Issues

• robot convert from OWL to OBO drops AnnotationProperties and NamedIndividuals...

  1.4 major issues
  owlcollab/oboformat#154 · Filter by author edwardsnj opened on Mar 4, 2026
  5

• Allow multiple synonym types per synonym

  1.6 spec proposals
  owlcollab/oboformat#153 · Filter by author matentzn opened on Mar 11, 2025

• Roundtrip to annotation properties does not work

  owlcollab/oboformat#152 · Filter by author cmungall opened on Nov 13, 2024

• values in trailing modifiers can't have datatypes

  1.4 major issues
  owlcollab/oboformat#151 · Filter by author balhoff opened on Jun 4, 2024

• Use SPARQL production rules for prefixed and unprefixed identifiers

  1.6 spec proposals
  owlcollab/oboformat#150 · Filter by author althonos opened on Feb 29, 2024
  3

• Escaping for URL-as-ID is inconsistent with IRIs

  1.4 major issues
  owlcollab/oboformat#149 · Filter by author althonos opened on Feb 29, 2024
  1

• Qualifier syntax is ambiguous for IRI identifiers and inconsistent

  1.4 major issues
  owlcollab/oboformat#148 · Filter by author althonos opened on Feb 28, 2024

• oboformat loader should generated subAnnotationPropertyOf when is_a is used between Typedefs with is_metadata_tag

  owlcollab/oboformat#147 · Filter by author cmungall opened on Nov 22, 2023

• Create a comprehensive oboformat compliance test suite

  owlcollab/oboformat#146 · Filter by author cmungall opened on Nov 22, 2023

• owl-axioms should not need to be wrapped in Ontology(...)

  1.6 spec proposals
  owlcollab/oboformat#145 · Filter by author cmungall opened on Nov 22, 2023

• Annotation assertions should not show up as relationship tags

  1.6 spec proposals
  owlcollab/oboformat#144 · Filter by author cmungall opened on Aug 29, 2023

• Breaking issue regarding annotation property 'see also' in Uberon

  1.4 major issues
  owlcollab/oboformat#143 · Filter by author ghost opened on Aug 17, 2023
  10

• is_inferred should output xsd:boolean, not xsd:string annotation

  owlcollab/oboformat#142 · Filter by author matentzn opened on Aug 5, 2023

• 1.6: don't inject oboInOwl:id annotations

  1.6 spec proposals
  owlcollab/oboformat#141 · Filter by author balhoff opened on Aug 3, 2023

• Faulty interaction between IAO:0000231 and replaced_by

  1.4 major issuesPriority-Critical
  owlcollab/oboformat#140 · Filter by author matentzn opened on Aug 2, 2023
  3

• 1.6: make tag ordering part of normative specification, not informative

  owlcollab/oboformat#138 · Filter by author cmungall opened on Mar 20, 2023
  3

• 1.6: consider making annotations always property values, and 'relation' tags only for semantic relations (existential or universal restriction)

  1.6 spec proposals
  owlcollab/oboformat#137 · Filter by author balhoff opened on Jan 19, 2023

• 1.6: Allow domain, range, is-a for annotation properties (alternative to #135)

  1.6 spec proposals
  owlcollab/oboformat#136 · Filter by author cmungall opened on Dec 22, 2022

• 1.6: New Typedef field: value_type

  1.6 spec proposals
  owlcollab/oboformat#135 · Filter by author cmungall opened on Dec 22, 2022

• 1.6: Automatically create additional generic property values for multiple names, definitions, etc.

  1.6 spec proposals
  owlcollab/oboformat#134 · Filter by author cmungall opened on Dec 22, 2022
  1

• 1.6: Adopt Turtle grammar for IRIs, CURIEs, literals

  1.6 spec proposals
  owlcollab/oboformat#133 · Filter by author cmungall opened on Dec 22, 2022
  1

• 1.6: Clarify use of idspace as a mechanism for controlling CURIE expansion and persist these as shacl triples

  1.6 spec proposals
  owlcollab/oboformat#132 · Filter by author cmungall opened on Dec 22, 2022

• Multiple equivalent class axioms for a single term are merged in OBO output

  1.4 major issues
  owlcollab/oboformat#131 · Filter by author cmungall opened on Dec 22, 2022

• Use of Annotation Properties for subsets and synonymtypes is non-intuitive

  1.4 major issues
  owlcollab/oboformat#130 · Filter by author cmungall opened on Dec 22, 2022

• Subsets and synonym types have hash-based URIs by default

  1.4 major issues
  owlcollab/oboformat#129 · Filter by author cmungall opened on Dec 22, 2022