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NAMESPACE
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executable file
·95 lines (94 loc) · 2.73 KB
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# Generated by roxygen2: do not edit by hand
export(createExampleData)
export(daHeatmapLogFC)
export(daLogRatioPlot)
export(daMAplot)
export(daScatterPlot)
export(daSignificantGenesBarplot)
export(daUpset)
export(daVolcanoPlot)
export(daWaterfallPlot)
export(getSEModel)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,results)
importFrom(UpSetR,intersects)
importFrom(UpSetR,upset)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,filterByExpr)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmQLFit)
importFrom(edgeR,topTags)
importFrom(ggh4x,facet_nested_wrap)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_stack)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_alpha)
importFrom(ggplot2,scale_alpha_manual)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_size_manual)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,n2mfrow)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(legendry,guide_axis_nested)
importFrom(limma,contrasts.fit)
importFrom(limma,decideTests)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(plyr,ddply)
importFrom(plyr,dlply)
importFrom(plyr,rbind.fill)
importFrom(rlang,.data)
importFrom(rlang,expr)
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(stats,as.dendrogram)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,order.dendrogram)
importFrom(stats,reorder)
importFrom(stats,setNames)
importFrom(utils,combn)
importFrom(utils,download.file)
importFrom(utils,getFromNamespace)
importFrom(utils,read.table)