's own tag, and a text check over model-written Cypher\n# leaks the moment it misses a case. COORDINODE_ADDR is ignored for that\n# reason; notebooks 00 to 02 and 04 exercise the client/server path.\nAGENT_DB_PATH = os.environ.get(\n \"COORDINODE_AGENT_DB\",\n \"/content/coordinode-agent-demo.db\"\n if os.path.isdir(\"/content\")\n else os.path.join(tempfile.gettempdir(), \"coordinode-agent-demo.db\"),\n)\n\ntry:\n from coordinode_embedded import LocalClient\nexcept ImportError as exc:\n raise RuntimeError(\n \"coordinode-embedded is not installed, and this notebook runs on it.\\n\"\n \" pip install coordinode-embedded\\n\"\n \"In Colab, rerun the install cell above. To build it from this \"\n \"checkout instead: maturin build --manifest-path coordinode-embedded/\"\n \"Cargo.toml, then install the wheel it prints.\"\n ) from exc\n\nclient = LocalClient(AGENT_DB_PATH)\n\n# `find_related` traverses with a variable-length path, and an older engine\n# cannot parse one. Ask now rather than let the tool fail mid-conversation\n# with a parse error that reads like the agent's fault. The published wheel is\n# older than this syntax until a release catches up, so this is the check that\n# tells a Colab reader what to do about it.\ntry:\n client.cypher(\"MATCH (n)-[*1..2]->(m) RETURN n LIMIT 1\")\nexcept Exception as exc:\n client.close()\n raise RuntimeError(\n \"The installed coordinode-embedded cannot parse a variable-length \"\n \"path, which `find_related` uses, so it predates this notebook.\\n\"\n \"Build the current one from this checkout:\\n\"\n \" maturin build --manifest-path coordinode-embedded/Cargo.toml\\n\"\n \"then install the wheel it prints. The release that publishes a \"\n \"matching wheel to PyPI is still pending.\"\n ) from exc\n\nprint(f\"Graph memory at {AGENT_DB_PATH}\")" }, { "cell_type": "markdown", @@ -48,7 +48,7 @@ "id": "6", "metadata": {}, "outputs": [], - "source": "import os, re\nfrom langchain_core.tools import tool\n\n# Relationship types are interpolated into Cypher rather than passed as a\n# parameter, because a type is part of the pattern and not a value. So the\n# name has to be validated before it goes in.\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n\n# query_facts runs Cypher the model writes. The database is private to this\n# run and is discarded when it closes, so a query cannot reach data that\n# belongs to anyone else; what remains is to keep this tool read-only and to\n# cap how much comes back.\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n\n# The model writes these queries, so their length is not ours to assume. A cap\n# keeps any scan over the text bounded regardless of what arrives; the longest\n# query this demo sends is 67 characters.\n_MAX_QUERY_CHARS = 2000\n\n# How many rows one query may put in front of the model.\n_MAX_ROWS = 20\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n client.cypher(\n f\"MERGE (a:Entity {{name: $s}}) \"\n f\"MERGE (b:Entity {{name: $o}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\"\"\"\n q = cypher.strip()\n # Length first, so nothing below scans an unbounded string.\n if len(q) > _MAX_QUERY_CHARS:\n return (\n f\"Query is {len(q)} characters, over the {_MAX_QUERY_CHARS} this tool \"\n \"accepts. Ask for what you need in a smaller query.\"\n )\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n\n # The cap is on what comes back, not on the query text. Rewriting a LIMIT\n # into the query means recognising one first, and `LIMIT` inside a string\n # literal reads exactly like the keyword: `RETURN n, 'LIMIT' AS note` used\n # to match, skip both the rewrite and the append, and hand back every row.\n # Counting rows cannot be fooled by quoting and needs no Cypher parsing at\n # all. The database holds this run's own handful of facts, so asking the\n # engine for the whole match and trimming here costs nothing.\n rows = client.cypher(q)\n if not rows:\n return \"No results\"\n if len(rows) > _MAX_ROWS:\n return f\"{rows[:_MAX_ROWS]}\\n({len(rows)} rows matched, showing the first {_MAX_ROWS})\"\n return str(rows)\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n rows = client.cypher(\n f\"MATCH (n:Entity {{name: $name}})-[*1..{safe_depth}]->(m:Entity) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity)-[r]->(b:Entity) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\"\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(\"Tools:\", [t.name for t in tools])" + "source": "import os, re\nfrom langchain_core.tools import tool\n\n# Relationship types are interpolated into Cypher rather than passed as a\n# parameter, because a type is part of the pattern and not a value. So the\n# name has to be validated before it goes in.\n_REL_TYPE_RE = re.compile(r\"[A-Z_][A-Z0-9_]*\")\n\n# query_facts runs Cypher the model writes. The database is this notebook's\n# own and nobody else writes to it, so a query cannot reach data that belongs\n# to anyone else; what remains is to keep this tool read-only and to cap how\n# much comes back.\n_WRITE_CLAUSE_RE = re.compile(\n r\"\\b(CREATE|MERGE|DELETE|DETACH|SET|REMOVE|DROP|CALL|LOAD)\\b\",\n re.IGNORECASE | re.DOTALL,\n)\n\n# The model writes these queries, so their length is not ours to assume. A cap\n# keeps any scan over the text bounded regardless of what arrives; the longest\n# query this demo sends is 67 characters.\n_MAX_QUERY_CHARS = 2000\n\n# How many rows one query may put in front of the model.\n_MAX_ROWS = 20\n\n\n@tool\ndef save_fact(subject: str, relation: str, obj: str) -> str:\n \"\"\"Save a fact (subject → relation → object) into the knowledge graph.\n Example: save_fact('Alice', 'WORKS_AT', 'Acme Corp')\"\"\"\n rel_type = relation.upper().replace(\" \", \"_\")\n if not _REL_TYPE_RE.fullmatch(rel_type):\n return f\"Invalid relation type {relation!r}: only letters, digits, and underscores allowed\"\n # MERGE rather than CREATE on all three, so re-running the notebook against\n # a graph it already wrote adds nothing a second time.\n client.cypher(\n f\"MERGE (a:Entity {{name: $s}}) \"\n f\"MERGE (b:Entity {{name: $o}}) \"\n f\"MERGE (a)-[r:{rel_type}]->(b)\",\n params={\"s\": subject, \"o\": obj},\n )\n return f\"Saved: {subject} -[{rel_type}]-> {obj}\"\n\n\n@tool\ndef query_facts(cypher: str) -> str:\n \"\"\"Run a read-only Cypher MATCH query against the knowledge graph.\"\"\"\n q = cypher.strip()\n # Length first, so nothing below scans an unbounded string.\n if len(q) > _MAX_QUERY_CHARS:\n return (\n f\"Query is {len(q)} characters, over the {_MAX_QUERY_CHARS} this tool \"\n \"accepts. Ask for what you need in a smaller query.\"\n )\n if _WRITE_CLAUSE_RE.search(q):\n return \"Only read-only Cypher is allowed in query_facts.\"\n\n # The cap is on what comes back, not on the query text. Rewriting a LIMIT\n # into the query means recognising one first, and `LIMIT` inside a string\n # literal reads exactly like the keyword: `RETURN n, 'LIMIT' AS note` used\n # to match, skip both the rewrite and the append, and hand back every row.\n # Counting rows cannot be fooled by quoting and needs no Cypher parsing at\n # all.\n rows = client.cypher(q)\n if not rows:\n return \"No results\"\n if len(rows) > _MAX_ROWS:\n return f\"{rows[:_MAX_ROWS]}\\n({len(rows)} rows matched, showing the first {_MAX_ROWS})\"\n return str(rows)\n\n\n@tool\ndef find_related(entity_name: str, depth: int = 1) -> str:\n \"\"\"Find all entities reachable from entity_name within the given number of hops (max 3).\"\"\"\n safe_depth = max(1, min(int(depth), 3))\n rows = client.cypher(\n f\"MATCH (n:Entity {{name: $name}})-[*1..{safe_depth}]->(m:Entity) \"\n \"RETURN DISTINCT m.name AS related LIMIT 20\",\n params={\"name\": entity_name},\n )\n if not rows:\n return f\"No related entities found for {entity_name}\"\n return \"\\n\".join(r[\"related\"] for r in rows)\n\n\n@tool\ndef list_all_facts() -> str:\n \"\"\"List every fact stored in the knowledge graph.\"\"\"\n rows = client.cypher(\n \"MATCH (a:Entity)-[r]->(b:Entity) \"\n \"RETURN a.name AS subject, type(r) AS relation, b.name AS object\"\n )\n if not rows:\n return \"No facts stored yet\"\n return \"\\n\".join(f\"{r['subject']} -[{r['relation']}]-> {r['object']}\" for r in rows)\n\n\ntools = [save_fact, query_facts, find_related, list_all_facts]\nprint(\"Tools:\", [t.name for t in tools])" }, { "cell_type": "markdown", @@ -184,7 +184,7 @@ "id": "14", "metadata": {}, "outputs": [], - "source": "# The database lives in memory and is discarded here, so there is nothing to\n# delete first: closing the client is the cleanup.\nclient.close()\nprint(\"Closed. The in-process database went with it.\")" + "source": "# The graph stays on disk so the next run, or the next kernel, still has it.\n# Closing only releases the handle.\nclient.close()\nprint(f\"Closed. The graph is still at {AGENT_DB_PATH}.\")\nprint(\"Delete that path to start the agent with no memory.\")" } ], "metadata": { From a25bcbce216d8c40dc7c56f026a3cde9f4878805 Mon Sep 17 00:00:00 2001 From: Dmitry Prudnikov Date: Mon, 31 Aug 2026 17:45:55 +0300 Subject: [PATCH 56/56] docs(demo): correct what the published wheel actually cannot do The notebook and the demo README claimed the wheel on PyPI predates the path syntax `find_related` uses, so the Compose stack could not run that notebook until a release published a newer one. Running all five notebooks in the stack disproved it: the agent notebook ran there on that very wheel, and its traversal returned the same entities at depth 1 and depth 2 as a locally built engine does. The measurement behind the claim tested `MATCH p = (...)`, which binds a path variable. That form did belong to `find_related`, in the version that carried a session filter over every node on the path, and it went out with that filter. What remains is `MATCH (n)-[*1..3]->(m)`, which the old engine parses. So the row for that notebook says it needs nothing again, the note says how it works in the stack rather than why it cannot, and the startup probe asks about the variable-length relationship it actually uses instead of blaming the published wheel. The release fix stands on its own: a package whose version never moves cannot ship a correction, whatever the current one happens to handle. --- demo/README.md | 10 ++++------ demo/notebooks/03_langgraph_agent.ipynb | 4 ++-- 2 files changed, 6 insertions(+), 8 deletions(-) diff --git a/demo/README.md b/demo/README.md index 18ac2ea..2d5fd2d 100644 --- a/demo/README.md +++ b/demo/README.md @@ -9,7 +9,7 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/00_seed_data.ipynb) **Seed Data** | Build a tech-industry knowledge graph (~35 relationships) | nothing | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/01_llama_index_property_graph.ipynb) **LlamaIndex** | `CoordinodePropertyGraphStore`: upsert, triplets, structured query | nothing | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/02_langchain_graph_chain.ipynb) **LangChain** | `CoordinodeGraph`: add_graph_documents, schema, GraphCypherQAChain | nothing | -| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb) **LangGraph** | Agent with CoordiNode as graph memory (save/query/traverse) | a current `coordinode-embedded` | +| [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb) **LangGraph** | Agent with CoordiNode as graph memory (save/query/traverse) | nothing | | [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/04_whats_new_in_0_5.ipynb) **What 0.5 Added** | Batch insert, `element_id`, schema revision, write/read concerns, time travel | a server (`COORDINODE_ADDR`) | > **Note:** **LangGraph** runs the engine in-process rather than against a @@ -30,11 +30,9 @@ Interactive notebooks for LlamaIndex, LangChain, and LangGraph integrations. > until `COORDINODE_ADDR` points at a server. Run it against the Docker Compose > stack below. > -> In the Compose stack, **LangGraph** needs `coordinode-embedded` in the Jupyter -> image. The wheel currently on PyPI predates the path syntax `find_related` -> uses, so the image does not install it yet; run that notebook in Colab or -> locally until a release publishes a current wheel. The other four use the -> server and are unaffected. +> In the Compose stack, **LangGraph** installs `coordinode-embedded` from PyPI +> the first time its install cell runs, and keeps its graph in the container's +> own file. The other four talk to the server beside it. ## Run locally (Docker Compose) diff --git a/demo/notebooks/03_langgraph_agent.ipynb b/demo/notebooks/03_langgraph_agent.ipynb index 6da7057..e645b85 100644 --- a/demo/notebooks/03_langgraph_agent.ipynb +++ b/demo/notebooks/03_langgraph_agent.ipynb @@ -4,7 +4,7 @@ "cell_type": "markdown", "id": "0", "metadata": {}, - "source": "# LangGraph + CoordiNode: Agent with graph memory\n\n[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb)\n\nDemonstrates a LangGraph agent that uses CoordiNode as persistent **graph memory**:\n- `save_fact`: store a subject → relation → object triple in the graph\n- `query_facts`: run an arbitrary read-only Cypher query against the graph\n- `find_related`: traverse the graph from a given entity\n- `list_all_facts`: dump every fact in the graph\n\n**Works without OpenAI.** The mock demo section calls the tools directly. \nSet `OPENAI_API_KEY` to run the full `gpt-4o-mini` ReAct agent.\n\n**Runs in-process, and the memory persists.** The engine is embedded here\n(`coordinode-embedded`), writing to a file this notebook owns, so the graph\nsurvives a kernel restart and re-running cells. Nobody else writes there, which\nis what makes it safe for `query_facts` to run Cypher the model composes. Set\n`COORDINODE_AGENT_DB` to put that file somewhere else; delete it to start the\nagent with no memory. For the client/server API, see notebooks 00 to 02 and\n**What 0.5 Added**.\n\n> **Needs a current `coordinode-embedded`.** The wheel on PyPI predates the\n> variable-length path syntax `find_related` uses, so until a release publishes\n> a matching one, build it from this checkout with\n> `maturin build --manifest-path coordinode-embedded/Cargo.toml` and install the\n> wheel it prints. The notebook checks for that syntax when it opens the\n> database and says so rather than failing later inside a tool call.\n" + "source": "# LangGraph + CoordiNode: Agent with graph memory\n\n[![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/structured-world/coordinode-python/blob/main/demo/notebooks/03_langgraph_agent.ipynb)\n\nDemonstrates a LangGraph agent that uses CoordiNode as persistent **graph memory**:\n- `save_fact`: store a subject → relation → object triple in the graph\n- `query_facts`: run an arbitrary read-only Cypher query against the graph\n- `find_related`: traverse the graph from a given entity\n- `list_all_facts`: dump every fact in the graph\n\n**Works without OpenAI.** The mock demo section calls the tools directly. \nSet `OPENAI_API_KEY` to run the full `gpt-4o-mini` ReAct agent.\n\n**Runs in-process, and the memory persists.** The engine is embedded here\n(`coordinode-embedded`), writing to a file this notebook owns, so the graph\nsurvives a kernel restart and re-running cells. Nobody else writes there, which\nis what makes it safe for `query_facts` to run Cypher the model composes. Set\n`COORDINODE_AGENT_DB` to put that file somewhere else; delete it to start the\nagent with no memory. No server is involved, so this one opens in Colab with\nnothing to set up. For the client/server API, see notebooks 00 to 02 and\n**What 0.5 Added**.\n" }, { "cell_type": "markdown", @@ -34,7 +34,7 @@ "id": "4", "metadata": {}, "outputs": [], - "source": "import os, tempfile\n\n# A database this notebook owns, on disk so the graph survives a kernel\n# restart and re-running cells: an agent's memory that vanished every time the\n# kernel bounced would not be much of a demo.\n#\n# It is a file of its own rather than the one notebooks 00 to 02 share. Those\n# pass a seeded graph between them; this one writes and reads only the facts\n# the agent creates here, so a separate file keeps the two apart.\n#\n# That file is also what makes `query_facts` safe to hand raw Cypher: nobody\n# else writes here, so a query the model invents has nothing of anyone else's\n# to reach. Against a shared server that took a guard proving each query\n# stayed inside this run's own tag, and a text check over model-written Cypher\n# leaks the moment it misses a case. COORDINODE_ADDR is ignored for that\n# reason; notebooks 00 to 02 and 04 exercise the client/server path.\nAGENT_DB_PATH = os.environ.get(\n \"COORDINODE_AGENT_DB\",\n \"/content/coordinode-agent-demo.db\"\n if os.path.isdir(\"/content\")\n else os.path.join(tempfile.gettempdir(), \"coordinode-agent-demo.db\"),\n)\n\ntry:\n from coordinode_embedded import LocalClient\nexcept ImportError as exc:\n raise RuntimeError(\n \"coordinode-embedded is not installed, and this notebook runs on it.\\n\"\n \" pip install coordinode-embedded\\n\"\n \"In Colab, rerun the install cell above. To build it from this \"\n \"checkout instead: maturin build --manifest-path coordinode-embedded/\"\n \"Cargo.toml, then install the wheel it prints.\"\n ) from exc\n\nclient = LocalClient(AGENT_DB_PATH)\n\n# `find_related` traverses with a variable-length path, and an older engine\n# cannot parse one. Ask now rather than let the tool fail mid-conversation\n# with a parse error that reads like the agent's fault. The published wheel is\n# older than this syntax until a release catches up, so this is the check that\n# tells a Colab reader what to do about it.\ntry:\n client.cypher(\"MATCH (n)-[*1..2]->(m) RETURN n LIMIT 1\")\nexcept Exception as exc:\n client.close()\n raise RuntimeError(\n \"The installed coordinode-embedded cannot parse a variable-length \"\n \"path, which `find_related` uses, so it predates this notebook.\\n\"\n \"Build the current one from this checkout:\\n\"\n \" maturin build --manifest-path coordinode-embedded/Cargo.toml\\n\"\n \"then install the wheel it prints. The release that publishes a \"\n \"matching wheel to PyPI is still pending.\"\n ) from exc\n\nprint(f\"Graph memory at {AGENT_DB_PATH}\")" + "source": "import os, tempfile\n\n# A database this notebook owns, on disk so the graph survives a kernel\n# restart and re-running cells: an agent's memory that vanished every time the\n# kernel bounced would not be much of a demo.\n#\n# It is a file of its own rather than the one notebooks 00 to 02 share. Those\n# pass a seeded graph between them; this one writes and reads only the facts\n# the agent creates here, so a separate file keeps the two apart.\n#\n# That file is also what makes `query_facts` safe to hand raw Cypher: nobody\n# else writes here, so a query the model invents has nothing of anyone else's\n# to reach. Against a shared server that took a guard proving each query\n# stayed inside this run's own tag, and a text check over model-written Cypher\n# leaks the moment it misses a case. COORDINODE_ADDR is ignored for that\n# reason; notebooks 00 to 02 and 04 exercise the client/server path.\nAGENT_DB_PATH = os.environ.get(\n \"COORDINODE_AGENT_DB\",\n \"/content/coordinode-agent-demo.db\"\n if os.path.isdir(\"/content\")\n else os.path.join(tempfile.gettempdir(), \"coordinode-agent-demo.db\"),\n)\n\ntry:\n from coordinode_embedded import LocalClient\nexcept ImportError as exc:\n raise RuntimeError(\n \"coordinode-embedded is not installed, and this notebook runs on it.\\n\"\n \" pip install coordinode-embedded\\n\"\n \"In Colab, rerun the install cell above. To build it from this \"\n \"checkout instead: maturin build --manifest-path coordinode-embedded/\"\n \"Cargo.toml, then install the wheel it prints.\"\n ) from exc\n\nclient = LocalClient(AGENT_DB_PATH)\n\n# `find_related` traverses with a variable-length relationship. Ask the engine\n# for one now, so an installation too old to parse it says so here instead of\n# failing mid-conversation with a parse error that reads like the agent's\n# fault.\ntry:\n client.cypher(\"MATCH (n)-[*1..2]->(m) RETURN n LIMIT 1\")\nexcept Exception as exc:\n client.close()\n raise RuntimeError(\n \"The installed coordinode-embedded cannot parse a variable-length \"\n \"relationship, which `find_related` uses.\\n\"\n \"Upgrade it, or build the current one from this checkout:\\n\"\n \" maturin build --manifest-path coordinode-embedded/Cargo.toml\\n\"\n \"then install the wheel it prints.\"\n ) from exc\n\nprint(f\"Graph memory at {AGENT_DB_PATH}\")" }, { "cell_type": "markdown",